>input_sequence_68487
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-----------------------------------------------------ATGGTGATGGCGGAGCCGGAGGAGACC
CCGAGACCCCAGAGGCCGTCGGCGGGCGGTGGCGCCGTCGCCGTCGAGCCGTCCCCGCCCGCGGCGGCGGCGCCTCGGTG
GCTGACGGTGTGGTGCAAGTCGCTGGTGTTCCGCGGCGACGGGTACGCGGTGTTCGACGACGCGGACGGCCGGATGGTGT
TCCGCGTGGACAACTACGGCGTCGGCCCGGGAAGCATGGCGCTCATGGACCACGCCGGCCGCGTCCTCCTCACCGTCCGC
CGCCGCCAACGCAAGGTGATCACTGATCG------ATCGGGTAGATCTATTCTACTCATCTACTTGTTTTTTGGCTACTG
GTAATATACATTACACGCGCTGATTAGTTAGCTTCGTGCATGACATGAACCCGTTCGACAATTGGCCGCATGCAGATTCT
GAGCTTGATGCCGGAGACATGGGAGGTGTACAATGGCGACGTCGACGACGACTCGAACTCGAACGACGGCCACAGTGAGC
CGCACCTCATGATGAGAGCCATCAAGGACCTGGGGAGGTCCAGCTGCACCGCCTCCGTGCTTGCCGTGGACGAGCCAGAA
CTCTACCGCCTGAGCTGGTCCCGGCAGGAGGAGTGGTCGAGGATCCACCGTCGCAGCTCCACCAGCGACGAGACGCTCAT
CGCCGAGGTGCGGCGGAAACGAGGGGGGCCAGAGAAGGCGACATTGCTGGGCAAGGACGTGCTGTCGCTGGTGGTGCAGC
CGGGGATGGACCTTGCCATCACCATGGCCATGCTCATGATCTCCAACTCGTACCGATGA---------------------
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>chr1A_1_TraesCS1A01G095300
TGGTTGTTCGGTCCATATATAATTTAATTCATTTAACTAAAATTCAGCACCAGTCGCTATCAGAAATTTAGAATAGCTAA
TAGTTTTCGGAAAAT---TCAGAATAATTAGTTGTA--GTTGACTGATTGATTGCTTTAACAAACTTAAGCTTTCCTGAA
TTAGCTGTATCAAGCAGACCGTTTCCCAAGTGAATTATTATTCCGATCCTGGGATATCTTCACGTAATATCGTAGCCATA
AACTATTTGTACACGTGAATCACAACCCAAATGTCAACTCTAGGGGGAATATTACATATTTACACCAAAAATTGGCAAAG
AAATACACTCACAGGACCACCGCCCTGCGCAAGGATACATTTGCAGAGTTCAACAATCAAGTTTGTTTACATATCCATGG
CCAATCTAACGGTATCATTTGTATCTGGCCATTTCAAACAA---ATTTTTT-GTCAATTGTCAAAGGTAGAGAAATCTGA
TGGCCCAACCTTTTTCTTTTCTGAGTAGATATTGAGTTATTTTATTTGGTTGAAATTTTCCATGTTGATCTGATGTTCCA
ACAGAATTGGAGTTGCGCAATCACACGAGTTGCATCTGATATA---------------------------------TTGA
AGGAGTATTTGAAAGATAAGATAGCACAAAATATATCTCACAAACTTTAGAAAAAGTTCTACTATATGTTAC--------
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------------------------------------------TAGCTAGCTAGCTGGTCCAGCTAGGTCAACTCTGGCAT
CCCCACAAATTAACTCCGACGCGCAAAAATAAATAAGTTATTATCTCATGCATGGTCCCAAAGAATCAGCAGTATCCATT
AATAATTTACCAAATAGAAATGCAAAAAA-TGCAATCGGTGATCTCAAAAATAATTCTATGCATAAAAAAATCTTATAAT
AAAAATTGAGCAATCCAGGGTCAAAACAGTGTCGCATCCATGCAGACGCAACGGAGTCCAGATATTGGCTTATAAAGAAG
AGCAGCACGCGCAGGCGCGCACGTCGTCGGAGCTAGCTTGGCAACGACCGACCATGGTGATGGCGGAGCCGGAGGAGACC
CCGAGACCCCAGAGGCCGTCGGCGGGCGGTGGCGCCGTCGCCGTCGAGCCGTCCCCGCCCGCGGCGGCGGCGCCTCGGTG
GCTGACGGTGTGGTGCAAGTCGCTGGTGTTCCGCGGCGACGGGTACGCGGTGTTCGACGACGCGGACGGCCGGATGGTGT
TCCGCGTGGACAACTACGGCGTCGGCCCGGGAAGCATGGCGCTCATGGACCACGCCGGCCGCGTCCTCCTCACCGTCCGC
CGCCGCCAACGCAAGGTGATCACTGATCG------ATCGGGTAGATCTATTCTACTCATCTACTTGTTTTTTGGCTACTG
GTAATATACATTACACGCGCTGATTAGTTAGCTTCGTGCATGACATGAACCCGTTCGACAATTGGCCGCATGCAGATTCT
GAGCTTGATGCCGGAGACATGGGAGGTGTACAATGGCGACGTCGACGACGACTCGAACTCGAACGACGGCCACAGTGAGC
CGCACCTCATGATGAGAGCCATCAAGGACCTGGGGAGGTCCAGCTGCACCGCCTCCGTGCTTGCCGTGGACGAGCCAGAA
CTCTACCGCCTGAGCTGGTCCCGGCAGGAGGAGTGGTCGAGGATCCACCGTCGCAGCTCCACCAGCGACGAGACGCTCAT
CGCCGAGGTGCGGCGGAAACGAGGGGGGCCAGAGAAGGCGACATTGCTGGGCAAGGACGTGCTGTCGCTGGTGGTGCAGC
CGGGGATGGACCTTGCCATCACCATGGCCATGCTCATGATCTCCAACTCGTACCGATGACCCC-GCCCCGCCCGAATCGC
CAGGCCAACAAATGTTCATGCATATAGAAGCTTCTAGAACATTTCGGAGGTTGTAGAAGAAGAAGCACGTCGGTATACCT
ATTGTAAATCCCCATATTCTTTGGCATTTCATTTCATTGTTGCATTCATCCTTCCAGAACAGTTGCAATGTAAACCTTGC
AGTGTTGCTGAAATACTGAACGGGTCTGCTAGTCTGCTACCATTTCATCTAAGGCCACACACCATGTTCCCAATAGAGAT
ACCAATAACATGGGGAAGGTAGGCAAGCAACGCAAAGACGTGCACAGCACAACACTAGCCAAACAAACATCACCAAGTGT
TTACTTCCCAGGGCAAAACAACTCACATGCTACAGCTAATTTACAGATCCTACAGATTCTTCCTCCCCTTCTTGTGTGAC
GGGTTTGCGCCATTGTCAGTATGTAGCAGCATTGTCATGCAAATCACGGCGAGAACAGCCACTGTAGCTATAGGCTTACA
GCTGGGTACTCGCTGTGCCTGGCCGCAGCCTGCCTGAATTCATCACACCCCTCGCAGTTGTCTAACATAGGGAGAAAATT
GTATCAAGTACAAGGGCAAT-----GTCTATGGATAGTTAACCGATCCCGAATTGGAAGAGCTTACCTCAAAGAAAGAGT
TAAAGTTCAGTCTCATCAGAAACTGCCTCAGGAAAGGTGCTCTCTGACTTCCCGCAAGTCGACTACTCCTTAGGATAGTG
TACAGCGAATTTGATTTCTTGTTGAACTCCTGAATATCACCAATT-----GTATGTAAGTTTATGCTACATATACTAGGA
AACTGAGCAAAAAGCTGGCTAGCTTAGACATCCATGAGTGATGTGCCAAGCACTGGCATGTCCCTATTTGTTCACAGAAG
GCCCATGGTGTTAGGTGGGACAATACCTCAGTTATGTGATCAATCTCAAACATGTTTGCGCCTGTTTCGTATTGCTCGAT
ACTCCAGCAGAACTGCAAGCAGAGCTTCAT
>chr1B_12
-----------TCCATATATAGTTTAATTCATTTAACTAAAGTTCAGCACCAGTTGCTATCAGAAATTTAGAATAGCTAA
TGGTTTTTGGAAAAAAAATCAGAATAATTAGTTGTA--GTTCACTGATTGATTGCTTTAACTAACTTAAGCTTTCCTGAA
TTAGCTGTATCAAACAGACCGTTCCCCAACTGAATTATTATTCCGATCCTGGGATATCTTC---TAATATCGTAGCCATA
AACTATTTGTACACGTGAATCACAACCCAAATGTCAACTCTAGGGAGAATATTACATATTTACACCAAAAAATGGCAAAG
AAATACATCCACGGGACCACCGCCCTGCGCAAGGATACATTTGCAGACTTCAACAATCAAGTTTGTTTACATATCCATGG
CCAATCTAACAGTATCATTTGTATCTGGCCATTTGAAACAATTAATTTTTTCGTCAATTGTCAAAGCTAGAGAAATCTGA
TGGCCCAACCTT-TTCTTTTCTGAGTAGATATTGAGCTATTTTATTTGGTTGAAATTTTCCATGTTGATCTGATGTTCCA
ACTGAATTGGAGTTGCGCAATCACACGAGTTGCATCTGATATATTGCAGGAGTTTT--TTTTTTTTGAGAGTTATATTGC
AGGAGTATTTGAAAGATAAGATAGCACAAAA---ATAT------------------------------------------
---------------------------------------------------------------------------TATTA
GTAGATTTATTTTAGGATTTCTGGCGACGCGCGTTCAGTGGGAAGAGACGCCTCGTCGACTACGAGGCGTTTTTGGTGAC
TTCGTCAATCTTAAGATGATATGTCGGCTCGGTCTCTCGGAGGTGCTCATAAGGATAAGGCATGCGTATGCATTCATAGG
GATGAGTGTATGCATGTATAGTGCCTAAAAAAAACTATGTGTTAGATAGCTAGCTGGTCTAGCTAGGTCAACTATGGGAT
CCCCATAAATTAACTCCGACGCGCAAAATT---------------------ATGGTCCCAAAGAATCAGCAGTATCCATT
AAT---TTACCAAAAAAATGCAAAAAAAA-TGCAATCAATGTTCTCAAAAATAATTTTATGCATAAATGGATCTGATAAT
AAAAATCGAGCAATCCAGAGTCAAAACAGTGTCGCATCCATGCAGACGCAACGGAGTCCAGATA--GGCTTATAAAGAAC
AGCAGCACGCGCAGGCGCGCACGTCGTCGGAGCTAGCTTGGCAACGACCGACCATGGTGATGGCGGAGCCGGAGGAGACC
CCGGGATCCCAAAGGCCGTCGGCGGACCGTGGCTCCGTCGCCGGGGAGCCGTCCCCGCCCGCAGCGGCGACGCCTCGGCG
GCTGACGGTGTGGTGCAAGTCGCTGGTGTTCCGCGGCGACGGGTACGCGGTGTTCGACGACGTGGACGGCCGGATGGTGT
TCCGCGTGGACAACTACGGCGTCGGGCCGGGAAGCATGGCGCTCATGGACCACGCCGGCCGCGTCCTCCTCACCCTCCGC
CGCCGCCAACGCAAGGTGATCGCTGGTCG------ACCGAGTAGATCTACTCTA----TCTACTTTTTTTTGGC------
-TATTATACATTACACGCTCTGATTAGTTTGCTTCGTGCATGACATGAACCCGTTCGACAATTGGCCGCATGCAGATGCT
GAGCTTGATGCCGGAGACATGGGAGGTGTACAATGGCGACGTCGACGACGACTCGGCCGCGAACGACGGCCACGGTGAGC
CGCACCTCATGATGAGAGCCACCAAGGACCTGGGCAGGTCCAGCTGCACCGCCTCCATGCTTGCCGTGGACAAGCCAGAA
CTCTACCGCCTGAGCTGGTCCCGGCGGGAGGAGTGGTCGAGGATCCACCGGCGCAGCTCGACCGGCAACGAGACACTCAT
CGCCGAGGTGCGACGGAAACGAGGGGGGCCAGAGAAGGCGACATTGCTGGGCAAGGACGTGCTGTCGCTGGTGGTGCAGC
CGGGGATGGACCTTGCCATCACCATGGCCATGCTCATGATCTCCAACTCGTACCGATGACCCTGGCCCCGTCCAAATCGC
CAGGGCAACAAATGTTCATGCATATAGAAGCATCTAGAACATTCCAGAGGTTGTAGAAGAA---GCACGTCGGTATACCC
ATTGTACATCCCCATATTCTTTGGGA-TTCATTTCAATGTTGCATTCATCCTTCCAGAACAGTTGCAATGTAAACCTTGC
AGTGTTGCTGAAGTACTGAACGGGTTC--------GCTACCATTTCATCTAAGGCCACACACCATGTTCCCAATAGAGAT
ACCAATAACATGGGAAAGGTAGGCAAGCAACGCAAAGACGTGCACATCACAACACTAGTCAAACAGACATCACCAAGTGT
TTACTTCCCAGGGCAAAACAACTCACATGCTACAGCTAATTTACAGATCCTACAGATTCTTCCTCCCCTTCTTGTGTGAC
AGGTTTGCGCCATTGTCAGTACGTAGCAGCATTGTCGTGCAAATCACGGCGAGAACAGCCGCTGTGGCGATAGGCTTACA
GCTGGGTACTCGCTGTGCCTGGCCGCAGCCTGCCTGAATTCATCACACCCCTCGCAGTTGTCTAGCATAGGGAGAAAAAT
GTATTAAGTACAAGGGCAATACAATGTCTATAGATAATTAACTAATCCCTAATTGGAAGAGCTTACCTCAAAGAAAGAGT
TGAAGTTTAGTCTCATCAGAAACTGCCTCAGGAAAGGTGCTCTCTGACTTCCAGCAAGTCGACTACTCCTTAGGATGGTG
TACAGCGAATTTGATTTCTTGTTGAACTCCTGAATATCGCCAAAT-----GTATGTAAGTTTATGCTACATATACTAGGA
AACTAAGCAAAAAGCTGGCTAGCTAAGACATCCATGAGTGATGTGCCAAGCGCTGGCACGTCACTATTTGTTCACAGAAG
GCCGATAGTGTTGGGTGGGACAATACCTCAGTTATGTGATCAATCTCAAACATGTTTGAGCCTGTTTCGTATTGCTCGAT
ACTCCAGCAGAACTGCAAGCAGAGCTTCAT
>chr1D_12
-----------TCCATATATAGTTTAATTCATTTAACTAAAGTTCAGCACCCGTCGCTATCAGAAATTTAGAATAGCTAA
TGGTTTTTGGGGAGAAAAACAGAATAATTAGTTGTATAGTTCAATGATTGATTGCTTTAACTAACTTAAGCTTTCCTGAA
TTAGCTGTATCAAACAGACCGTTCCCCAACTGAATTATTATTCCGATCCTGGGATATCTTC---TAATATTGTAGCCATA
GACTATTTGCACACGTGAATCACAACCCAAATGTCAACTCTAGGGAGAATATTACATATTTACACCAAAAATTGGCAAAG
AAATACATCCACGGGACCACCGCCCTGCGCAAGGATACATTTGCAGACTTCAACAATCAAGTTTGTTTACATATCCATGG
CCAATCTAACAGTATCATTTGTATCTGGCCATTTCAAACAATTAATTTTTT-GTCAATTGTCAAAGCTAGAGAAATCTGA
TGGCCCAACATT-TTCTTTTCTGAGTAGATATTGAGCTATTTTATTTGGTTGAAATTTTCCATGTTGATCTGATGTTCCA
ACTGAATTGGAGTCGCGCAATCACACGAGTTGCATCTGATATATTGCAGGAGTTTTTATTTTTTTTGAGAATTATATTGC
AGGAGTATTTGAAAGATAAGATAGCACAAAA---ATATCACAAACTTTAGAGAAAGTTCTAACTATGTGTTAGCTGCGAA
TCAACCTGTAGTTAGATGGTTAGGTAGACAGTGGTATCCCTAACCCATCAGGGTTTAAATCTTGATGCTCGCATTTATTA
GTAGA-TTACTTTAGGATTTTCGGCGACGCGCGCTCAATGGGAAGAGACGCCTCGTCGACTATGAGGCGCATTTGGTGAC
TACGTCAATCTCAAGATGATATGTCGACTCAGTCTTTCGGAGGTGGTCATAGGGGTAGAGCATGCGTATATGTTTATAGG
AATGAGTGTATGCGCGTATAGTGTCTAAAAAAAACTATGTGTTAGCTAGCTAGCTGGTCTAGCTAGGTCAACTATGGGAT
CCCCATAAATTAACTCCGACGCGCAAAAAT---------------------ATGGTCCCAAAGAATCAGCAGTATCCATT
AAT---TTACCAAATAAAAATGCGAAAAATTGCAATCAGTGATCTCAAAAATAATTTTATGCATAAATAAATCTGATAAT
AAAAATTGAGCAATCCAGAGTCAAAACAGTGTCGCATCCATGCAGACGCAACGGAGTCCAGATA--GGCTTATAAAGAAC
AGCAGCACGCGCAGGCGCGCACGTCGTCGGAGCTAGCTTGGCAACGACCGACCATGGTGATGGCGGAGCCGGAGGAGACC
CCGAGATCCCAGAGGCCGTTGGCGGGCGGTTGCGCCGTGGCCGGCGATCCGTCCCAGCCCGCGGCGGCGACACCTCGGCG
GCTGACGGTGTGGTGCAAGTCGCTGGTGTTCCGCGGCGACGGGTACACGGTGTTCGACGACGCGGACGGACGGATGGTGT
TCCGCGTGGACAACTACGGCGTCGGGCCGGGAAGCATGGCGCTCATGGACCACGCCGGCCGCGTCCTCCTCACCGTCCGC
CGCCGCCAACGCAAGGTGATCACTGATCGTGATCGATCGGGTAGATCTATTCTA----TCTACTTTTTTTTTGC------
-TATTATACATTACACGCACTGATTAATTTGCTTCATGCATGACTTGAACCCGTTCGACAATTGGCCGCATGCAGATGCT
GAGCTTGATGCCGGAGACATGGGAGGTGTACAATGGCGACGTCGACGACGACTCGAACTCGAACGACGGCCACGGTGAGC
CGCACCTCATGATGAGAGCCACCAAGGACCTGGGCAGGTCCAACTGCACCGCCTCTGTGCATGCCGTGGACGAGCCACAA
CTCTACCGCTTGAGCTGGTCCCGGCGGGAGGAGTTTTCGAGGATCTACCGGCACAGCTCGACCGGCGACGAGACGCTCAT
CGCCGAGGTGCGGCGGAAACGAGGGGGTCCAGAGAAGGCAACATTGCTGGGCAAGGACGTGCTCTCGCTGGTGGTGCAGC
CGGGGATGGACCTTGCCATCACCATGGCCATGCTCATGATCTCCAATTCGTACCGATGACCCCAACCCA-CCTGAATCAC
CAGGCGAACAAATGTTCATGCATATAGAATCTTCTAGAACATTTCGGAGGTCGTGGAAGAAGAAACACGTCAGTATACCT
ATTGTAAATCCCCATATTCTTTGGCA-TTCATTTCAATGTTGCATTCATCCTTCCAGAACAGTTGCAATGTAAACCTTGC
AGTGTTGCTGAAGTACTGAACAGGTCTGCTATTCTGCTACCATTTCATCCAAGGCCACACACCATGTTCCCAATAGAGAT
ACCAATAACATGGAAAAGGTAGGCAAGCAA-GCAAAGACGTACACATCACAACACTAGCCAAACAAACATCACCAAGTGT
TTACTTCCCAGGGCAAAACAACTCACATGCTACAGCTAATTTACAGATCCTACAGATTCCTCCTCGTCTTCTTGTGTGAT
GGGTTTGCGCCATGTCGA-TACGTAGCAGCATTGTCGTGCAAATCACGGCGAGAACAGCCGCTGCGTTGCTAGGCTTACA
GCTGGGTACTCGCTGTGCCTGGCCGCAGCCTGCCCGAATTCATCACGCCCCTCGCAGTTGTCTAACATAGGGAGAAAAAT
GTATTAAGTACAAGGGCAAT-----GTCTATGGGTAGTTAACCGATCCCTAATTGGAAGAGCTTACCTCAAAGAAAGAGT
TAAAGTTCAGTCTCATCAGAAACTGCCTCAGGAAAGGTGCTCTCTGACTTCCCGCAAGTCGACTACTCCTTAGGATAGTG
TACAACGAATTTGATTTCTTGTTGAACTCCTGAATATCACCAAATACTAGGTATGTAAGTTTATGCTATATA--CTAGGA
AACTAAGCAAAAGGCTGGCTAGCTTAGACATCCATGAGGATGTGCCA-------------TCCCTATTTGTTCACAGAAG
GCCGATAGTGTTGGGTGGGACAATACCTCAGTTATGTGATCAATCTCAAACATGTTTGCGCCTGTTTCGTATTGCTCGAT
ACTCCAGCAGAACTGCAAGCAGAGCTTCAT
>SNPs
SSSSSSSSSSS----------S-------------------S--------------------------------------
-S-----S------S--------------------------S-------------------S------------------
-------------S---------S-----S-------------------------------SSS----------------
---------------------------------------------S----------------------------------
-------SS---S----------------------------------S--------------------------------
----------S-------------------------------------------------------S-------------
------------S-----------------------S-------------------------------------------
--S----------------------------------------------------------------------------S
-------------------------------SSS--S--------------S---------SSSSSSSS-SS--------
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-----------------------------------------------------------S-------------S---S--
-----S------------------------SSSSSSSSSSSSSSSSSSSSS-----------------------------
---SSS----------S--------------------S------------------S----------S------S-----
------------------S---------------------------------------------SS-------------S
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------S------------------------------------S-------------------------S--------S-
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-------------------------S------------------------------------------------------
------------------------------------------------------SSSS-------S-------SSSSSSS
S--S--------------S----------S-----------------------------------------------S--
-------------------------------------------------------------------------S------
---------------------S------------S---------------------------------------------
-------------------------S------------------------S--------S---S----------------
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--------------------------S---------S-------------------------------------------
------------S------------------S------------------------------------------------
--------------S-------------------------------S---------------------------------
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---------------------S--------------S-----------------------S----S--S-----------
------------------------------------------------------------------------------S-
----S--------------------------------------------S------------------------------
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-------------------------------------------S------------------------------------
----S----------------------------------------------S------S---------------------
---S--S-----S-------------------------------------------------------------------
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>forward_1038
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----------------------------------------------------------CCAGCTAGGTCAACTCTGGC--
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>reverse_1946
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-------------------------AGGAGGAGTGGTCGAGGATC-----------------------------------
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>forward_1758
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----------------------------------------------------------CAATTGGCCGCATGCAGATT--
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>reverse_2597
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------------------------------------ATGCAAATCACGGCGAGAAC------------------------
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