>input_sequence_68444
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----------ATGGGCAGCAAGTCGGAGCAGCGCCTGGACTACGTGCTGGTGCCTCTGGGCCTGGCGGTGATGGTGGGGT
ACCACCTGTGGCTCCTCCTCCGCATCCGGCGACGCCCGGCCACCACCGTCATCGGTATCAACGCCATCAACCGCCGCATC
TGGGTGCGCCACATCATGGAGGACCCCTCG--------------------------------------------------
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----------------------------------------GGGAAGCACGCCGTGCTAGCGGTGCAGACGATGCGCAACG
CCATCATGGACTCCTCCGTGCTTGCCTCCGTCGCCATCACCCTCAGCTCCCTCGTCGCAGCTCTCATGGCGAGCGGCGCC
GCCCACGGCCTCTTTTCCGGCACCGCCAGCTCCGCCCAGAACAACAGCAAGAACAACATCGTGTTGGGCGCGGCGGGGGA
GGCGGCGCTGTCCGTCAAGTTCCTGGACATCCTCGTCTGCTTCCTGGTGGCGTTCCTCCTCAACGTGCAGTCCATCCGGT
ACTACAGCCACACAGGCGTCCTCGTCAACGTGCCGCTCCAGGCGCACCGCCATCACCGCCCCGGCCTCGCCATCGACTAC
GTCACCTCCACACTCAACCGCGGCAGCTACTTCTGGTCGCTCGGCGTCCGCGCATTCTACTTTTCATGCCCGGTGTTCCT
CTGGCTCTTCGGGCCCATCCCCATGTTCGCCGCATGCGTCGCCATGGTCTGCACGCTCTACTTCCTCGACGTCTACAAGG
AGTGGGATAGGGAGGAGGAGGGCGACGGGCTCGTCGCCGAGGATGGCGAAGGTGACCGCGAGGAGGAAGGAGGGACGAAG
ATGGCTACCAGTTCGGTCTGA-----------------------------------------------------------
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>chr2D_1_TraesCS2D01G419600
CTAGCCACACCCATAGAGAAAATTTAAATGAGGCAATTTGCAATTTTATACTCCAACAAGATTGT-CTGACTCCATCAAG
GAGGAGTGATGATGGGGGTGCGTTTTTAGCTTGTTCCAGTGCTTGTAGTCGTCACTAGGTGGTATATGGATCCAGTTGTA
TTTTTTATTA-TATATTTCTAGTGCTCTTGTACTGTCATGATTGATTGTGAATAGATCAAAAAATTCTCTCTAAAAAAAT
AGGTTGCCAAAAACTGGAATTCACTCTTTTATCCCCATAGTTGAATAGTATGTTTACCACAATAGCTACTCCCTTCATAA
AGAAATATAAAAACGTTTAGATCACTAAATGTGATGATCTAGACGCTCTTATATATCTTTACAGAGGGAGACATGTCATT
CTTCTAATTTCTGAACTTGGGTCAGTGAATTTTGGATAAGCTCGTAGGAGTGA--------AGGGATAAGCTCGCCGGAG
GCGAGGAAGAAGCTCGGCAGGCTACCCATCATCTATATT---------AGGGTGGGGACGGCAGCACGGCCGTGATGCTG
GTTCGCCGGAGAAAAAACCGATCATTGCACGGGCTAGAGGGATGGCGGGGGATGATGCCCGCATGACGATGGGAGGTGGT
TCCGTGAAGGGCAGAGCAGCGAGGCTGCGCGGGAGCACTGTCGGCCGCGGGTGGTGGTGGCAGGCGGTTCGGCCGGCGGT
CTGTACGGCGGTCAAGAGAAGGAGACGAGCTGGAGGAAGAAGGGATACGCTTACCTGTAACTGTAACCAC-GTTTACAGT
TCACGTGCCCATCACATTTACTACTACACATGCGTTCGCATATGAAAATAGGTGCAAGGTCCAAGACGTTGCCAATTTCT
ATGTGAGATTTAATTGACAAATAAATTCTTAGCACTGCTAGCTCCTACTACTATATATTTAGTG----------------
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--------CACTCCTTCGGCAGCTCAGCTACCTCAGTCGCTAACATACGCCTCCGGTGTAG------GAGCGGCAGGAGG
AGCAGAAGCAATGGGCAGCAAGTCGGAGCAGCGCCTGGACTACGTGCTGGTGCCTCTGGGCCTGGCGGTGATGGTGGGGT
ACCACCTGTGGCTCCTCCTCCGCATCCGGCGACGCCCGGCCACCACCGTCATCGGTATCAACGCCATCAACCGCCGCATC
TGGGTGCGCCACATCATGGAGGACCCCTCG--------------------------------------------------
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----------------------------------------GGGAAGCACGCCGTGCTAGCGGTGCAGACGATGCGCAACG
CCATCATGGACTCCTCCGTGCTTGCCTCCGTCGCCATCACCCTCAGCTCCCTCGTCGCAGCTCTCATGGCGAGCGGCGCC
GCCCACGGCCTCTTTTCCGGCACCGCCAGCTCCGCCCAGAACAACAGCAAGAACAACATCGTGTTGGGCGCGGCGGGGGA
GGCGGCGCTGTCCGTCAAGTTCCTGGACATCCTCGTCTGCTTCCTGGTGGCGTTCCTCCTCAACGTGCAGTCCATCCGGT
ACTACAGCCACACAGGCGTCCTCGTCAACGTGCCGCTCCAGGCGCACCGCCATCACCGCCCCGGCCTCGCCATCGACTAC
GTCACCTCCACACTCAACCGCGGCAGCTACTTCTGGTCGCTCGGCGTCCGCGCATTCTACTTTTCATGCCCGGTGTTCCT
CTGGCTCTTCGGGCCCATCCCCATGTTCGCCGCATGCGTCGCCATGGTCTGCACGCTCTACTTCCTCGACGTCTACAAGG
AGTGGGATAGGGAGGAGGAGGGCGACGGGCTCGTCGCCGAGGATGGCGAAGGTGACCGCGAGGAGGAAGGAGGGACGAAG
ATGGCTACCAGTTCGGTCTGAGAGACTGAGACCAGCACC---CCGGCCAGCGATCTTGACGGTTCAACTTCTCGTTGAAT
TTAGATCCATGGTTAGGATTGCGGTCAGAAAAATAAATAAACCGATGGCTAGGATTTACCGGTGATGTGTACGGTGTTGC
---ACTAGTAGCAATTACGTGCATGCAAGATTTGTTTTACCAA-TTCGCATGTATTTGTTCATCGGATTGCCT--TATTT
TGCATATCGTTAAGATTGGAGTACCTTTATTGTTTTGACTCCTTAGGGCTTTTTTTAGGAAAACTTATGATGTATTCATC
AACTGTCAAGATAATACAAAGAACACCTGAAGTAAAAAATACATCCAGATCCGTAGCCCACCTAGCGCGACAACTACAAA
CACTGAAGCGAGTCAAAAGCACGTCGTCATCATCACCCCTTCCTCGTTGAAGCCAGAAGCCAGGTAAACCTTGTTGTGTT
TTGACTCTCTAGTTGATTTTGCTGTGGAAAGATTATACTCGAAAAGTGCACATACTAGTACAGCACATGCAAACGGGTTG
AGACCCCATGCAGACACATGGGACTTTGCAACGTCTAGGACTCCGAACCCACTTCAATGTGCACAAACTGAATGTTGTGG
GCATCCAGATTTCCGCTACAAAAACTATAGAAAAATTTCATTTGTATTGTAGTATACGTCTCCACGCGTCCTTCGACGAT
ACTTGACGGCACATCAGGACAAGTACATATCAGCGAGAATTTTTATTTCATCTTCACGAAGTCGCCGCCATCTCACCTTG
AGCAGGACACAAGCCCTAATAAAACTTAAAGAAATACCTAAAAACGAAGTCCTCCCACCAACGAAGGCCCAGATCCACCG
CGCCCCATGGCCCTAAGGCCATAGGAGACGAGGCAGATGCGCAGTGTAGCTGAGGACGGCAGGAACCCTAACCGCCTTTT
CCTTGGAGGAGAGACGCGTGCGTCACAATTTTTGTTAGGCCACGGTTTGCGTTACTCGAGGTTTTTCTTC
>chr2B_13
ATAGAA------------AAAAGTTAAATGAGGCAATTTGCAATTTTATACTCCAACAAAATTTTCCTGACTCCATGAAG
GAGGGGTGACGATGGGGGTGCGCTTTTAGCTTGCTCTGGTGCTTGTAGTCGTCGCTAGGTGGTATATGGATCTTGTTGTG
TTTTTTATTATTATATTTCTAGTGCTCTTGTACTGTCATGATTGATTGTGAATAGATCAAAAAATTCTCTCTAAAAAAGT
AGGTTGC-AAAAATTGGAATTCACTTTTTTATCCTCATAGTGGAATAGTATGTTTACCACAATAGCTACTCCCTCTACAA
AGAAATATAAAAACGTTTAGATCACTAAATGTAGTGATCGAAACGCTTTTATATATCTTTACAGTGGGAGACATGTCATT
CGTCAGATTTCTGAACTTGGGTTAGTAAATTTTAGATTGAATGAAACAACAACCACAGGGGAGGGATAAGCTCGCTGGAG
GCAAGGAAGAAGCTCGGCAGACTACACCATCGGCTATCTTAGGATGGGAGGGTGGGGGCGGCAGCACGACGGAGGTGCTA
GCTTGCCAGAGAAAAAACCGATCATTGCAGGGGCTAAGGGGATAACCTGGGACGATGCCCGCATGACGGTGGGAGGAGGT
TCCGTGAAGGACGGGGCGGCGACGCTGCGCGGGAGCACCACTGGCCGCGGGTGGTGGTAGCAGCCGGTTCGGCCGGCGGG
TCTGGAAAA----------------------GGAAGAAGAAGGGATACACTTACCTGTAACCACGCCCTATGTTTACAGT
TCACGGGCCCATCACATTTACTTACC------------------AAAATAGGTGCAAAGTCCAAGACGTTGCCAATTTTC
ATGTGAGATTTAATTGACAAATAAATTCCTAGTACTCCTAGCTCCTACTGCTATATATTTAGGGGCTGTTTGATTCCCAG
CCACAATTTGCCAAGTCAAAATTTAACAGTCACAGTTTGCCAAGCATGTCTTTGGTTTTTACCACACTTTGGCTTGCCAC
ACTTTATTGCCCTTATGGCCCACTTGTCAAAAAGACAATTTTTTTGCCAACTTTTGCCAAAGTTTGGCGTCTAATTTTTT
AGCCACACTTGTGTGGCTTGTCATACTTGTGTGACTAGCTACACTTTGACTTGGCCACACTAGTCTCCAATCAAACAGAC
CCTAAGTACACTCCTTCGGCAGCTCAGCTACCTCAGTCGGTAT-ATACGCCTCCGGTGTAGCAGCAGGAGCGGCAGAAGG
AACAGAAGCAATGGGCAGCAAGTCGGAGCAGCGCCTGGACTACGTGCTGGTGCCTCTGGGCCTGGCGGTGATGGTGGGGT
ACCACCTGTGGCTCCTCCTGCGCATCCGGCGACGCCCGGCCACCACCGTCATCGGCATCAACGCCATCAAACGCCGCATC
TGGGAGCGCCACATCATGGAGGACCCCTCG--------------------------------------------------
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----------------------------------------GGGAAGCACGCCGTGCTAGCGGTGCAGACGATGCGCAACG
CCATCATGGCCTCCTCCGTGCTCGCCTCAGTCGCCATCACCCTCAGCTCCCTCGTCGCCGCCCTCATGGCCAGCGGCGCC
GCCCACGGCCTCTTTTCCGGCACCGCCAGCCCCGCCCAGAACAACAGCAAGAACAACATCGTGTTGGGCGCGGCGGGGCA
GGCGGCGCTGTCCGTCAAGTTCCTGGCCATCCTCGTCTGCTTCCTGGTGGCGTTCCTCCTCAACGTGCAGTCCATCCGGT
ACTACAGCCACACAGGCATCCTCGTCAACGTGCCGCTCCAGGCGCACCGCCACCGCCGCCCCGGCCTCGCCATCGACTAC
GTCACCTCCACACTCAACCGCGGCAGCTACTTCTGGTCACTCGGCGTCCGCGCATTCTACTTTTCATGCCCGGTGTTCCT
CTGGCTCTTCGGACCCATCCCCATGTTCGCCGCATGCGTCGCCATGGTCTGCACGCTCTACTTCCTCGACGTCTACAAGG
AGTGGGATAGGGAGGAGGAGGGCGAGGGGCTCGTCGCCGAGGATGGCGAAGGTGACCGCGAGGAGGAAGGAAGGACGAAG
ATGGCTACCAGTGCGGTCTGAGAGATTGAGATCAACACCCGGCCGGCCGGCGATCTTGACGGTTCAACTTCTCGTTGAAT
TTAGATCCATGGTAAGGATTGCCGTCAGAAAA-TAAATATACAGATGACTAGGATTTACTGGTGATGTGTACGGGGGTGT
TGTACTAGTAGCAATTACGTGCATGCAAGATTTGTTTTACCAAATTCGCGTGTATCTGTTCATCAGATTACCTCTTATAT
TGCATATCGTTAAGATTGGAGTACCTTTATTGTTT---------------------------------------------
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>chr7D_1021
GCGCT---------------------------------------------------------------------------
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------------------------------------GGACTACGTGCTGGTGCCTCTGGGGCTGGTGCTGATGCTGGGAT
ACCACGGGTGGCTTCTCCTCCGTATCCAGCGTCGCCCGGCGACCACCGTCATCGGTGTCAACGCCATCAACCGCCGCATC
TGGGTCCGCCACATCATGGAGGTCCGTCCGCCGTTAAGCATGCACCCACCC-ATTTCCTGCGATCGATCCATCATCGCGT
TCATCCTCTACTCGCAGAGCCATTGTTTCTCCGGAGTTTTCTTTCACCGATTCACCTTCGAAATTTCGGTTTTTATT---
-CAACTGATCAAGATCGATGGGTGCATGCAGGAGCCGTCCGGGAAGCACGCGGTGCTGGCGGTGCAGACGATCCGGAACA
ACATCATGGCGTCGACGCTGCTGGCGTCCACGGCCATCACACTCAGCTCGCTCATCGCCGTGCTCATGTCCGGCGGCGGC
GGGGGAGGGCCAGGAGCTGGCGGCGGGGGCCTCCTCCCGGACGCGCCGCTG---------GTGGTGGGCGCCACGGGGGA
GGCGGCTCTGTCGGCCAAGTTCTTCGCCATCCTCGTCTGCTTCCTGGTGGCCTTCCTCCTCAACGTGCAGTCGATCCGGT
ACTACAGCCACACCAGCACCCTGGTGAACGTCCCGATCCGAGCACACCGCCTCCGCCGCCCGGGCCTTGCCGTGGACTAC
GTCACCGGCACGCTCAATCGCGGCAGCTACTTCTGGTCGCTTGGCGTCCGGGCATTCTACTTCTCCTGCCCGGTCTTCCT
CTGGCTCTTCGGGCCCATCCCCATGTTCGCCGCCTGCGTCGTCATGGTCTGCGTGCTCTATTTCCTCGACGTGTGCGAGG
ACTGGGA---GGAAGAAGAGGGCG--------------------------------------------------------
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>chr7B_1021
GCGCT---------------------------------------------------------------------------
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------------------------------------GGACTACGTGCTGGTGCCTCTGGGGCTGGTGCTGATGCTGGGAT
ACCACGCGTGGCTTCTCCTCCGTATCCAGCGTCGCCCTGCGACCACCGTCATCGGCGTCAACGCCATCAACCGCCGCATC
TGGGTCCGCCACATCATGGAGGTCCGTCCGCCGTTAACCATGCACCCACCCCATTTCCTGCGATCAATCCATCATCTCGT
TCATCCTCTACTCGCAGAGCCATTGTTTCCCCGGAGTTTTCTTTTACCGATTCACCTTCGAAATTTCGGTTTCTATT---
-CAACTGATCAAGATCGATCGGTGCATGCAGGAGCCGTCCGGGAAGCACGCGGTGCTGGCGGTGCAGACGATCCGGAACA
ACATCATGGCGTCGACGCTGCTGGCGTCCACGGCCATCACACTCAGCTCGCTCATCGCCGTGCTCATGTCCGGCGGCGGC
GGCGGAGGGCCAGGAGCTGGCGGCGGGGGCCTCCTCCCGGACGCGCCGCTG---------GTGGTGGGCGCCACGGGGGA
GGCGGCTCTGTCGGCCAAGTTCTTCGCCATCCTCGTCTGCTTCCTGGTGGCCTTCCTCCTCAACGTGCAGTCGATCCGGT
ACTACAGCCACACCAGCACCCTGGTGAATGTCCCGATCCGAGCACACCGCCTCCGCCGCCCGGGCCTTGCCGTGGACTAC
GTCACCGGCACCCTCAATCGCGGCAGCTACTTCTGGTCGCTCGGCGTGCGGGCATTCTACTTCTCCTGCCCGGTCTTCCT
CTGGCTCTTCGGGCCCATCCCCATGTTCGCCGCCTGCGTCGTCATGGTCTGCGTGCTCTATTTCCTCGACGTGTGCGAGG
ACTGGGA---GGAGGAACAGGGCG--------------------------------------------------------
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>chr7A_1021
GCGCT---------------------------------------------------------------------------
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------------------------------------GGACTACGTGCTGGTGCCTCTGGGGCTGGTGCTGATGCTGGGAT
ACCACGCGTGGCTTCTCCTCCGTATCCAGCGTCGCCCTGCGACCACCGTCATCGGCGTCAACGCCATCAACCGCCGCATC
TGGGTCCGCCACATCATGGAGGTCCGTCCGCCGTTAACCATGCACCCACCC-ATTTCCTGCGATCGATCCATCATCGCGT
TCACCCTCTACTCGCAGAACCATTGTTTCTCCGGAGTTTTCTTTTACCGATTCACCTTCGAAATTTCGGTTTTTATTTAT
TCAACTGATCAAGATCGATCGGCGCATGCAGGAGCCGTCCGGGAAGCACGCGGTGCTGGCGGTGCAGACGATCCGGAACA
ATATCATGGCGTCGACGCTGCTGGCGTCCACGGCCATCACACTCAGCTCGCTCATCGCCGTGCTCATGTCCCGCGGCGGC
GG-GGAGAGCCAGGAGCTGGCGGCGGGGGCCTCCTCCCGGACGCGCCGCTG---------GTGGTGGGCGCCACGGGGGA
GGCGGCTCTGTCGGCCAAGTTCTTCGCCATCCTCGTCTGCTTCCTGGTGGCCTTCCTCCTCAACGTGCAGTCGATCCGGT
ACTACAGCCACACCAGCACCCTGGTGAACGTCCCGATCCGAGCACACCGCCTCCGCCGCCCGGGCCATGCCGTGGACTAC
GTCACCGGCACGCTCAATCGCGGCAGCTACTTCTGGTCGCTCGGCGTGCGGGCATTCTACTTCTCCTGCCCGGTCTTCCT
CTGGCTCTTCGGGCCCATCCCCATGTTCGCCGCCTGCGTCGTCATGGTCTGCGTGCTCTATTTCCTCGACGTGTGCGAGG
ACTGGGA-------------------------------------------------------------------------
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>SNPs
S---SSSSSSSSSSSSSS----S------------------------------------S---S------------S---
----S----S------------S----------S--SS---------------S------------------SS-----S
------------------------------------------------------------------------------S-
-------S-----S-----------S--------S------S--------------------------------SS-S--
--------------------------------SS-----S-S-----S----------------S---------------
-S--SS----------------S---S------S---SSSS-SSS-SS-SSSS----------------------S----
--S-----------------S----S-SSSSSSSSSSS-------------------S----------S-S-S-S----S
-S-S---S---------------------S------SS-----SS-SS----S---------------S-------S---
----------S-S-S--S----S---------------SSSS----------------S----S---------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------------S------------SSSSS--SS----------
-----S----------------SSSSSSSSSSSSSSSSSSSSSS-------------S--------------------SS
----------------------------S---S---S------------S------------S-----------------
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---------------------------------------S--SS--------------------------------S---
-S------------------------------------------------------------------------------
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---------S------------S-----------------------------------S--S--------S---------
------------------------------S-------------------------------------------------
--------------------------S-----------------------------------------------------
-----------------S----------------------------------S-S-------------------------
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-------------------------S---------------------------------------------S--------
------------S------------S-----S--S-------------S-------------------------------
-------------S--------S---------S------S--S----S-----------S--------------S-S--S
-------------------------------------------------S-----S--------S----S--------S-
-----------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_746
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------GGCGGTCAAGAGAAGGAGAC------------------------------------------------------
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>reverse_2602
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-----------------------------------------CATCCAGATCCGTAGCCCAC-------------------
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