>input_sequence_68441
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-ATGGGCAGCAAGTCGGAGCAGCGCCTGGACTACGTGCTGGTGCCTCTGGGCCTGGCGGTGATGGTGGGGTACCACCTGT
GGCTCCTCCTGCGCATCCGGCGACGCCCGGCCACCACCGTCATCGGCATCAACGCCATCAAACGCCGCATCTGGGAGCGC
CACATCATGGAGGACCCCTCGGGGAAGCACGCCGTGCTAGCGGTGCAGACGATGCGCAACGCCATCATGGCCTCCTCCGT
GCTCGCCTCAGTCGCCATCACCCTCAGCTCCCTCGTCGCCGCCCTCATGGCCAGCGGCGCCGCCCACGGCCTCTTTTCCG
GCACCGCCAGCCCCGCCCAGAACAACAGCAAGAACAACATCGTGTTGGGCGCGGCGGGGCAGGCGGCGCTGTCCGTCAAG
TTCCTGGCCATCCTCGTCTGCTTCCTGGTGGCGTTCCTCCTCAACGTGCAGTCCATCCGGTACTACAGCCACACAGGCAT
CCTCGTCAACGTGCCGCTCCAGGCGCACCGCCACCGCCGCCCCGGCCTCGCCATCGACTACGTCACCTCCACACTCAACC
GCGGCAGCTACTTCTGGTCACTCGGCGTCCGCGCATTCTACTTTTCATGCCCGGTGTTCCTCTGGCTCTTCGGACCCATC
CCCATGTTCGCCGCATGCGTCGCCATGGTCTGCACGCTCTACTTCCTCGACGTCTACAAGGAGTGGGATAGGGAGGAGGA
GGGCGAGGGGCTCGTCGCCGAGGATGGCGAAGGTGACCGCGAGGAGGAAGGAAGGACGAAGATGGCTACCAGTGCGGTCT
GA------------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G441600
AAAATTGGAATTCACTTTTTTATCCTCATAGTGGAATAGTATGTTTACCACAATAGCTACTCCCTCTACAAAGAAATATA
AAAACGTTTAGATCACTAAATGTAGTGATCGAAACGCTTTTATATATCTTTACAGTGGGAGACATGTCATTCGTCAGATT
TCTGAACTTGGGTTAGTAAATTTTAGATTGAATGAAACAACAACCACAGGGGAGGGATAAGCTCGCTGGAGGCAAGGAAG
AAGCTCGGCAGACTACACCATCGGCTATCTTAGGATGGGAGGGTGGGGGCGGCAGCACGACGGAGGTGCTAGCTTGCCAG
AGAAAAAACCGATCATTGCAGGGGCTAAGGGGATAACCTGGGACGATGCCCGCATGACGGTGGGAGGAGGTTCCGTGAAG
GACGGGGCGGCGACGCTGCGCGGGAGCACCACTGGCCGCGGGTGGTGGTAGCAGCCGGTTCGGCCGGCGGGTCTGGAAAA
----------------------GGAAGAAGAAGGGATACACTTACCTGTAACCACGCCCTATGTTTACAGTTCACGGGCC
CATCACATTTACTTACC------------------AAAATAGGTGCAAAGTCCAAGACGTTGCCAATTTTCATGTGAGAT
TTAATTGACAAATAAATTCCTAGTACTCCTAGCTCCTACTGCTATATATTTAGGGGCTGTTTGATTCCCAGCCACAATTT
GCCAAGTCAAAATTTAACAGTCACAGTTTGCCAAGCATGTCTTTGGTTTTTACCACACTTTGGCTTGCCACACTTTATTG
CCCTTATGGCCCACTTGTCAAAAAGACAATTTTTTTGCCAACTTTTGCCAAAGTTTGGCGTCTAATTTTTTAGCCACACT
TGTGTGGCTTGTCATACTTGTGTGACTAGCTACACTTTGACTTGGCCACACTAGTCTCCAATCAAACAGACCCTAAGTAC
ACTCCTTCGGCAGCTCAGCTACCTCAGTCGGTAT-ATACGCCTCCGGTGTAGCAGCAGGAGCGGCAGAAGGAACAGAAGC
AATGGGCAGCAAGTCGGAGCAGCGCCTGGACTACGTGCTGGTGCCTCTGGGCCTGGCGGTGATGGTGGGGTACCACCTGT
GGCTCCTCCTGCGCATCCGGCGACGCCCGGCCACCACCGTCATCGGCATCAACGCCATCAAACGCCGCATCTGGGAGCGC
CACATCATGGAGGACCCCTCGGGGAAGCACGCCGTGCTAGCGGTGCAGACGATGCGCAACGCCATCATGGCCTCCTCCGT
GCTCGCCTCAGTCGCCATCACCCTCAGCTCCCTCGTCGCCGCCCTCATGGCCAGCGGCGCCGCCCACGGCCTCTTTTCCG
GCACCGCCAGCCCCGCCCAGAACAACAGCAAGAACAACATCGTGTTGGGCGCGGCGGGGCAGGCGGCGCTGTCCGTCAAG
TTCCTGGCCATCCTCGTCTGCTTCCTGGTGGCGTTCCTCCTCAACGTGCAGTCCATCCGGTACTACAGCCACACAGGCAT
CCTCGTCAACGTGCCGCTCCAGGCGCACCGCCACCGCCGCCCCGGCCTCGCCATCGACTACGTCACCTCCACACTCAACC
GCGGCAGCTACTTCTGGTCACTCGGCGTCCGCGCATTCTACTTTTCATGCCCGGTGTTCCTCTGGCTCTTCGGACCCATC
CCCATGTTCGCCGCATGCGTCGCCATGGTCTGCACGCTCTACTTCCTCGACGTCTACAAGGAGTGGGATAGGGAGGAGGA
GGGCGAGGGGCTCGTCGCCGAGGATGGCGAAGGTGACCGCGAGGAGGAAGGAAGGACGAAGATGGCTACCAGTGCGGTCT
GAGAGATTGAGATCAACACCCGGCCGGCCGGCGATCTTGACGGTTCAACTTCTCGTTGAATTTAGATCCATGGTAAGGAT
TGCCGTCAGAAAA-TAAATATACAGATGACTAGGATTTACTGGTGATGTGTACGGGGGTGTTGTACTAGTAGCAATTACG
TGCATGCAAGATTTGTTTTACCAAATTCGCGTGTATCTGTTCATCAGATTACCTCTTATATTGCATATCGTTAAGATTGG
AGTACCTTTATTGTT-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TGTTTTGCCTCCTTAGTTGATTT
TGCCGTGGGAAGAT--TACTCCAAAAGTGCACATCTGTACTCGTACTAGTAGTCCTGGAGGAGCGCCGTACTACTCATAG
GAATAGATTTGCAGATTACTGGTACAGCACATGCAAACGGGTCGAGACCCCATGCAAACACATGGGAGCTTGCAACGTCT
AGGACTCCAAACATACTTCAATGTGCACAAACTGAACGCTATGGGGCATCCAGATTTCAGCTACGGAAACCGTAGAAAAT
TTTCATTTGTACACGGCTTCTTTCTGCTCGATTTGTATATCTCCACACGTCCTTCGATGATACTAGACACTTCAT-AAGA
CGGGGACTTATCAGAGAGAATCTTATTCCATCTTCAGATAGCTATATCACCTCTTCTTTCTGAATAGGATACAGGCCCTA
ACAAAACTCAAAGAAAAACCTAAAAATGGAGCCCTCCCGCTGACGAAGGCACGGGTCCACCGCACCCCATGACCCTAAGG
CCACATGAGACGAAGCAGATGTGCGG---------------------------------------TGGAGGAGATACGCA
TGCATCACAAATTTTGTTAGGCCACAATTTGCAGTTACTCGAGGTTTTTCTTCCACACATTGGTGTTTTTAAAAGTCAAG
CTACACATGAGACGAAGCTACTTTGTCAACTTATCATAAATTTAATATCCACCAAAATGGACAATGTGGCTTGTTCGTCA
TTTTGATTTGGTGTACGATCCTTGTAGAATATAACCTACCATCATCA
>chr2D_1
AAAACTGGAATTCACTCTTTTATCCCCATAGTTGAATAGTATGTTTACCACAATAGCTACTCCCTTCATAAAGAAATATA
AAAACGTTTAGATCACTAAATGTGATGATCTAGACGCTCTTATATATCTTTACAGAGGGAGACATGTCATTCTTCTAATT
TCTGAACTTGGGTCAGTGAATTTTGGATAAGCTCGTAGGAGTGA--------AGGGATAAGCTCGCCGGAGGCGAGGAAG
AAGCTCGGCAGGCTACCCATCATCTATATT---------AGGGTGGGGACGGCAGCACGGCCGTGATGCTGGTTCGCCGG
AGAAAAAACCGATCATTGCACGGGCTAGAGGGATGGCGGGGGATGATGCCCGCATGACGATGGGAGGTGGTTCCGTGAAG
GGCAGAGCAGCGAGGCTGCGCGGGAGCACTGTCGGCCGCGGGTGGTGGTGGCAGGCGGTTCGGCCGGCGGTCTGTACGGC
GGTCAAGAGAAGGAGACGAGCTGGAGGAAGAAGGGATACGCTTACCTGTAACTGTAACCAC-GTTTACAGTTCACGTGCC
CATCACATTTACTACTACACATGCGTTCGCATATGAAAATAGGTGCAAGGTCCAAGACGTTGCCAATTTCTATGTGAGAT
TTAATTGACAAATAAATTCTTAGCACTGCTAGCTCCTACTACTATATATTTAGTG-------------------------
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-------------------------------------------------------------------------------C
ACTCCTTCGGCAGCTCAGCTACCTCAGTCGCTAACATACGCCTCCGGTGTAG------GAGCGGCAGGAGGAGCAGAAGC
AATGGGCAGCAAGTCGGAGCAGCGCCTGGACTACGTGCTGGTGCCTCTGGGCCTGGCGGTGATGGTGGGGTACCACCTGT
GGCTCCTCCTCCGCATCCGGCGACGCCCGGCCACCACCGTCATCGGTATCAACGCCATCAACCGCCGCATCTGGGTGCGC
CACATCATGGAGGACCCCTCGGGGAAGCACGCCGTGCTAGCGGTGCAGACGATGCGCAACGCCATCATGGACTCCTCCGT
GCTTGCCTCCGTCGCCATCACCCTCAGCTCCCTCGTCGCAGCTCTCATGGCGAGCGGCGCCGCCCACGGCCTCTTTTCCG
GCACCGCCAGCTCCGCCCAGAACAACAGCAAGAACAACATCGTGTTGGGCGCGGCGGGGGAGGCGGCGCTGTCCGTCAAG
TTCCTGGACATCCTCGTCTGCTTCCTGGTGGCGTTCCTCCTCAACGTGCAGTCCATCCGGTACTACAGCCACACAGGCGT
CCTCGTCAACGTGCCGCTCCAGGCGCACCGCCATCACCGCCCCGGCCTCGCCATCGACTACGTCACCTCCACACTCAACC
GCGGCAGCTACTTCTGGTCGCTCGGCGTCCGCGCATTCTACTTTTCATGCCCGGTGTTCCTCTGGCTCTTCGGGCCCATC
CCCATGTTCGCCGCATGCGTCGCCATGGTCTGCACGCTCTACTTCCTCGACGTCTACAAGGAGTGGGATAGGGAGGAGGA
GGGCGACGGGCTCGTCGCCGAGGATGGCGAAGGTGACCGCGAGGAGGAAGGAGGGACGAAGATGGCTACCAGTTCGGTCT
GAGAGACTGAGACCAGCACC---CCGGCCAGCGATCTTGACGGTTCAACTTCTCGTTGAATTTAGATCCATGGTTAGGAT
TGCGGTCAGAAAAATAAATAAACCGATGGCTAGGATTTACCGGTGATGTGTACGGTGTTGC---ACTAGTAGCAATTACG
TGCATGCAAGATTTGTTTTACCAA-TTCGCATGTATTTGTTCATCGGATTGCC--TTATTTTGCATATCGTTAAGATTGG
AGTACCTTTATTGTTTTGACTCCTTAGGGCTTTTTTTAGGAAAACTTATGATGTATTCATCAACTGTCAAGATAATACAA
AGAACACCTGAAGTAAAAAATACATCCAGATCCGTAGCCCACCTAGCGCGACAACTACAAACACTGAAGCGAGTCAAAAG
CACGTCGTCATCATCACCCCTTCCTCGTTGAAGCCAGAAGCCAGGTAAACCTTGTTGTGTTTTGACTCTCTAGTTGATTT
TGCTGTGGAAAGATTATACTCGAAAAGTGCACA-----------------------------------------------
----------------TACTAGTACAGCACATGCAAACGGGTTGAGACCCCATGCAGACACATGGGACTTTGCAACGTCT
AGGACTCCGAACCCACTTCAATGTGCACAAACTGAATGTTGTGGG-CATCCAGATTTCCGCTACAAAAACTATAGAAAAA
TTTCATTTGTATTGTAGTATACG----------------TCTCCACGCGTCCTTCGACGATACTTGACGGCACATCAGGA
CAAGTACATATCAGCGAGAATTTTTATTTCATCTTCACGAAGTCGCCGCCATCTCACCTTGAGC-AGGACACAAGCCCTA
ATAAAACTTAAAGAAATACCTAAAAACGAAGTCCTCCCACCAACGAAGGCCCAGATCCACCGCGCCCCATGGCCCTAAGG
CCATAGGAGACGAGGCAGATGCGCAGTGTAGCTGAGGACGGCAGGAACCCTAACCGCCTTTTCCTTGGAGGAGAGACGCG
TGCGTCACAATTTTTGTTAGGCCACGGTTTGC-GTTACTCGAGGTTTTTCTTCCACACATTATTGTTTTCAAAAGTAAAG
CTGCACA-------------------------------------------------------------------------
-----------------------------------------------
>SNPs
----S-----------S--------S------S--------------------------------SS-S-----------
-----------------------SS-----S-S-----S----------------S----------------S--SS---
-------------S---S------S---SSSS-SSS-SS-SSSSSSSSSSSS--------------S------S------
-----------S----S-SSSSSSSSSSS-SSSSSSSSS---------S----------S-S-S-S----S-S-S---S-
--------------------S------SS-----SS-SS----S---------------S-------S------------
-S-S-S--S----S---------------SSSS----------------S----S---------------SSSSSSSSSS
-------------------------S-------------S------------SSSSS--SSS--------------S---
-------------SSSS-------------------------------S--------------------SS---------
-------------------S---S---S------------S------------S-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
------------------------------S--S------------------SSSSSS---------S----S-------
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----------S-----------------------------------S--------------S-------------S----
----------------------------------------------------------------------S---------
---S-----S-----------------------------S--S--------S----------------------------
-----------S-----------------------------------------------S--------------------
-------S----------------------------------------------------------------------S-
---------------------------------S-S--------------------------------------------
-------------------S-----------------------------------------------------S------
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------S---------------------------------------------S--------------------S------
------S-----S--S----SSS------S--------------------------------------------S-----
---S----------------S--S----S-----------S--------------S-S--SSSS----------------
------------------------S-----S-----S--------S----S--SS----S--------------------
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----------------------------------------------------------------S---SS----------
---S----S------------S-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS----S---------------------S-------------S----------SS-----------
--------S---SS----------------------S-S-S----S------------S-----SS----SS-------S
-----------SSSSSS-SSSSSSSSSSSSSSSSSSSSS-------S----------S------S---SSSS-----S--
-SS-S--S------S------S--SS-SSSSSS-SSSSS-SS-SSSSSS-S---SSSS-SSSSSS----S---S------
-S------S-------S---------S-S--S------S-SS--------S-S-S--------S-------S--------
---S-S-------S-------S--S-------------------------------------------------S----S
---S------S--------------SS-----S----------------------------SS------S------S---
--S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_252
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------------------------------------------------------------------------CAAGGAAG
AAGCTCGGCAGA--------------------------------------------------------------------
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>reverse_2421
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--------------------GGTACAGCACATGCAAACGG----------------------------------------
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