>input_sequence_68439
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--ATGATTTGCCTCAGAGCCATCCCCTCCCCTCGACTCCTCCACCTACCCCTACCCCGCCTCGCCTCCTCCCCGCTCCGC
CGCCTCAGGCCCT---------------CCGCCGCAGCCATGTCCTCCTCCCCCTCCGTCGCCGCGCCCACCGTAGCGGC
ACCGGTCGAGCACATCGTGCTCATCAAGGTCCGCCCGGAGGCCGTGGCCTCGGGGGCCGCCGCGGCGATGGTCTCCGCGC
TGCAGGCGCTCTCCACGCTCGTCCCGGGGGTCTCCTACATCCACGCGGGCCCCGTGCTCCGCCTCCGCTCCCCGGCCGCC
GAGGCGCTGGGCCCCACCCACCTCCTCCACTCCCGCTACGCCACCAAGGCCGACCTCGCCGCCTACGCCCCGCACCCGGC
CCACGTGGCCGCCGTGCAGGCGCACGTCGCCCCCAACGCGCTCGACGCCACCGCCGTTGACTGGGTCAACGCCGCGGGCG
CCCCGTCCCCCGTCGCCCCCGGCGCCGCCGTGCGCCTCACCCTCGCCAAGGTCAAGGAGGGCGTGGAGGTCGGGCAGCTC
GTCGAGAAGGTGGCCGCGGCCACCAAGGACGCCGGCGAGGCCAGCGGCGCCAAGGTCAGCTTCGGGGAGAACTTCTCCCC
CGCGCGGGCCAAGGGGTACCAGTTCGGGATGGTGGCCGTGTTCGGGAGCGTCGAGGAGCTGGACGCCGTGGAGGGCGACG
GCAAGGTGGAGGAGGCCAAGGCCGCCCTCAGGCCCATGCTCGACGAGGTCATGGTGCTGGACTTCGTCGTCGACGCTCCG
GCGGCCGCGAGCCTCTGA--------------------------------------------------------------
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>chr2B_1_TraesCS2B01G198100
GTGCAATGAGAAGCCTGAATGCCCCCTATGCAGAACTCCTATTACACATTCAAGTTTAATTTGTATATATCATTCAGATT
TCTAGCAGACCATTAGCAAGGGATCAATCATATCATTCATATCCTCTAGCGCGGATCC----------TATAAAGCCAAG
GCCTGACATCCATTGTGC-GGATCATCTTTAATCAGGA-----GACATGGCCTGATGGTTTCTTATCGAGATTCGTAATC
AGTAGGGCAAAGAGCTCCCACGGGCTCCATGGCTTCCTCAAGACGAAGACATATTTATACCAACCAAAAGAAGGATG-AT
GGAAGACCAGTAGATGAAGTTGAA--ACAGTCGCGCTGTAGAGATCATCGGTAACACCAAGTACCAATCTGAAATTAAAC
AAAAGATAAGTTTTAGTGCGAACAGATA-----------TGTTCATGTTGGACACAAGTGAATTTTGTAGGGTTGAAGA-
---ATGAATGACTAGGATCATAGACCAGTCGAGCAGTGTCATACTC-TTTTGTTTTCTGCACGTACGC------------
---------------------------CCTGTACCCCATATGTATTCCTACCACA--TCTGCATTGAACATTTCGACCAG
TAAATTTACGTAAGGTTAGCTGCTTCATTATATTAACT------------------------------GGATTGCACCAT
CCTACGCATGGTTGTTGGAGCCATGGATCAATTGTATACGTGCTGACACTGACCCCGTCAGTGCTGGATGACAGTTTCTT
CCGCTGATAGCTTCCCGGCGGTCTGCAGCTCCCGAAGAAAAGACGCCGGCGGTGTGCCGTTTTTCAGCAAAGTCATCGTC
CACCAAAACAGAGCCCATGTTGTGTCGTGCACACACCGGTCACCGGCGATGCAGCGCAGCCGCCA------CCGTGCTAG
TCCGTTCGCCTCGTGCCCGGAGAAGAAGAATCCACCA-----CGGCGCCACCCACTATAAAATCCATCTTGGCTCACACA
AATGTGATGCCGCGCCG----GTCACTGTCCCCCCAGCCCCATCCCGATTTTAACCTCCTCCCCTCGCACTGACCAAAA-
CCATGATTTGCCTCAGAGCCATCCCCTCCCCTCGACTCCTCCACCTACCCCTACCCCGCCTCGCCTCCTCCCCGCTCCGC
CGCCTCAGGCCCT---------------CCGCCGCAGCCATGTCCTCCTCCCCCTCCGTCGCCGCGCCCACCGTAGCGGC
ACCGGTCGAGCACATCGTGCTCATCAAGGTCCGCCCGGAGGCCGTGGCCTCGGGGGCCGCCGCGGCGATGGTCTCCGCGC
TGCAGGCGCTCTCCACGCTCGTCCCGGGGGTCTCCTACATCCACGCGGGCCCCGTGCTCCGCCTCCGCTCCCCGGCCGCC
GAGGCGCTGGGCCCCACCCACCTCCTCCACTCCCGCTACGCCACCAAGGCCGACCTCGCCGCCTACGCCCCGCACCCGGC
CCACGTGGCCGCCGTGCAGGCGCACGTCGCCCCCAACGCGCTCGACGCCACCGCCGTTGACTGGGTCAACGCCGCGGGCG
CCCCGTCCCCCGTCGCCCCCGGCGCCGCCGTGCGCCTCACCCTCGCCAAGGTCAAGGAGGGCGTGGAGGTCGGGCAGCTC
GTCGAGAAGGTGGCCGCGGCCACCAAGGACGCCGGCGAGGCCAGCGGCGCCAAGGTCAGCTTCGGGGAGAACTTCTCCCC
CGCGCGGGCCAAGGGGTACCAGTTCGGGATGGTGGCCGTGTTCGGGAGCGTCGAGGAGCTGGACGCCGTGGAGGGCGACG
GCAAGGTGGAGGAGGCCAAGGCCGCCCTCAGGCCCATGCTCGACGAGGTCATGGTGCTGGACTTCGTCGTCGACGCTCCG
GCGGCCGCGAGCCTCTGATGGGGGGTTTCAGGTTGATTTCGGAT------------------------------------
------------------------------------------------------------------------------CC
GAGTGTGCTGCCGATTTGGGAATAATGGAGTCCT----TTGTGATATCTGTATCGATCTTGAGATGAATAACAATCAATT
GATGTGCCTGTTGTGTGCTCCCAAGTTTTTACATGCCGATGCATCCGGCAGTTGGTACTCCAGTTTCTAATACCAGGAAT
CAGGAACCAAGCGGCAGTCTCTAATGATTGTGCCATTTGTTCACAACCCTTCTCATCGCTAAACATGTGATATTAAGCAT
GTGACCGACATCTCTGCCTCAGTGGTATTCAAGCGTATTCGTTGGCATTTGAATGTGGCGGCTCATGTATCAG-CCAAGT
CATGTAAAAATTCTGTTCGTT-TGCGTATTTTTCATTCTACTCCGGATTCTTGTAATGTTGTCATCTGATCAATAAAGTA
TCGACGACGACGACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAGCCTTTAGTCCCAAACAAGTTGGG
GTAGGCTAGAGGTGAAACCCATAAGATCTCGCAACCAACTCATGGCTCTGGCACATGGATAGCAAGCTTCCACGCACCCC
TGTCCATAGCTAGCTCTTTGTCGATACTCCAATCCTTCAGGTCTCTCTTAACGGACTCCTCCCATGTCAAAATTTTTGGT
CACGCTTGTCATTCTTCTTAAGCAATGCTCAATGACTCTCTCCCATAGCTTCATTGTATGGCTCATCAGCTTAATTCCAC
GGTAATTAGTACAACTCTGAACATCCCCCTTGTTCTTGAAGATTGGTACTAATATACCCCGTCTCCATTCTTCTGGCATC
TTGTTTGCCCGAAAAATGAGGTTGAAAAGCTTGGTTAGTCATACTATCGCTATGTCCCCGAGACCTTTCCACACCTCAAT
GGGGATACAATCAGGGCCCATCGCCTTGCCTCCTTTCATCCTTTTTAAAGCCTCCTTCACCTCAGACTCCTGGATGCGCC
GCACAAAACGCATGCTGG
>chr2A_1
GTGCAATGAGAAGCCTGAATGCCCCCTATGCAGAACTCCTATTACCCATTCAAGTTTAATTTGTATATATCATTCAGATT
TCTAGCAGACCATTTAGCAAGGG---ATCATATCATTCATATCCTCTAGCGTGGATCCAATCAGATTTTATAAAGCCAAC
GCCTGACATCCATTGTGGGGGATCATCTTTTATCGGGAGACATGACATGGCCTGATGGTTTCTTATCGAGATTCGTAATC
AGTAGGGCAAAGAGCTCCCACGGGCTCCATGCCTTCCCCAAGACAAAGACATATTTATACCAAAAG-AAGAAGGATGAAT
GGAAGACCAGTTGATGAAGTTGAAGAACAGTCGGGCTGTAGAGATCATCGGTAGCACCAAGGACCAATCTGAAATTAAAC
AAAAGATAAGTTTTAGTGCGGACAGATA-----------AGTTAATGTTGGACACAAGTGAATTTTGTAGGGTAGAAGA-
---ATGAATGATTAGGATCATAGACCAGTTGAGCAGTGGCACTCTTTTTTTGTTTTCTGTACGTACGCACGCCTGTTTCC
GGTCGCATCTTTTGCTGATCTGCTTG-CCTGTATCCCATATGTATTCCTGCCACATGTCTGCACTGAACATTTCGACCAG
TAAATTTACGTAAGATTAGCTGCTTCATTTTCTTAACT------------------------------GGAGTGCACCAT
CCTACGCATGGTTGTTGGAGCCATGGATCGACTG--TACATGCTGATATTGACCTCGTCAGTGCTGGATGCCAGTTTCTT
CCGCTGATAGCTTCCCGGCAGTCTGCAGCTCCCGAAGGAAAACCACCGGCGGTGTGCCTTTTTTCAGCAAAGTCATCGTC
CACCAAAACAGAGCCCATGTTGTGTCGTGCACACACCGGTGACCGGCGATGCAGCGCAGCCGCAGCCGCCGCCGTGCTAG
TCCGTTCGCCTCGTGCCCGGAGAAGAAGAATCCACCA-----CGGCGCCACCCACTATAAAATCCATCTTGGCTCACACA
AATGTGATGCCGCGCCGATCCGTCACTGTCCTCCCAGCCCCATCCCGATTTTAACCTCCTCCCCTCGCACTGACT-AAA-
CCATGATTTGCCTCAGAGCCATCCCCTCCCCTCGACTCCTCCACCTACCCCTCCCCCGCCTCGCCTCCTCCCCGCTCCGC
CGCATCAGGCCCTCCGCCGTCCTCTGCGCCGCCGCCGCCATGTCCTCCTCCCCCTCCGTCGCTGCGCCCACCGTAGCGGC
ACCGGTCGAGCACATCGTGCTCATCAAGGTCCGCCCGGAGGCCGTGGCCTCGGGGGCGGCCGCCGCGATGGTCTCCGCGC
TGCAGGCGCTCTCCACGCTCGTCCCGGGGGTCTCCTACATCCACGCGGGCCCCGTGCTCCGCCTCCGCTCCCCGGCCGCC
GAGGCGCTCGGCCCCACCCACCTCCTCCACTCCCGCTACGCCACCAAGGCCGACCTCGCCGCCTACGCGCCGCACCCGGC
CCACGTCGCCGCCGTGCAGGCGCACGTCGCCCCCAACGCGCTCGACGCCACCGCCGTCGACTGGGTCAACGCCGCGGGCG
CCCCGTCCCCCGTCGGCCCCGGCGCCGCCGTGCGCCTCACCCTCGCCAAGGTCAAGGAGGGCGTGGAGGTCGGGCAGCTC
GTGGAGAAGGTGGCCGCCGCCACCAAGGACGCCGGCGAGGCCAGCGGCTCCAAGGTCAGCTTCGGGGAGAACTTCTCCCC
CGCGCGGGCCAAGGGGTACCAGTTCGGGATGGTGGCCGTGTTCGGCAGCGTCGAGGAGCTGGACGCCGTGGAGGGCGACG
GCAAGGTGGAGGAGGCCAAGGCCGCCCTCAGGCCCATGCTCGACGAGGTCATGGTGCTGGACTTCGTCGTCGACGCTCCG
GCGGCCGCGAGCCTCTGATGGGGGGATTCAGGTTGATCT-GGAT------------------------------------
------------------------------------------------------------------------------CC
TAGAGTGCTGTCGGTTTGGGAATAATGAACTCGTTTGCTTGTGAAATCTGTATCAATCTTGAGATGAATAACAATCAGTT
GCTGTGCCTGCTGTGTGCTCCCAAGTATTTACATGCCGATGCATT---CAGTTGGTACTTCCGTTTCTAATACCAGGAAT
CAGGAACCAAGCGCTGA-----------------ATTTGTTCACAACCCTTCTCATCGCTAAACATGTGATATTAAGTAT
GCGATCGACATCTT--------TGGTATTCAAGCATATTCGTCGGCATTTGAATGTGGCGACTCATGTATTAGCC--AGT
CATGTAAAAATTCTATTAGTTATGTGCGTTTTTCATTCTACTTTGGATT-------------------------------
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>chr2D_1
GTGCAATGAGAAGCCTGAATGCCCCCTATGCAGAACTCCTATTACCCATTCAAGTTTAATTTGTATATATCATTCAGATT
TCTAGCAGACCA-TTAGCAAGGG---ATCATATCATTCATATCCTCTAGCACGGATCCAATCAGATTTTATAAAGCCAAG
GCCTGACATCCATTGTG-GGGATCATCTTTTATCGGGA-----GACATGGCCTGATGGTTTCTTATCGAGATTCGTAATC
AGTAGGCCAAAGAGCTCCCACAGGCTCCATGCCTTCATCAAGAAGAGGACATATTTATACCAAAAG-AAGAAGGATGAAG
AGAAGACC--------------------AGTCGGGCTGTAGAGATCATCGGTAGCAGCAAGGACCAATCTGAAATTAAAC
AAAAGAAAAGTTTTAGTGCGAACAGATACCCTTTGTATAAGTTCATGTTGGACACGAGTGAATTTTGTAGGGTAGAAGAA
TGAATGAATGACTAGGATCATAGACCAGTTGAGCAATGTCATACTCCGTT------------------------------
---------TTTTGCTTATCCCCTTGTCCTGTACCCCCTATGTATTCCTGCCACAT--CTGCATTGAACATTTCGACCAG
CAAATTC-CGTAAGGTTAGCTGCTTCATTTTCTTAACTTTTTTTTATGCAATCTTCATTTTTTTAACTGGAGTGCACCAT
CCTACGCATGGTTGTTGGAGCCATGGATCGACTG--TACATTCTGATATTGACCACGTCAGTGCTGGATGCCAGTTTCTT
CCGCTGATAGCTTCCCGGCGGTCTGCAGTTCCCGAAGAAAAAACACTGGCGGTGTGCCTTTTTTCAGCAAAGTCATCGTC
CACCAAAACAGAACCTATGTTGTGTCGTGCACGCACCGGTCACCGGCGATGCAGCGCAGCCGCCA------CCGTGCTAA
TCCGGTCGCCTCGTGCCCGGAGGAGAAGAATGCACCACCACCCGGCGCCACCCGCTATAAAATCCATCTTGGCTCACACA
AATGTGATGCCGCGCCGATCCGTCACTGTCCCCCCAGCCCCATCTCGATTTTAACCTCCTCCCCTCGCACTGACT-AAAA
CCATGATTTGCCTCAGAGCCATCCCCTCCCCTCGACTCCTCCACCTACCCCACATA------GCCTCCTCCCCGCTCCGC
CGCCTCAGGCCCTCCGCCGTCCTCCG---CGCCGCCGCCATGTCCTCCTCCCCATCCGTCGCCGCGCCCACCGTAGCGGC
ACCGGTCGAGCACATCGTGCTCATCAAGGTCCGCCCGGAGGCCGCGGCCTCGGGGGCCGCCGCGGCGATGGTCTCCGCGC
TGCAGGCGCTCTCCACGCTCGTCCCGGGGGTCTCCTACATCCACGCGGGCCCCGTGCTCCGCCTCCGCTCCCCGGCCGCC
GAGGCGCTCGGCCCCACCCACCTCCTCCACTCCCGCTACGCCACCAAGGCCGACCTCGCCGCCTACGCCCCGCACCCGGC
CCACGTCGCCGCCGTGCAGGCGCACGTCGCCCCCAACGCGCTCGACGCCACCGCCGTTGACTGGGTCAACGCCGCGGGCG
CCCCGTCCCCCGTCGCCCCCGGCGCCGCCGTGCGCCTCACCCTCGCCAAGGTCAAGGAGGGCGTGGAGGTCGGGCAGCTC
GTCGAGAAGGTGGCCGCGGCCACCAAGGACGCCGGCGAGGCCAGCGGCGCCAAGGTCAGCTTCGGGGAGAACTTCTCCCC
CGCGCGGGCCAAGGGGTACCAGTTCGGGATGGTGGCCGTGTTCGGCAGCGTCGAGGAGCTGGACGCCGTGGAGGGCGACG
GCAAGGTGGAGGAGGCCAAGGCCGCCCTGAGGCCCATGCTCGACGAGGTCATGGTGCTGGACTTCGTCGTCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
TAGAGTGCTGTCGATTTGGGAATAATGAACTCGTTTGCTTGTGAAATCTGTATTAATCTTGAGATGAATAATAATCAATT
GCTGTGCCTGCTGT--GCTCCCAAGTATTTACATGCCGATGCATT---CGGTTGGTACTCCCGTTTCTAATACCAGGAAT
CAGGAACCAAGCGGTGCAG-----------------TTGTTCACAACCCTTCTCATCGCTAAACATGTGATATTAAGCAT
TTGACTGACATCTTTGCTTCGGTGGTACTCAAGGATATTCGTCGGCATTTGAATGTAGCGGCTCGTGTATTAGCCCAAGT
CATGTAAAAATTCTGTTAGTT-TGTGTGTTTTTCATTCTACTCCCGATT-------------------------------
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>chr7D_1134
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----------------------------------------------------------------------CCGTCGCCGC
GCCGGTGGAGCACATGGTGCTCATCAAGCTCCGCCCGGAGGCCGTCACCTCGGGGGCCGCCGCCGCGATGGTCTCCGCGC
TGCAGGCCCTGCCCACGCTCGTCCCGGGGGTGTCCTACCTCCACGCGGGCCCCGTGCTCCGCCTCCGCTCGCCGGCCGCC
GACGCGCTGGGCCCCACCCACCTCCTCCACTCCCGCTACGCCACCAAGGCCGACCTCGCCGCCTACGCCGCCCACCCGGC
TCACGTGGCCGCCGTGCAGGCGCACATCGTCCCCAACGCGCTCGACACCACCGCCGTCGACTGGGTCAACGCCGCCGAGT
CCCCGTCACCCGTCGGGCCCTGCGCCGCCGTGCGGCTCACCCTCGCGAAGGTCAAGGAGGGGGCGGACGTCGGGCAGGTC
GTTGAGAAGGTGGCCAAGGCTAGCAAGGACGCTGGGGCTGGGGTG---GCCAGGGTCAGCTTCGGGGAGAACTTCTCGCC
GGCGCGGGCCAAGGGGTTCCAGTTCGTGATGGTGGCCGTGTTCGACAGCGTGGAGGAGCTGGAGGCCGTGGAGGCGGACG
GCAAGGTGGAGGAAGCCAAGGCCGCGCTCAGGCCCATGCTCGACGAGGTCATGGTGCTGGACTTCGTCGTCGACGATGCG
GCAGCGGCGAGCCTCTGATG------------------------------------------------------------
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>SNPs
---------------------------------------------S----------------------------------
--------------SSSS-S--SSSS------------------------------------------------------
-----------------S------------S---S---------------------------------------------
-------------------------------S-------------------------------SSSS-------------
-----------S---------------------S-------------------S-------S------------------
---------------------------------------S---------------------------------S------
-----------------------------S-----------------------------S--------------------
-------------------------------------------------S------------------------------
-----------------------------S-S---------------------------------------S--------
-----------------------------S-S--SS---S------S-S-----S---------------S---------
-----------------------------------------S--S-------------S---------------------
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--------------------------------------------------------------------------SS----
----------------------------------------------------S---------------------------
-----------------------------------S--------------------------------------------
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---------------------------------------------S----------------------------------
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-------------------------S-----------S-S----------------------------------------
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S--S------S----------------S-S--S-----------S---------S-------------------------
-S--------S---------------S-----------------SSSS-------------S------------------
--------------SSSSSSSSSSSSSSSSSSSS----------------------------------------------
-------------S---S--S-------------S-------S---------------------------S---------
-----------------S------S--S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_775
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-----------------------------------ATACGTGCTGACACTGACCC-------------------------
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>reverse_2206
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---------------------------------------------CGGCAGTTGGTACTCCAGTT---------------
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