>input_sequence_68405
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ATTCGTAACGCCCCCCTCCTTCCACTC----GCCAAGAAGCGCGAGGCAGAGAGAGAGAGAGAGCGGGCG----------
-----AGCGAGAGCAACCGCACG------GATGAAGGCGGAGAAGGCAGCGGTGGCCGCGGACGCCGTCGGGGGCGACGA
GTGGCGGTGCCGGAAGCACCCCGCGGCGAGATCCGGCGGCGGGGTGTGCCCGTACTGCCTCCGCGACCGGCTGCTGCGGC
TCTGCCCCAACTGCGCGCGGGTGCGGCCCTGCCCCTGCACGTGCGCCTCCCCATCCTCCTCCTCCTCGGCGTCCGGCGAC
GCCGTCGGCCGGGTGCACAGCCTCATCGAGCGGGAGCACCGGGTGGCGCGCTCGCGGTCCGTCGCCGCGTCCTCCTCCGC
CACGATGGCCTCCGTCGCG------------GCCTCCGGGAGGCGAAAGGCGAGGGTCTGGGGGTGGGCGCCGTTCTGGA
AGTCCTCTGCCAAGGACGGGGGCGCGGCGGAGGAGGAGGACGAGGAGGAGAGGCTGGGGCTGGCGAGGTCCAGCTCGGTC
TCCGCGACGGCCGTGGAGGCGAAGGCGGTGGCGGCCAAGGCGGCGGCGACGAAGGCGCGGTGGGGGTGGCACTTCCCGAG
CCCGATGAAGGCGTTCGGGCACCGGAGGTCGTCGGCGAGCATGCCGGAGCGGGGGTGAGATTCCTCACCACCAGTGGGGG
GATCTGTCTG-----TTGCTTTTAGGAGGTGGTTATAATATAATCAATTAACTATATGGGGGTTCTTCTTTTCCACTTTT
GTGGCTCGCGTGCTAATGTGCTATGATGTTTAAGCTAGATTAAAA-----------------------------------
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>chr6B_1_TraesCS6B01G291600
TTTCTTCTTCTTCTTCTTTTTTTGAAATTTCTTCTTCTTCTTTTTTTCTGAAAGGTTGCACAAGACCGACTTCAAGA---
---GATGCAGGTGAGGTGCACTCCTCGTACT-------AATCTCTTTTTTTAAGGGAATACAGTAGTAAGATT------T
ACTACTAATATTAACACCTTGAAGCTG----------GTAACAGAACTCAAAAAAATGCAAAATGGTCGCCTAATCG-TT
TTGACTTTGCCGGGCGCCCGAAGGCGAGACAACACGGCTCTGCGCCCCGACACAGGCGACGCCGTTCGTCAACCACACGT
GCAGAAGCGGACAGCACCTCGACGGCGATACGCTGGGCTGCGTCCGGGTCAGTCAGTCAGTCAGTAGCGCCCTGTGCGAC
GTGCGTGTAGAATA---GACGCGATACCTACGATTCGCGCTGCGAACCAGATCCGCGAGACTGCAACCGGCCT-------
-GCAGGTGCACTCCACACGGGCACCAAAGTTTCATTTAATAAATAATTAATTA-------ATCGAGAGAAATAAAGGAAC
ATCCGTCTCGGTCGCATCGTCATAAACCGACACGCGGGCCCCGCGTAACTGACCCAAGCACGGCTCATTCCCGCCCCGCA
CGTGCGCGGGCAGCCTTATCTTTCGAGCACCCTCGGGATCCTCTGCGGCCGACGACACAGTAGGTGCTCCTCGCTGTTGC
TCAGAGTCGGACTGGAGATCTGTCAAGCCAGATTTGCGCTACAAATA---------------------------------
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--------------------------------AAACAAATCGGAAGCTGTTTCTTTGCTCAGATGTACGCGC--TCTACA
CGTCGTGAATGATGCATTCTCATACGGTGGTTCTAGGCTACAGC-AGTTGAGGTGCAACCGCACAAGATCCCGCGGCAAC
CACTGCCCAGCTGTACCCGATGGCACCCTCGTGAATAACCGCAAGCTACGTGCCTTCTCTCCGTGCCCGAAAAACCACAC
GTCGTTAAGCCCCGCCGG----TGCCTCCTTTATTACACACTCCGGCGCGCCCCTTCCCGCAGCGACGCTGTGAGTTCGT
ATTCGTAACGCCCCCCTCCTTCCACTC----GCCAAGAAGCGCGAGGCAGAGAGAGAGAGAGAGCGGGCG----------
-----AGCGAGAGCAACCGCACG------GATGAAGGCGGAGAAGGCAGCGGTGGCCGCGGACGCCGTCGGGGGCGACGA
GTGGCGGTGCCGGAAGCACCCCGCGGCGAGATCCGGCGGCGGGGTGTGCCCGTACTGCCTCCGCGACCGGCTGCTGCGGC
TCTGCCCCAACTGCGCGCGGGTGCGGCCCTGCCCCTGCACGTGCGCCTCCCCATCCTCCTCCTCCTCGGCGTCCGGCGAC
GCCGTCGGCCGGGTGCACAGCCTCATCGAGCGGGAGCACCGGGTGGCGCGCTCGCGGTCCGTCGCCGCGTCCTCCTCCGC
CACGATGGCCTCCGTCGCG------------GCCTCCGGGAGGCGAAAGGCGAGGGTCTGGGGGTGGGCGCCGTTCTGGA
AGTCCTCTGCCAAGGACGGGGGCGCGGCGGAGGAGGAGGACGAGGAGGAGAGGCTGGGGCTGGCGAGGTCCAGCTCGGTC
TCCGCGACGGCCGTGGAGGCGAAGGCGGTGGCGGCCAAGGCGGCGGCGACGAAGGCGCGGTGGGGGTGGCACTTCCCGAG
CCCGATGAAGGCGTTCGGGCACCGGAGGTCGTCGGCGAGCATGCCGGAGCGGGGGTGAGATTCCTCACCACCAGTGGGGG
GATCTGTCTG-----TTGCTTTTAGGAGGTGGTTATAATATAATCAATTAACTATATGGGGGTTCTTCTTTTCCACTTTT
GTGGCTCGCGTGCTAATGTGCTATGATGTTTAAGCTAGATTAAAACT-GAAAGCCTGTGATTTGGGCGCAATGCGCTCAA
TTACCCTTTGGGCGGCGTCATTTCCTCCCTGCTTTTGTTGTCCCTTGGTGTTGTGTCTGTACACTTACTGCTCCACCGTG
TAGTACCATCAAAATTGGACATTTTAAGCTCCC--ATTTGATCTGCGCTACTTCCTTGAA--------------------
----------------------------------TTTTTGGTATTCAGGATAAAAATTAGAAATCCCAGGCATGTGAGAC
AGTTAAACACGATGGTAC---CAGCACAACATCGAACAGCAGTTA---AGCACGACGGCACCACTATCATTAGCGTGTAT
AGGAAAGGTGAAAAGCACCAGTGCGGCGGT--GTTCATTGCTCCATTTATCTAGAGCTTTTGATGTTATGTATGGAGTGG
GGGTACTAGGT------GAGTAGTACGTGACGGGATAGCAGCTTGTGTGTCGTGCACACTGGTCTAGTCGTGCTGCTTTG
GGTGGAGCAGGTTCAGGACTAGGAATAGG-CGGCTCGAGCGCAGTGTCCTCGTCTCGCCGACATGTGGGCCCGGGCAGCA
CACGCTCGCCTACGTTGCAAGTGGTGAAGGAGAGGACCCTTCGCTC--TACTACCTGGTCTAGTGCACTGGCCCTGTCGC
CCGCCGCTGGCTGCACCCGCTGCCTCGACGGCAAACGCAGCGCATTGAGCTGTGAGC-----------------------
------------TGGTTCACCGCGGGCTGGTGTTTCAACTCCCGTCGAAATCATTTGGAGCTCACTGTTTGCACCGATGA
GGTAATCATTGCTCGACAGCTCAAGCTTTGTTCGTGGAATCTTTCGGAGAAGATTGCACTTCTTCCAGAAACGAAAATGT
CTCGCTTCGTCACCACTAC-------------CAGTATTTGAGCTGTTCACCGACCAAGAATAAATCATCATACAGGGAA
ACTGCTGTAGAGATAAAATGTAGTAGGATTAAGTGAGTCAATATCTGAGCTGCTCACAAATCTTTTGCCGAGCAAAAAAG
AAAAAAAAAACTGTTGAGCAATCAGTAGGTTGCGAGTGAGAGTGGCA
>chr6A_8
-------TTCTTCTTCTTTTTTTGAAATGTTGTTTATTTCTTCTTTTA----GTATTGCACAAGACCGACTAGTAGTACA
AGTGATGCA---GAAGTGCACTCCTCGTACTTACTACTAATCTCTTTTTTTAGAGAATAC----AGTAAGAGT------T
ACTACTAATCTTAACACCTCGAAGGTG----------GTAATAAATCTC-AAAAAATGCAGAATGGTCGCCTAAATCCTT
TTGACTTTGCCGGGCGCCCGAAGGCGAGACAACACGGCTCTGCGCCCCGACACAGGCGACGCCGTTCGTCAACCACACGT
GCAGAAGCGGACAGCACCTCGACGGCGATACGCTGCGCTGCCCCGCTCC------------------------------C
GTGCGTGTAGAATACTAGACGCGATAACTACGATCCGCGCAACGAACCAGATCTGCGAGATTGCAACCGGTGACTCTGCA
GGCAGGTGCACTCCACACGGGCACCAAAGTTCCATTTAATAATTAATTAATTA-------ATCGAGAGAAATAAAGGAAC
AGCCGTCTCGGTCGCATCGTCGTAAACCGACAGGCGGGCCCATCGTAACTGACCCCAGCACGGCTCATTCCCGCCCCGCA
CGTGCGCGGGCAGCCTTATCTTTCGAGCCCGAGCGGGATCCTCTGCGGCCGGCGACACCGTAGGTGCTCCTCGCCGTTGC
TCAGAATCAGAGTGGAGATTTGTGCTAGTACTCCTCCGGTCATTTTTATTCTGCATATTAGAGATTTGATCATATTTATA
TGAAAAATTATCAACATCTGCCATGCTAAAGTTATACAATACTATGAAACTTTAAGTCATGACACATCTTTTTATATTGA
TTTCAGATTGTGAATATTGATACTTTTTCTTATAAAATTGGTCAAACTTTACGAGACTTGACTTCAGTCAAATCTTATAT
GCGAACTAAAAAGGCCCGGAGGAAGGGAGTACAAACAAATCGGAAGCTGATTCTTTGCTCAGTCAGATGTGTGATCTACA
CGTCCTGAATGATGCGTTGTCATACGGTTCTAGTAGACTATAGCAAGTTGAGGTGCAACCGCAGAAGATCCCGCGGCAAC
CGCTGCCCAGCTGTACCCGATGGCACCTTCGTGAATAACCGCGAGCTACGTGCCTTCTCTCCGTGCCCGGAAAACCACAC
GCCGTTAAGCCCCGCCGG----TGCCTCCTTTATTACACACTCCGG-----------------CGACGCTGTGAGTTCGT
ATCCGTAACGCCCCCCTCCTTCCACTCTCTTGCCAAGAAGCGCGAGGCAGAGAGAGAGAGAGAGAGAGAGAGCGAGCGAG
TCATCAGCGAGAGCAACCGCACGGAGGGAGATGAAGGCGGAGAAGGCAGCGGTGGCCGCGGCCGCCGTCGGGGGCGACGA
GTGGCGGTGCCGGAAGCACCCCGCGGCGAGATCCGGCGGCGGGGTGTGCCCGTACTGCCTCCGCGACCGGCTGCTGCGGC
TCTGCCCCAACTGCGCGCGCGTGCGGCCCTGCCCCTGCACCTGCGCCTCCCCATCCTCCTCCTCCTCGGCGTCCGGCGAC
GCCGTCGGCCGGGTGCACAGCCTCATCGAGCGGGAGCACCGGGTGGCGCGCTCGCGCTCCGTCGCCGCGTCCTCCTCCGC
CGCGATGGCCTCCGTCGCCGCGGCCGCCTCCGCCTCCGGGAGGCGAAAGGCGAGGGTCTGGGGGTGGGCGCCGTTCTGGA
GGTCCTCTGCCAAGGACGGGAGCGCGGCGGAGGAGGAGGACGAGGAGGAGAGGCTGGGGCTGGCGAGGTCCAGCTCGGTC
TCGGCGACGGCCGTGGAGGCCAAGGCGGTGGCGGCCAAGGCGGCGGCGACCAAGGCGCGGTGGGGGTGGCACTTCCCGAG
CCCCATGAAGGCGTTCCGGCACCGGAGGTCGTCGGCGAGCATGCCGGAGCGGGGGTGAGATTCCTCGCCACCAGTGGGGG
-ATCTGTCTCTTGCTTTCCTTTTAGGAAGTGGTTATAATATAATCAATTAACTATATGGGGGTTCTTCTTTTCCACTTTT
GTGGCTCGCGTGCTAATGTGATACGATGTTTAAGCTAGATTAAAAACCGAAAGCCTGTGATCTGGGCGCAATGCGCTCAA
TTACCCTCTGGGCGGCGTCATTTCCTCCTTGCTTTTGTTGTCCCTCGGTGTCGTGTCTGTACACTTGCTGCTCCACCGTG
TAGTACCATC-TAATTGGACATTTTAAGCTCCCCGATTTGATCTGCGCTACCTTCTTTCCAGCACCATTTGTGAATCTGC
AATTTCGTTGCATTGCATCCTTGATTGTCTTTTTTTTTCGGTATTCAGGATAAAAATTAGAAAACCCAGGCCTGTGAGAC
AGTTAAACACGATGGTACTACCAGCACGACATCGATCAGCAGTTAAGCAGCACGACGGCACCACTATCATTAGCGTCGAT
C-GAAAGGTGAAAAGCACCGGTGCGGCGGC--GTTCATTGCTCCATTTATCTAGAGCTTTTCATGTTGTGTA--------
-----CTAGGC------GATTAGTACGTGACGGGATAGCAGCTTGTGTGTCGTACACACTGGTCTAGTCGTGCTGCTTTG
GGTGGAGCAGGTTCAGGACTAGGAATAGGGCGGCTCGAGCGCACTGTCCTCGTCTCGCCGACATGTGGGCCCGTGCAGCA
CACGCTCGCCTACGTTGCAAGTGGTGAAGGAGAGGGCCCTTCGCTCAGTACTGCCTGGTCTAGTGCACTGGCCCTGTCGC
CCGCCCG---------CCGCTGCCTCGACGGCAAACGCAGCGCATTGAGCAGTGAGCTCT--------CTTCTTCACGTT
GTGGTCTAGTACAGGTTCACCGCGGGCTGTTGTTTCAACTCCCGTCGAAATGATTTCGAGCTCACTATTTGCGCCGATTA
GGTAATCATTGCCCAGCAGTTCAAGCTTTGTTCGTGGAATCTTTCGGAGA------------------------------
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>chr6D_9
--------TCTTTTTTTTTTTTTGAAAGGTTGTTTATTTCTTCTTTTAGTACGTATTGCACAAGACCGACTAC---TACA
AGTGATGCAGGTGAAGTGCACTCCTCGTACT-------AATCTCTTTTTCTAGGGAATAC----AGTAGTAAGAGTTACT
AGTACTAATATTAACACCTCGAAGGTGGTAATAACTAGTAATAAATCTC-AAAAAATGCAAAATGGTGGCCTAATCG-TT
TTGACTTTGCCGGGCGCCCGAAGGCGAGACAACACGGCTCTGCGCCCCGACGCAGGCGATGCCGTTCGTCAACCACACGT
GCAGAAGCGGACAGCACCTCGACGGCGGTACGCTGGGCTGCGGCCGT---AGTCAGTCAGTCAGTAGCGCCCTGTGCGAC
GTGCGTGTAGAATA---GACGCGATACCTACGATTCGCGCTACGAACCAGATCTGCGAGATTGCAACCGCTCT-------
-GCAGGTGCACTCCACACGGGCACCAAAGTTTCATTCAATAAATAATTAAAGTTAAACTCATTGAGAGAAATAAAGGAAC
AGCCGTCTCGGTCGCATCGTCATAAACCGACACGCGGGCCCCGCGTAACTGACCCAAGCACGGCTCATTCCCGCCCCGCA
CGTGCGCGGGCAGCCTTATCTTTCGAGCACCCTCGGGATCCTCTGCGGCCGACGACACAGCAGGTGCTCCTCGCCGTTGC
TCAGAATCGGGCTGGAGATTTTTCTAGCCAGATTTGTGCTACAAACA---------------------------------
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--------------------------------AAACAAATCAGAAGCTGTTTCTTTGCTCAGTTGTATGCTCC--CTACA
CGTCCTGAATGATGCATTCTCATGCGGTGGTTCTAGGCTACAGC-AGTTGAGGTGCAACCGCACAAGATCCCGCAGCAAC
TACTGCCCAGCTGTACCCAATGGCACCCTCGTGAATAACCGCAAGCTACGTGCCTTGTCTCCGTGCCCGAAAAACCACAC
GCCGTTAAGCCCCGCCGGGAATTGCCTCCTTTATTACACACTCCGGCGCGCCCCTTCCCGCAGCGACGCTGTGAGTTCGT
ATCCGTAACGCCCCCCTCCTTCCACTCGCTTGCCAAGAAGCGCGAGGCAGAGAGAGAGAG--------------------
-------CGAGAGCAACCGCACG----GAGATGAAGGCGGAGAAGGCAGCGGTGGCCGCGGCCGCCGGC---GGCGACGA
GTGGCGGTGCCGGAAGCACCCCGCGGCGAGATCCGGCGGCGGGGTGTGCCCGTACTGCCTCCGCGACCGGCTGCTGCGGC
TCTGCCCCAACTGCGCTCGCGTGCGGCCCTGCCCCTGCACCTGCGCCTCCCCGTCCTCCTCCTCCTCGGCGTCCGGCGAC
GCCGTCGGCCGGGTGCACAGCCTCATCGAGCGGGAGCACCGGGTGGCGCGCTCGCGCTCCGTCGCCGCGTCATCCTCCGC
CGCGATGGCCTCCGTTGCCGC------------CTCCGGGAGGCGAAAGGCGAGGGTCTGGGGGTGGGCGCCGTTCTGGA
AGTCCTCTGCCAAGGACGGGGGCGCGGCGGAGGAGGACGAGGAGGAGGAGAGGCTGGGGCTGGCGAGGTCCAGCTCGGTC
TCCGCGACGGCCGTGGAGGCGAAGGCGGTGGCGGCCAAGGCGGCGGCGACCAAGGCGCGGTGGGGGTGGCACTTCCCGAG
CCCCATGAAGGCGTTCCGGCACCGGAGGTCGTCGGCGAGCATGCCGGAGCGGGGGTGAGATTCCTCGCCACCAGTGGGGA
GATCTGTCTG-----TTGCTTTTAGGAGGTGGCTATAGTATAATCAATTAACTATATGGGGGTTCTTCTTTTCCACTTTT
GTGGCTCGCGTGCTAATGTGCTATGATGTTTAAGCTAGATTAAAACT-GAAAGCCTGTGATTTGGGCGCAACGCGCTCAA
TTACCCTCTGGGCGGCGTCATTTCCTCCCTGCTTCTGTTGTCCCTTGGTGTCGTGTCTGTACACTTACTACTCCACCGTG
TAGTACCATC-AAATTGGACATTTTAAGCTCCCCGATTTGATCTGCGCTACTTTCTTTCCAGCACCATCTGTGAATCTGC
AATCTCGTTGCCTTGCATCCTTGATTGT-TTTTTTTTTTGGTATTCAGGATAAAAATTAGAAATCCTAGGCATGTGAGAC
AGTTAAAT------------------CGACATCGATCAGCAGTTA---AGCACGACGGCACCACTATCATTAGCGTGTCT
AGGAAAGGTGAAAAGCACCAGTGCGGCGGTGTGTTCATTGCTCAATTTATCTAGAGCTTTTGATGTCATGTATGGAGTGG
GGGTACTAGGTCTAGGTGAGTAGTACGTGACGGGATAGCAGCTTGTGTGTCGTGCACACTGGTCTCGTCGTGCTGCTTTG
GGTGGAGCAGGTTCAGGACTAGGAATA-GGCGGCTCGAGCGCAGTGTCCTCGTCTCGCCGACATGTGGGCCCGTGCAGCA
CACGCTCGCCTACGTTGCAAGTGGTGAAGGAGAGGACCCTTCGCTC--TACTACCTGGTCTAGTGCGCTGGCCCTGTCGC
CCGCCGCTGGCTGCACCCGCTGCCTCGACGGCAAACGCAGCGCATTGAGCAGTGAGCTCTCCCCTACCCTTCTTCACGTT
GTGGTCTAGTACTGGTTCACCGCGGGCTGATGTTTCAACTCCCGTCGAAATCATTTGGAGCTCACTGTTTGCACCGATGA
GGTAATCATTGCCCAACAGCTCAAGCTTTGTTCGTGGAATCTTTCGGAGAAGATTGCCCTC--TCCCGAAAGGAAAATGT
CTCGCCTCGTCACTACTACTAGTAGAGTACTGCAGTATTTGAGCTGTTCACCGACCAAGAATAAATCATCATACAGGGAA
ACTGCTGTAGAGATAAAATGTAGTAGGGTTAAGTGAGTCAATATCTGAGCTGCTCACCAATCTTTTGCCGAGCAAAAAAG
AAAGAAC-AACTGTTGAGCTATCAGTAGGTTGCGAGTGAGAGTGGCA
>SNPs
SSSSSSS---------------------S-SS-S-SS-----S----SSS-SSSS----------------S-S--S---
--------------S-------------------------------------S--S-SSSSSSS-------S--------
-------------------S----S----------------S-S-S---S------------------------------
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------------------------------------------S---SSSS------------------------------
-----------------------------------------S-----------S------S---------S---------
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-S------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-----S-------------S----S-------------------------------------------------------
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--------------------------------------------------------------S----S------------
----S---------------------------------------------------------------------------
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-S------------------------------------------------------------------------------
--S-------------------------------------------------------------S-S-S-----------
-------------------------------------------------------------S------------------
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-------------------S--------------------S---------------------------------------
--------------------------------------------------------S-----------------------
-S----------------S-------------------------------------------------------------
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--------------------------------------------------S-----------------------------
---S------------S-------------------------------------------------S-------------
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-------S-------------------------------------------S----------------------------
----------S------------------------------------------S---SSS--------------------
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---------------------------S-------S--------------------------------------------
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-------------------------------------------------------------------------S------
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--------------------------------------------------S-----------------------------
-----------------------------S--------------------------------------------------
------------S-S------------------------------------------S--SSS---S----S--------
-----S-------S------------------------------------------------------------------
---------------------------S-----------------------------S----------------------
---S--SS-----------S---------------------------
>forward_72
----------------------------------------------------AGGTTGCACAAGACCGACTT--------
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>reverse_2436
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-----------------------------------ACAGCAGTTAAGCACGACGG-------------------------
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