>input_sequence_68404
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---------------------------------------------------------------------------ATATA
TATGCACATACAGCACGTCGCGTTTGTGGTACCAGGCCGTGAGATCGTGGGAAGGAAGCCAACACCGCCAGGCGCGTATC
GAT------------GTCGTCGCCGGCGCCGCCTCTGCTCCCCATCGCGCCGCTGCACGGAGAGAGCGGCTACCTCCGCT
GGAGGGAGTCGGTTTTGCTCCGCCTCCACACGCTCGACGTGGCGCACGTGCTGACCGAGGAGCGCCCCGCAGACGAGAGG
TCGGCCGCCGGCAAGCAGTGGGCGCGTGCGGACGCGATGTGCCGCGGCCACATCCTGGCCACGCTCTCGGACCGCCTCCT
CCAGGTCTACGCGCCCCACGCCACCGCGGCGGCCGTGTGGCGCGCCGTGGCGCGCACCTACGACCTGGACATAGCGGTGG
ATGATCCGACATACAGCGTGCCCTATGAGAAGGCCGTCAAGTTCCGGTACGCGGAGGGCGAGCCCGTGACGGAGCAGCTC
GCGCTCCTCGAGGGCTTGGCCACCAACGCAGAACTAAATGACACTTGCCTGTGTCTCATCGTGAAGGATCAGTTCCCGAC
GTTGAGAATGGCGGTCATCAAGCGCAAATACCGTGTGGGCGTGGACAAGCTCTGGGAGATCGCCCGGCGGAAGGAACTGG
CTGCCAGGGTAGAGTATGTTCGCAATGGCAGGTACGCTCCGCCGACGACATACGCGCAAGACAGCTCCTCCTCCTCAGAT
GATGATGAGCGGTGCCCGATACGGCGACGGAGGACGTGATTCAGATCATCAGATGCATGCGGCGAGCCTGTTGGAAGGAA
T--CTACTCGTA--------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G430900
ATGCCTAGGCGCCCGAGGGAGGGGAAACAGAGCACAAATGATACAGGATCAGGGACAATGAAGGAACCCCATGCTAATAT
TTGGCCATTAAAAAGATCATAGTGATGGTCTGAAGACAGCAACGTAGTCACCGGGGGAAGCTCTATGATGAGGCGTGTGA
GCGGATTTAGTAGTTGAATGTGGTTGTACTCATCGAGCAGGATGAGGAGGCCCTCGGGGGTCGACGTGAGTGTCTTGTGC
CAGAGAAGCACCAGGAGATCCACTTCTATGGTCTGGCCAGTGGAGAGGTTGAGAAACCGACGGCGGTGGGGAATGGCAAG
TTTCTCCCGGAGCATGATCCAGTGCCGAGGATGAAGACGGCGGTCGAGCTCGTCGACCCCTAGCGGATCGATGCCACACT
GCCGCCAAGTGCGGCAGACAGCACGGAGGCGGATGTAATCGGCCACGTCGTGGGCAAGGACGTAATCAGCGATCAGTCCA
ATCGGCCCCATCGGAAAGACTCGCCCAGTCCCTCCTGTGAAAACACGGATCAGAAGACCGAAATCAGATAAATTTCATTG
GAACCACGTGAACAAACGATGCACGTACCATTCAGCCGTAGCCACGGAGCGGCGGCCATTGTGCACCGTGCGTGGGCGCT
TTGTTCCCCAATCACAAGAAGGCTTCGTCTTCGTCGTCGTACGGGCGAGGGTGATGGTTGGGGCGGAGGAGGAGAATGAG
CAGCCCTGGCGGTGCGACGGGGTTCTGGACCGGCGCCTGGCGCGCCCGTGAGACTGTTCCTCCGCCATCCGAGTGCGCAC
GCCTGTAAACCGGGGGTAGTGTAAGTTCCCTGTGTGTTCTGCGATCTGTGCGTTTATATGCCCGATATATGAATCTCAAA
AATAAGAAGGCCGAGTAGGGTTGTGGACGGATACGTCTCCGTATC-CAGCACCAGGCCAAGTAGGT--------------
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----------------TTAGAGTCCGTGCCGTTTTGGTGTTGCACCCACCCACGTTCGTGTGTGCATGTGT----ATATA
TATGCACATACAGCACGTCGCGTTTGTGGTACCAGGCCGTGAGATCGTGGGAAGGAAGCCAACACCGCCAGGCGCGTATC
GAT------------GTCGTCGCCGGCGCCGCCTCTGCTCCCCATCGCGCCGCTGCACGGAGAGAGCGGCTACCTCCGCT
GGAGGGAGTCGGTTTTGCTCCGCCTCCACACGCTCGACGTGGCGCACGTGCTGACCGAGGAGCGCCCCGCAGACGAGAGG
TCGGCCGCCGGCAAGCAGTGGGCGCGTGCGGACGCGATGTGCCGCGGCCACATCCTGGCCACGCTCTCGGACCGCCTCCT
CCAGGTCTACGCGCCCCACGCCACCGCGGCGGCCGTGTGGCGCGCCGTGGCGCGCACCTACGACCTGGACATAGCGGTGG
ATGATCCGACATACAGCGTGCCCTATGAGAAGGCCGTCAAGTTCCGGTACGCGGAGGGCGAGCCCGTGACGGAGCAGCTC
GCGCTCCTCGAGGGCTTGGCCACCAACGCAGAACTAAATGACACTTGCCTGTGTCTCATCGTGAAGGATCAGTTCCCGAC
GTTGAGAATGGCGGTCATCAAGCGCAAATACCGTGTGGGCGTGGACAAGCTCTGGGAGATCGCCCGGCGGAAGGAACTGG
CTGCCAGGGTAGAGTATGTTCGCAATGGCAGGTACGCTCCGCCGACGACATACGCGCAAGACAGCTCCTCCTCCTCAGAT
GATGATGAGCGGTGCCCGATACGGCGACGGAGGACGTGATTCAGATCATCAGATGCATGCGGCGAGCCTGTTGGAAGGAA
T--CTACTCGTAATAAGCTTGTGTTAGATGAGTCTGGCGGAAACATTGCTTTTCGATCGTGCATGTGTCGGCTTGCATGC
CAAGTCAGTCCGTGCTTGAATTCTGCTTGGGTGCTGACAACGTAGCCGAGCCGAGTAACGGAGTAAGGTTTAGGACCGAG
TTTGAGTAGTCAAGACGTTTGATCGCGTCC-------------------------AAAGAAATAATGAAAACAACGTAGT
ACTTGAGATGCATGCCTCTACGTTGGTTCGATTGTTTGGCATGGGTTCACGTGCGTTGTTTTTCTGCAAAGTTTT-AGAG
CATCTCCAACAGAGGCGTAAAAATATCGAGCACTAAAATAGTTTTACAGCGCCACTGTAGCACTTTTAGCGCGATGCGGT
CAACAATGA-TTTTCCAGATCCCAAAAACACGCGCCAAA-AAAACATGCAGTGCAAATTATGAAGCGTGCGCGGTCCGGC
CACCAACATTTGCAGCGTGCGATATCGCTTTTTAGCGCGGGCGTTATATTTTTTTACGCGCGCACTATTTTGCAACATCT
GCTGGAGCGTCTCCGGCGCTCAAAAAGGACGACTTTTAGCACGCGAAGCAGTTTTTGGGCGCCTGTTGGAGATGCTTTTA
ATGGGTCATCAACAATGATGTCGGAGTCGCCCTCTAGGAGAGAAGTGATGACGACGATGTTGTGGGCAACCTCAGGGTCA
GGGGTGTATGTGGGTCTTGTTGATGGCCAGGTCGGCCAGTATGCCCTATCTCATGAGCGTGTTCTAACAGTATTCACCCG
TATATCTCGTTCCAAAAACATACGGAGTGCACTTCACATCCACATTAGTGTGCGGCTGTGATCGGAAAATATGGGCTCTC
TCGTATCGTGTTCACCATTTCCACGTCTTATGCTACTTGTTTCCACTAGTGCAAATTGAGTCACACACGGTTAAAAATCC
TTATCGCATATGGAGATGGGAAGTCGTCTTGCGATGATGTGTGATCGTCACACGTCTTCGCTTAAGAAATGTGTGTAATT
>chr5A_1
ATGCTTAGGTGGCCGAGGGAGGGGAAACAGAGCACAAATGAGATAGGATCAGTGACAATGAAGGAACCCCACGCTAATAA
TTGACCATTAAAAAGATCATAGTGATGGTCTGAAGGCAGCAACGTAGTCACCGGTGGAAGCTCTATAATGTGGCGTGTGA
GCGGATTTAGTAGTCGAATGTGGTTGTACTCATCGAGCAGGATGAGGAGGCCCTCGGGGGTGGACGTGAGTGTCTTGTGC
CAGAGAAGCACCAGGAGATCCACTTCTATGGTCTCGCCAGTGGAGAGGCTGAGAAACCGACGGCGGTGGGGAATGGCAAG
TTTCTCCCGGAGCATGATCCAGTGCCGAGGATGAAGACGGCGGTCGAGCTCGTCGAGCCCTAGCGGATCGATGCAACACC
GCCGCCAAGCACGGCATACAGCACGGAGGCGGATGTAATCGGCCACGTCGTGGGCAAGGATGTAATCGGCGATCACGCCA
ATCGG-TCCATCAGAAAGATTCGCCCAGTCCCTCCTGTGAAAACACGAATCAGAAGACCAAAATCAAATAAATTTCATTG
AAGCACGT--------------ACGTACCATTCAGTCGTAGCCACGGAGCGGCGGCCATTGAGCACCGTGCGTGGGCGCT
TTGTTCCCCAATCACAAGAAGGCTTCGTCTTCATCGTCGTACAGGCAGGGGTGATGGTTGGGGCGGAGGAGGAGAATGAG
CAGCCCTGGAGGTGCGACGGGGTTCTGGACCGGCGCCTGGCGCGCCCGTGAGACTGTTTGTCCGCCATCCGAGTGCGCAC
GCCTGTAAGCCGGGGGTAGTGTAAGCTCCCTCTGTGGTCCGCGATCTGTGCGTTTATATGCCCGATATAAGAATCTCAAA
AATAAGAAGGCCGAGTAGGGTTGTGGACGGATACGTCTCGGTATCACGGCACTAGGCTGAGTGGGTTAGAGCGAAAATCC
TACACTTACGGAAAGAGTGCTACAGGCTGGTTTCACGGGGAGATGTGTCCTCCTCTCCACCATGAATTCACCCCTCCTTG
ATTTTAGCTGGCCCCATCCTTTGATTTTAACTGGGTCATGTCAGTCCGTAACTTCCCTTCTGTGAGAAATCGCATGTAGA
TGTAGCAAAGCTCAGGTTAGAGTCCGTGTCGTTTTATTGTTGCACCCACCCACGTCCGTGTGTGTATATATTACCATATA
TTACCACATACAGCACCTCGCGGTCCTCGTACCAGGCCGTGAGATAGTGGCAAGAAAAACAACATTGCCAGGCGCGCGTC
GAT------------GTCGTCGCCGGCGCCGCCTCTGCTCCCCATCGCGCCGCTGGACGGAGAGAGCGGCTACCTCCGCT
GAAGGGAGTCTGTGCTGCTCCGCCTCCAGACCCTCGACGTGGCGCACGTGCTGACCGAGGAGCGCCCCGCCGACGAGAAT
ACGGCCGCCGGCAAGCGATGGGCGCGCGCGGACGCCATGTGCCGCGGCCACATCCTGGCCACGCTCTCGGACCGCCTCCT
CCAGGTCTACGCGCCCCACGCCACCGCGGCGGCCGTGTGGCGCGCCGTGGCGCGCACCTACGACCTGGACATGTCGGTGG
ATGATCCCTTACTCAACGTGCCCCGTGAGAAGGCCGGGACGTTCCGGTACGCGGAGGGCGAGCCCGTAACGGAGCAGCTC
GCGCTCCTGGAGAGCTTGGCCACCAATGCAAAGCTCGGTGACTTCAGCATAACTTTAGTCGTGATGTCACAGTTCCCGAC
GTTGAGACAGGAGGTCATCAAGCGGGGTCGCT---TGGGCATGGACGAGATCTGGGAGATCGCTCGGCGGCAGGAGGTGG
CTGCCAGGGTAG--------------------------------------------------------------------
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>chr5D_31
------------------------------AGCACGAATGATATAGAACCAGTGTCAATGAAGGAACCCCACACTAATAA
TTGGCCCTCCAAAAGGATACCGTGGCCGTTCGACTTGAGCAATGTGGTCACCGGTGGGAACTCTATGAGGTGGTGCGTGA
GCGGGTTTAGTAGCCGAATGTAGATGCGCTCGTGGAGTAGCATGAGGAGACCCTCAGGAGTCGACGTGAGCATCATGTGG
GCGTTGAGCTCCAGGAGATCCACTTTTATGGTCTCGCCGGTGGAGAGGTTAAGGAGGCGACGATAATGCGAAAGGGCGAG
TTGCTCCCGAAGCATGATCCAGCGACGGGGATGAAGGCGGCGGTCCAGGCCATCGAGCTCACGCGGATCGGTAGAGCACC
GCCGCCATGCACGGCACACTGCACGAAAGCGGATTTAGTCTGCTACGTCGTGGTCGAGGACGTGATCGGCGATCACCCCG
GCCGG-CCCATCGGAAAGACTCGCCCAGTCCCTCCTGTGGCAACACGGGTCAGAAGACC---------------------
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>chr5A_1042
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------------------------------------CCGTGAGATCGTGGGAAGAAACCCAACACAGCCAGGCGCGTAGG
GTATCCATCATCCACGTCGTCGCCGGCGCAGCCTTTGCTCCCCATCGCGCCGCTGAACGGAGAGAGCGGCTACCTCCGCT
GGAAGGAGTCGGTGCTGCTCCGCCTCCACACCCTCGGCATGGCGCACGCGCTGACCGAGGAGCGCCCCACCGACGAGAAG
ACGGCCGCCGGCAAGCAGTGGGCGCGCGCTGACGCGATGTGTCGCGGCCACATCCTCGCCACGCTCTCGGACCGCCTCCT
TCCGGTCTACGCTCCCCACGCCACCGCGGCGGCCGTGTGGCGC----------GCACCTACGACCTGGACCTGGCGGCGG
ACCTTTCGTTTTACAACGTGCCCCGTGAGAAGGCCGGGACGTTCCGGTACGCGGAGGGCGAGCCCGTCACGGAACAGCTC
GCGCTCCTGGAGGGCTTGGCCACCAACGCGAAACTCGAGGACACTAGCCTGTGTTTCATCGTGAAAAATCAGTTCCCGAC
ATTGAGAATGGCGGTCATCAAGCGCGACTACCGTGTGGGCGTGGACAAGCTCTGGGAGATTGCCCGGCGGAAGGAACTGG
CTGCCAGGGTAGAGTATGTTCGCCATGG----------CCGCAGACGACAGACGTGCAAGACAGCTCCTCCTCA------
GATGATGACCGGTGCCCGATACGGCGACGGAGGACGTGAT--------TCAGATGCATGCGGCGAGCCTGTCGGGAGCAA
TATCTACTCGTAATAAGCTTGTGTTAGATGAGTCTGGCGGAAACATTTCG-------------TGTGTCGGCTTGCATGC
CAAGTCAGTCCGTGTTTGAATTCTGCTTGGGTGCTGACAACGTAGCCGAGCCGAGTCACGGAGTAAGGTTTAGGAGCGAG
TTTGAGTGGTCAAGACGTTTGATCGCGTCCTGAGTTGTGTGATCCGATTGCGAGGAAAGAAATAATGAAAACAACGTA--
-CTTGAGATGCATGCCTCTACGTTGGTTCGATTGTTTGGCATAGGTTAA-GTGCGTTGTTTTTCTGCAAAGTTTTTAGAG
CATCTCCAACAGAGGCGCAAAAGTATCGAGCGCAAAAATAGTTTTACAGCGCCACTGTAGCATTTTTAGCACGCCGCGGC
CAACATCAATTTTTCACGTGCCCAAAAACGCGCGCCTAAAAAAACACGCAGTGCAAATTATGAAGCGCGCGCGATCCGGC
GCCCAACATTTGCAGCGTGCGATATCGCTTTTTAGCGCGGACGTGAT-TTTTTTTGTGCAGGCACTATTTTGCAACATCT
GTTGGAGCGTCTTCGGCGCTCAAAAAGGACGATTTTTAGCGTACGAAGTAGTTTTTGGGCGCCTATTGGAGATGCTCTTA
ATGGATCGTCGATAATGAAGTCGGAGTCGCCCTCTAGGAGAGAAGTGATGACGATGATGTTGTGGGCAACC------TCA
GGGGTGTATGTGGGTCTTGTTGATGGCCAGGTCGACCAGTATGCCCTATCTCATGAGCGTGTTGTAACAGTATTCACCCG
TATATCTCGTTCCAAAAACATACAGAGTGCACTTCACATCCACATTAGTGTGCAGCCGTGACCGAAAAATATGGGCTCTC
TCGTATCGTGTTCACCATTTTCACGTCCTATGCTACTTGTTTCCACTAGTGCAAATTGAGTCACACACGATTAAAAATCC
TTATCGCATATGGAGATGGGAAGTCGTCTTGCGATGATGTGTGATCATCACACGTCTTTGCTTAAGAAATGTGTGTAATT
>chr5A_1102
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----------------------------CCGCCTCTGCTCCCCATCATTCAGTTGGACGGAGAGAGCGGTTACCTCCGCT
GGAAGGAGTCAGTGCTGCTCCGCCTCCACACTATTGGTGTGGCCGACGTCCTGACCGAGGAGCGCCCTCCCGACGAGAAG
ACGGCTGCCGGCAAGCAGTGGGCGCACATGGATGCATTGTGCCGTGGCCACATCCTCGCCACGCTCTCCGACCGCCTCCT
TCCGGTCTACGCTCCCCACGCCACTGCAGCTGCCGTGTGGCGCGCCGTGGCGCGCACCTACGATCTGGACCTAACGGTGG
ATGTTCCGCTTCGAAGCGTGCCCTATGTGAAGGCCATCACATTCCAGTACACGGAGGACGAGCCCGTCACGGAACAGCTC
GCGCTCCTGGAGGGCTTGACCACCAACGCAAAACTCGATAACTCTACCTTGTGTTTCATTGTG---AAGCAGTTCCCGAC
ATTGAGTGAGAAGGTCGCCACGCATGACTACCGTCTGAGCATGGACGAGATCTGGGAGATCGCTCGGCGGAAGGAGCGGG
TGGCCAGGGTACAGGATATTCGCCGTGCCAGGGACGATCCGCAGACGTCAGACGGGCAAGGCAGCTTCTC----------
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>SNPs
----S----S-S-------------------------------S--------S------------------S-------S
-----------------------------------S------------------S---------------S---------
--------------S-----------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------S-----------------S----S
---------SS-----S--------------------------------------------------S-------SS---
-----S-----------------------------------------------------S------S-------------
S-S-SSSSSSSSSSSSSSSSSS-------------S-------------------------S------------------
--------------------------------S---------S---SS--------------------------------
---------S------------------------------------------------SS--------------------
--------S----------------S-----S----S--S-----------------------------S----------
---------------------------------------S-------S----S----SS---S-----------------
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----------------------------S------SS------------------S--------S--S-S----------
-SSS------------S-----S-SS-S--------------------------S--S-------S--------------
-------------------------------------------------------S------------------------
-------------SS----------------S--------------------------------------S-------S-
S-------------------------S-----------------------------------------------------
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--------SS-----------------------------S---------------------------S------------
--------S---------------------S----SS--------S--------S-----------S-------------
-------------------------S-S----------------------------------------------------
-----------------------S--------S---S-----S-------S---S------------------SSSSSSS
--------S-------------------------------SSSSSSSS-----------------------S--S--S--
-----------------------------------------------S-SSSSSSSSSSSSSS-----------------
--------------S-----------------------------------------S------------------S----
-------S----------------------------------------------------------------------SS
S-----------------------------------------S----S-S------------------------------
-----------------S----S--------S-S----------------------------S-------S--SS----S
-----SSS-------SS-SS---------S------S---------S--------------------S-----S------
SS--------------------------------------S---S--S-------SS--SS-------------------
-S----------S-------------------S-------SSS-----S---------------S-----------S---
----S--S--S-S-----S-----------------------------------S----------------SSSSSS---
----------------------------------S----------------------------S----------------
-----------------------S-----------------------------S--S----S--S---------------
--------------------S------S-----------------------------------------S----------
----------------------------------------------S-----------S---------------------
>forward_683
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-----------------------TTCGTCTTCGTCGTCGTACG-------------------------------------
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>reverse_2712
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-----------------------------------------------------------------------TCAGGGTCA
GGGGTGTATGT---------------------------------------------------------------------
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