>input_sequence_68402
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------------------------ATGGCAGGAGAAGGAGACA---TCAAGCTGCTCGGCATGGTGGTGAGCCCATTCGT
GGTCCGTGTGCGAATGGCACTGCACATGAAGGGCGTGAGCTATGAGTACGTCGAGCAGGACCTCTTCAACAAGAGCGAGC
TCCTCCTCAGGTCCAACCCGGTGAACAAGAAGGTGCCGGTGCTCATCCATGGCGGCAAGCCCATCTGCGAGTCACTCGTC
ATCGTGCAGTACGCCGACGAGGTGTGGAGCGGCAAGGGCGCCTCCATCTTCCCCGCCGACCCGCACGAGCGCGCAGTTGC
TCGCTTCTGGGCCGCCTACGTCGACGACAAGGTATGTATTGTGTTTGT--------------------------------
-------TAT-----TTCGAAGCACCAGAGCCGTGGTACAAGAAGAGCTTCTCAACAACTGCGGGCACCAATGTCGCGGC
GGCGTCTGTTT-TGCAGCTGTTCCCTGCTTACATCGGCATCATGAAAGCGGCGACTGAGGAAGCAAGAGCGGAGAAGGCC
AAGGAGGCGCTTGTGGTGTTAGCGAACCTGGAAGAGGCCTTCGCCCAGTGCTCAAAAGGGAAGCCTTTCTTCGCCGGCGA
CTCCGTCGGGTACCTCGACCTCGCCGTCGGATGCAACCTGTTCTGGCTCGAGGCAATACGCAAGATGTTTGGGGTGACGT
TCTTTGACGTGGGCAAGACCCCGCTCCTGGCCGCGTGGGCGGAGCGGTTTGCCGGAACCGAGATGGCGAGGGAGGTTGTG
CCGGACGCCGACACCGCCGTGGTGTTTGCCAAGAAGCTTCAGGCTCGGTTTGGCTCTAACACGTCTGCCAAATAG-----
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------------------------------------------------------------------------
>chr4D_1_TraesCS4D01G225800
TCGCCTCCCCCGGCCGTGCCCGCTCCCGATCTCCCGGCCGCGCTCCTGGCCGCGCCCGGCCGTGCCTGTCCGCTCCCGAG
CTCTTGGCCACGCCTGGCCGTGCCTGCTCCCCCGCGCACAGCAGCAGCAGAGGGCGGGCGGGCTGGTCCTCCTCCGGCGC
CCGTGCTCGCACAACAACAACAACAGAGGACAAACGGGCTCGTCCTCCTCCGGCACTTGTGCTCCGTCGTGGTGAGCTGG
TGCTCCTCCGGCGCCCGTGCTCCGCTCTGGCGGGCTCGTCCTCCTCCCTGCCTGCTACGTGTTCGATGGAACGCCGAGGC
GGACATGACAAAAAATGCGTCTGTCCCCGTTGGATGCATCGGATCATTTGTTTAGATCGTGGT--GCAGATCAACGCGTG
CAGACGGTTTTGCATGTGC--GCCTTC----------TTTTGCTCGATCCACACAGGTCGACAAAGCAATAAAGATGGCT
CCCGAGGCCCGGAGCAATTACTTCGATCGGCTTATCCTGAGCGCTCACACGTGACGCTTGCGCGAACATTTATGTGGCCA
GCATCGATTTTCCCAGAAAGAGCATCAGGCA-------------------------------------------------
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--------------------------------------------------AAATGTATCTGATCTCCAGCATCAAATCTT
TTGCCCGAGAAATATTAGGAAGCAAGCAAACACT---ATCATCGAGTCATTGACTGATTGACAGCACGAAGCAAGCAAGC
ACTATCATCTCAGCGTTCCGT----------------------GCTATTATAATCTGGTTCGATGCTGCGTGCTGAGGTC
ACTGCTGATGCGTATACGTACTTTCCATGGCTGAAGCATTCCAAAGAT------CTCTATTAAAAATAGGCGTACTCGAT
GACTTTCAGACAGTGAACAATCAGACCAAGCGAGTAGGTTGGCTGATGCTACATAAGCGCCTCAACGAGAGGCTATTCTT
GCACAGACAAGAGCAAGTCAGAAACACCACATCACTGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGGAAAACAATGGCAGGAGAAGGAGACA---TCAAGCTGCTCGGCATGGTGGTGAGCCCATTCGT
GGTCCGTGTGCGAATGGCACTGCACATGAAGGGCGTGAGCTATGAGTACGTCGAGCAGGACCTCTTCAACAAGAGCGAGC
TCCTCCTCAGGTCCAACCCGGTGAACAAGAAGGTGCCGGTGCTCATCCATGGCGGCAAGCCCATCTGCGAGTCACTCGTC
ATCGTGCAGTACGCCGACGAGGTGTGGAGCGGCAAGGGCGCCTCCATCTTCCCCGCCGACCCGCACGAGCGCGCAGTTGC
TCGCTTCTGGGCCGCCTACGTCGACGACAAGGTATGTATTGTGTTTGT--------------------------------
-------TAT-----TTCGAAGCACCAGAGCCGTGGTACAAGAAGAGCTTCTCAACAACTGCGGGCACCAATGTCGCGGC
GGCGTCTGTTT-TGCAGCTGTTCCCTGCTTACATCGGCATCATGAAAGCGGCGACTGAGGAAGCAAGAGCGGAGAAGGCC
AAGGAGGCGCTTGTGGTGTTAGCGAACCTGGAAGAGGCCTTCGCCCAGTGCTCAAAAGGGAAGCCTTTCTTCGCCGGCGA
CTCCGTCGGGTACCTCGACCTCGCCGTCGGATGCAACCTGTTCTGGCTCGAGGCAATACGCAAGATGTTTGGGGTGACGT
TCTTTGACGTGGGCAAGACCCCGCTCCTGGCCGCGTGGGCGGAGCGGTTTGCCGGAACCGAGATGGCGAGGGAGGTTGTG
CCGGACGCCGACACCGCCGTGGTGTTTGCCAAGAAGCTTCAGGCTCGGTTTGGCTCTAACACGTCTGCCAAATAGAGTAC
TACTCCAGTGTAGGGTTTTTTTGGCGGGAA----------------ATTATCAAATTATCTCGGAAACCCCGTGTAATAA
ATGAGGCATATCATGGGGAATGGCATAATTTTTTTCCATATTTTCACAGAATGTCCCTTTATGGCTTATATATACTCCCT
CCTTTCCGGTTTATAGAATTTATCTTAAAATTTTAGTTTTTTCATTTTATAAGGCTCAATTTGGTTGTTTCCCATCACAT
GTTCAGATTCCAAGGTGCATTAAATCATTGCATGCAAGTATTAAGAGAAAATTGACCAATGCATGTAATTTATGCATGCA
TGCATTGCAATTAATGCATTGGTAAACATACTTTTTTGAGAAAAACAAAAGCATTAATTGGGCGTTTTTGCAAACTACAA
AAAGTATTCCACCAATCACCATATACCTTGCTTGGTGAGATTTTTGAATTGAGCCTTATAAACCGGAAAGGAGGGAGTAT
ATACTACTCATCTAAGTGATATTA--------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------TAGTAACATACACATATCCCTAGACTATGTTACTA
CCTTTCATAGTGGGTAGTAAAATAAGAGCAATTATAATAGAGCTGAGTCAGCGGGCTATAAGGAATAAACTAGTATATTT
CTGCTGAGTTGGAGGAAAGAGAAGAGGAGAGAGAAGGTAAGCGGGCTCTTCGTGAAGAGCCAGCTCTAGCACGTGCTCCT
AGGCACTTTGATGGGCTGTAGATGACACGGCACTGGCTATACTATTAACCATGCTCTAAGTATGGTAACATGCAAAGCCT
CATTTATTAGGTTATAGACTCATGTTGCACTGGGACATGTGATGTTACAGTAACTAGCTAAGTTACTCAAACTACCTCCC
TCCTCATTAACTCATTGCCACATAAGCAAATTTGTTGAGTTGGACTCGATGTTACTGCTGAAGTTACTCCCACTGTGGCT
AGTCTTATGGCAAACGATTAACACCAGCCCGCCGGCCAAAGCTACACCCGCTCGCGCGCGAGCTGTTCGGCC
>chr4A_359
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--------------------------------------TCGGATGATTTGTTTCAATCACGACGCGCAGATCAACGCCTG
CATACGGTTTTGCATGTGAATGCCTTT----------TTTTTCTAGATCCATACAGCTGGACAAAGCAATAAAAATGGCT
CCCGATTCCTGGACCAATTACTTCGATCGAAGC-----GAGCG-TCACATGTGACGTCTGCGCAAACATTTATGTGGCCA
GCATCGATTTTCCCAGGCTGGTCAGGCTGGTTGTAATGGGGAGTATAATAGTATCATACATATGATACTAGTGTATAATA
GTACCTTTCTAATGCATAGTATTATATATTAGTATCATGTAATACTCTATTTATTGTCATGCATGACACAAAGTAGCATA
GCATTTATTATAATACGATATCATAACATGATACTCCATCATCTCTTTCTTCATTTAATGCTACGACAAATCATCAAAAT
TGCCTAGTTGGCATGTATGATACTCCCTTCGGTCATTTTTACTCTGCATATTAGGTTTGTCTGAAGTCAATCTCATCCAA
CTTTGACCAAGTTTATATAAAAAATTATTGACGTTCACATAACAACATCAATATCATTGGATTCATCTCGAAATATATTA
TCATATTATATTTATTAGATATTATATATGCTAATAATTTCTAATATAAATTTGGTCAAACTTAGCACAGTTTGACTTTC
GGCAAATTCAATGTGCAGAGTAAAAAGGACCGGAGGGAGTACTAGCTATGATACTATCATTACGACCAGCCTCATAGTGG
GAAGTAACTTATACTAGTGTCATGCATATGACAGTAGTCTAAATTATTATCTTCATAGTGCAACGTAACATAGTAGTAGT
GTCATAGATGACTTTATTTATTAGCCTATAGACTCATCCTTTTCAGGAAGCGCTATGTTACAGTAACATATTATGTTACT
CCAAACACCTCTCTCCTCATTAAATACTTGCTACATAAGCAAAATTGTCTTGGGATGTGTTAAGTTACTACCTAAGTTAC
CCCCACTATGGCTAGCTTTATGTTACTCTAAATACCCCTCTTTTCATTAACTACATGCCATGTAAGCAAAAATTTCTTAG
AGTGCGTTATGTTATTACCTAAGTTACTCTCACTATGCCTAGCCTCAGGCAAATGTATCTGATCTCCAGCACCAAATGTT
TTGCCCGAGAAATATTAGGAAGCAAGCAAACACT---GTCATCGAGTCATTGACTGATTGACAACACGAAGCAAGCAAGC
ACTGATGATGCTAG-------------------------------TATTATAATCTGGTTCGATGCTGCGTGCTGAGGTC
ACTGATGATGCGCATACGTACTTTCCATGGCTGAAGCATTCCAACG------ACCTCTATTAAAAATAGGCGTACTCGAT
GA-------------------------------GTAGGTTGGGTGAGGCTACATAAGCGCCTCAACGAGAGGCTATTCTG
T---------CAGCAAGTCAGAAACACCACATCACTGAGAGAGCAAGGAGC-----------------------------
-----AGAGAGAGAAGGGAAAACAATGGCGGGAGAAGGAGACA---TCAAGCTGCTCGGCATGGTGGTGAGCCCATTCGT
GGTCCGTGTGCGAATGGCACTGCACATGAAGGGCGTGAGCTATGAGTACATCGAGCAGGACCTCTTCAACAAGAGCGAGC
TCCTCCTCAGGTCCAACCCGGTGAACAAGAAGGTGCCGGTGCTCATCCACGGCGGCAAGCCCATCTGCGAGTCGCTCGTC
ATCATGCAGTACGCCGACGAGGTGTGGAGCGGCAAGGGCGCCTCCATCCTCCCCGCCGACCCGCACGAGCGCGCAGTCGC
TCGCTTTTGGGCCGCCTATGTCGACGACAAGGTATGCACTGTGTTTGT--------------------------------
-------TATTTCCATTCCAAGCACCAGAGCCGTGGTACAGGAAGAGCTTCTCCACAACCGCGGGTGCCAATGTCGTGGC
GGCGTCTCTTT-TGCAGATGTTCCCTGCTTACATCGACATCATGAAAGCGGCGACGGAGGAAGCAAGAGCGGAGAAGGCC
AAGGAGGCGCTTGTGGGGTTAGCGAACCTGGAAGAGGCCTTCGCCCAATGCTCAAAAGGGAAGCCTTTCTTCGCCGGCGA
CTCCGTCGGGTACCTCGACCTCGCCGTCGGATGCAACCTGTTCTGGCTCGAGGCGATACGCAAGATGTTTGGGGTGACGT
TCTTTGACGTGGGCAAGACCCCGCTCCTGGCCGCGTGGGCGGAGCGGTTCGCGGGAACCGAGATGGCGAGGGAGGTGGTG
CCGGACGCCGACAGCGCCGTGGTGTTTGCCAAGAAGCTTCAGGCTCGGTTTGGCTCTAACACGTCTGCCAAGTAGAGTAG
-----CAGTGTACGTTTTCTTTTTCCGGATAGTAGTGTACGGTTTCATTATCGAATTATCTCGGAAACTCTTTGTAATAA
ATGAGGCAGATCATGGACAATGGCATAATTTTTTCTTCGTATTTTCA---------------------------------
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------------------------------------------------------------------------
>chr4B_359
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--------------------------------------TCGGATCATTTGATTGGATCACGGCAC--AGATCAACGCCTG
CAGACGGCTTTACATGTGCGTGCCTTTTCTTTTCTTTTTTTGCTCGATCCACACAGGTCGACAAAGCAATAAAAATGGCT
CCCGATTCCCAGGGCAATTACTACGATCGGCTTATCCTGAGCG-TCACATGTGACGCCTGCGCAAACATTTATGTGGCCA
GCATCGATTTTCCCAGAAAGAGCATCAGGCG-------------------------------------------------
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--------------------------------------------------AAATGTATCTGATCTCCAGCATCAAATCTT
TTGCCCGAGAAATATTAGGAAGCAAGCAAACACTAGTATCATCGAGTCATTGACTGATTAACAACAGGAATCAAGCAAGC
ACTATCATCTCAGCGTTGGGCGGTGAAAAGGTTGACCTGGCCAGCTATTATAATCTAGTTTGATGCTGCGTGCTGAGGTC
ACTGCTGATGCGTATACGTACTTTCCATGGCTGAAGCATTCGAAAGATCTCTACCAGTATTAAAAACAAGCGTACTCAAT
GGTTTTTAGATAGTGAATAATCTGACCAAGTAAATAGGTTGGCTGACGCTATATAAGCGCCTCAATGAGAGGCAATTCTT
G--CAGACAACAGCAAGTCAGAAACACCACATCACTGAGAGAGCAAGGAAT-----------------------------
-----AGAGAGAGGCGGGAAAACAATGTCAGGAGAAGGAGACA---TCAAGCTGCTCGGCATGGTGGTGAGCCCATTCGT
GGTCCGTGTGCGAATGGCACTCCACATGAAGGGCGTGAGCTATGAGTACATCGAGCAGGATCTCTTCAACAAGAGCGAGA
TCCTCCTCAGGTCCAACCCGGTGAACAAGAAGGTGCCGGTGCTCATCCACGGCGGCAAGCCCATCAGCGAGTCCCTCGTC
ATCGTGCAGTACGCCGACGAGGTGTGGAGCGGCAAGGGCGCCTCCATCCTCCCCGCCGACCCGCACGAGCGCGCTGTTGC
TCGCTTCTGGGCCGCCTACGTCGACGACAAGGTATGTACTCTGTTTAGGAGTACATTTTTATGACAAGTAATTTCGAACG
GTGGGAGTAT-----TTCCAATCACCAGAGCTTCT--------------------------------------------C
GGCGTCTATTAATGCAGCTGTTCCCTGCTTACATCGGCATCATGAAAGCGGCGACTGAGGAAGCAAGAGCGGAGAAGGCC
AAGGAGGCGCTTGTGGGGTTAGCGAGCCTGGAAGAGGCCTTCACCCAGTCCTCAAAAGGGAAGCCTTTCTTCGCCGGCGA
CTCCGTCGGGTACCTCGACCTCGCCGTCGGATGCAACCTGTTCTGGCTCGAGGCAATACGCAAGATGTTTGGGGTGACGT
TCTTTGACGTGGGCAAGACCCCGCTCCTGGCCGCGTGGGCGGAGCGGTTTGCGGGAACCGAGATGGCGAGGGAGGTGGTG
CCGGACGCCGACAGCGCCGTGGTGTTTGCCAAGAAGCTTCAGGCTCGGTTTGGCTCTAACACGTCTGCCAAGTAGAGTA-
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>chr3B_1001
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------------------------ATGGCCGGCGAAGGAGACGACGTCAAGCTGCTGGGCTCGGTGGTGAGCCCGTTCGC
GGTCCGCGTGCGAATGGCGCTGCACCTCAAGGGCGTGAGCTACGAGTACCTGGAGCAGGACCTGTTCCACAAGGGTGAGC
TCCTCCTCGCCGCCAACCCGGTGCTCAAGAAGGTTCCCGTGCTCATCCACGCCGGCAGGCCCGTCTGCGAGTCGCTCGCC
ATCGTGGAGTACGTCGACGATGTCTGGGCCG---ACGGCGCCTCGCTCCTCCCTGCCGACTCTTACGGCCGCGCCGTCGC
CCGCTTCTGGGCCGCCTACGTCGACGACAAGT------------------------------------------------
--------------------------------------------------------------------------------
------------------TGTTCCCCGCGTGGATAGGCATCCTGCGCGCGTCCACGGAGGAGGACAGAGCCGAGAGGCTC
GACGCCACTCTCGCGGTGGTCGGGCTCATGGAGGACGCCCTCGCCCAGTGCTCCGGTGGGAAGGACTTCTTCGCCGGCGA
CTCCGTCGGGTACCTCGACCTTGCGCTCGGGTGCAACCTGTCCTGGTTCAAGGCGCTGCGCGAGATGTTCGGCGTGACGG
TCATCGACGCCAGCAGGACTCCGCGCATGGCCGCCTGGGCTGAG------------------------------------
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>chr6D_1940
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-------------------------------------------------------------------ATATATACTCCCT
CCTTTCCGGTTTATAGGC-TTATCTCAAAATTTTAGTTTTTCCATTTTATAAGGCTCAATTTGGTTGTTCCCCATCACAT
GTTCAGATTCCAAGGTGCATTAAATCATTGCATGCAAGTTTTAAGAGAAAATTGACCAATGCATGTACTTTATGCATGCA
TGTATTGCAATTAATACATTGGTAAACATAATTTTTTGAGGAAAACAAAAGCTTTAATTGGGTGTTTTTGCAAACTACAA
AAAGTATTCCACCACTCACCATCTACCTTGGTTGGTGAGATTTTTGAATTGAGCCCTATAAACTGGAAAGGAGGGAGTAT
GATACTAGCTAGTCTATGATATACTAGCTACCTCACTAAGAGCATGGTTAATAATACAGCCAACGGTCGGATATAAGAAG
TTGCCATGTCATATACAGCGAACCTCTTAGCCGGCATGTACAATAATAAGTTTTAAATACGTACTAGTTTATCAATAATT
GGCCCACCTTACATCCTCACAAAGTGTTTTGGGTCTCGTGTTGCAGCTGGCTCTACTAACCAAGAGCCCGCTTCTCTTCT
CTCTCCTATTCTCTTAATTTCCTCCAACTAATAAGCACATATATATTATTCTATTCCTTATATCCTGCTTATGTCACTCT
ATTGTACTTTCTCTAAGACTAGCCACAATGGAGAGTAACATACACTAGTAACATACACATATCCCTAGACTATGTTACTA
CCTTTCATAGTGGGTAGTAACATAAG------------------------------------------------------
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------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S----SS--S--------------S--
--------------------------S----------------------------------------------S------
-----SS------------------------------------S-----S-------S-----S----------------
------------------------------S-------------------------------------------------
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---------------------------------------------------------------S----------------
-----------------SS-S-----------------------------------------------------------
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--S---S---S------S----S-------SS--------------S---------------------------------
-SS-------S------------------------------S-SS--SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---------SS----------------------------------------------------------------
-------------------------------------------------S------------------------------
-------------------------------------------------S-----------------------S------
------------------------------------------------S-------------------------------
--------------------------------------S-----------------------------------------
------------------S---------------------S------------S-----S-----SS---------S---
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------S-----------------------S---
-------------S---------------------------------------------------------S-------S
SSSSS-------S-S---S---SS-S---S----------------------S---------------S-SS--------
--------S-------SS----------------SSSSSSS---SSSSSSSSSSSSSSSSSSSSSSS-------------
----------------SSS------S---------------S---------------------------S----------
---------------------------------------S---------------------------S------------
--S------------S--------------S---------S-----------S---------S-----------------
--------------S-------S-------S------------------------S-------S----------------
SSSSSSSS-SSS-SSS------SS--------------------------------------------------------
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--------------------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_310
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--------------------------------------------------CCTGCTACGTGTTCGATGGA----------
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>reverse_2408
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-------GTTTTGCAGCTGTTCCCTGC-----------------------------------------------------
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>forward_1884
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------------------------CACCACATCACTGAGAGCGA------------------------------------
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>reverse_3787
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--------------------------GAGAGAGAAGGTAAGCGGGC----------------------------------
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------------------------------------------------------------------------
