>input_sequence_68360
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-------------------------------------------------------------------------------A
TGGCAGAGCTGAAGCATAAGCCGTTCGAACAAGTGCGGCGCGCCATAATGAAGATTCTTAAATTGAATGAAGCAACGCAT
GAACTCAATTTGCATCACATTTTGTGTGTAAGGACGGTTCCCTCGGCTGCTCCCTACCATGTGCTCACTGACATTATAGG
GGAGGCGTCTTGGATGGCATTTTTGAAAGTGTCACTCCTTCAAGTTCGTGCTTTCAGACTGTTGGCCTGCTGGACCGTCA
AGAAAAGGGACTCTGTTCCAAATGCATCTGACAGCAATAACACAACAGTTCCAGACGAAGGATATGAATCCGATGATGGG
ACCTGGCCAAATTGCAAGCACGATAGACCATGCACCATCGAAACCTCATGGCGCACCGAAGACCCAGGACGAAGGTTCTT
CCCCTGCCCTCTCTTCATGGTGAGTTTCCTTCGGAAAATTGTTTATCACGGTTGTATCAT---TACTGCTCTGAACGTAC
AATCTCTGCATTAGTACGTCCACAATGAAATTTCCCTTTTTAATCAGCATTCGGGAGAAGACTGCAAGTTCAGCAAATGG
TTGGACAAGAAGTTCCCTGAGAATGCAATCAAAGTCATCAACAGACTCCAGGACGACGTTGAATCCCTCCAGCTGCAAGT
CGATAACATGAAGTGTGAGCTTGAGGAACTCCGTCACCGTCAGAGCAAAAGAGCTACCGGAGAAGCTGTTGCAAGTGATG
GAGACAGGTGCCCCTGTGGCAGCAGCCCTTGCCACTTGGCCTGTCGCAACCGAAGCAAACCTCCTAGAGTGGCCAGGGAC
AATTAG--------------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G419900
TAAAAGGATCAGCTGGATGGAATGTTTTTGCTAACGTTTTTTTTA----ATATTGTTTGGTTCATGGATCAGAACAGTGA
TTTTTGCCGACGACGGACGGCAAACGACTCCGTTGGCCTTTTCCATGCCGTGCGTGGCCGTGGTCGGGGCCTCTCCATCT
CTGCTCCGCATACACGTACGTTCAGGTGGCTGCCCCCCGCCCTGCATTTTTCCGACGGCACCTGCAGCCAGTATGACAGG
TGTGGTGGCGTGGCACCTGCCGCCACTGAGGATGGCGGCAGCTTGCCCATCGGGGCTGTATAGAAAGGACCGCCGCTCAG
TGAGGAAAAATATCTAGCTTCATCTCATCCGGGTCAAAAGAGAAGCTGGATAAGGTTCGTGGTAGGGAGGAAGCAAGAGA
CGGGTTCTTCCAGATCTGGTGGTTGCGCCATTGCTCGGAGCCGCATCAGAAGCCAGCCAGGTGAGTTTCTCTCGGATCCG
CTGCTTTCTTCTACCGCAGTGGGAAATGGAAGGGAAAAATGCTACTACATAGAAAAGAGCTTGACAAGTTGGGATATAAA
CTGTCGGGCAGAGCAGATCTGGAAAGTTTTACCTTCCAAATCGCTGTAAAGATGTAGAAACGTGGTTTTATA--CGATTC
CATTCGATGTGAAATTGTAGAAGAAAAGTTTTTCCTCTACCTTGTGGGTTCGTATGGCGTGAAAATTGC-----------
--------------AGAAGTTGCTACTGTTATGGATGGGGAATGTCACGGAAAGGTGGTAGATTTGTTTCTAGTGGCGAT
CTAGCTTC------------------------------------------------------------------------
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----------------AGAAGAAACGGAACAAAAATGTCTAGAAAATGCCAGGGAATGTGGGGAAGCCAGCCTAATATAT
TTCTTAAGGTCCAAGATGCGGTGTAATAATGTGCAGTCGATATTTTTCTACAGGATGCCATTCCCAGATGAATATCTGCT
ATTTCGCACAGCAGGAAAGGTTTGGGATTGACCTGATGGTGTAAAACTGAGTCCTGATTGCCCATTTGTGGTTTGGCCGA
TGGCAGAGCTGAAGCATAAGCCGTTCGAACAAGTGCGGCGCGCCATAATGAAGATTCTTAAATTGAATGAAGCAACGCAT
GAACTCAATTTGCATCACATTTTGTGTGTAAGGACGGTTCCCTCGGCTGCTCCCTACCATGTGCTCACTGACATTATAGG
GGAGGCGTCTTGGATGGCATTTTTGAAAGTGTCACTCCTTCAAGTTCGTGCTTTCAGACTGTTGGCCTGCTGGACCGTCA
AGAAAAGGGACTCTGTTCCAAATGCATCTGACAGCAATAACACAACAGTTCCAGACGAAGGATATGAATCCGATGATGGG
ACCTGGCCAAATTGCAAGCACGATAGACCATGCACCATCGAAACCTCATGGCGCACCGAAGACCCAGGACGAAGGTTCTT
CCCCTGCCCTCTCTTCATGGTGAGTTTCCTTCGGAAAATTGTTTATCACGGTTGTATCAT---TACTGCTCTGAACGTAC
AATCTCTGCATTAGTACGTCCACAATGAAATTTCCCTTTTTAATCAGCATTCGGGAGAAGACTGCAAGTTCAGCAAATGG
TTGGACAAGAAGTTCCCTGAGAATGCAATCAAAGTCATCAACAGACTCCAGGACGACGTTGAATCCCTCCAGCTGCAAGT
CGATAACATGAAGTGTGAGCTTGAGGAACTCCGTCACCGTCAGAGCAAAAGAGCTACCGGAGAAGCTGTTGCAAGTGATG
GAGACAGGTGCCCCTGTGGCAGCAGCCCTTGCCACTTGGCCTGTCGCAACCGAAGCAAACCTCCTAGAGTGGCCAGGGAC
AATTAGAATTAGGCCTCCAAATATGCAGAGTGGTACGTGGCACCACCCTAGTTTCATTTGTAATGGAGCTCTTATGTCCA
TTTTGTTGCAACCGTCGTGCTCTGAGAATGTGATCTATGATCTAGGTAGTTTTAT-GATCTGTTGGTTATTGTTGAACAA
TTCGTCGTTGGATTTCAATGAGACGCTGAACATTCTGAAGTTGTTGTGTTTATGCATTGTCCCCTGTTTAAATAGTTTGC
ATCAACATATTATCTTGCCACAACATACATTGGTCCGACTCTAATGTCTAATCCAACCGCACTGTCAACTTGAATCCTTC
CAGACTGGCGAAAAAGTGTTGA-TTTGAAAGTTGCAAATGCTTTAGTATGCATGAGTGTGCAGTAAGAAAATTCAGTCTT
TATCGATGATCCCTGA------ATCTCTCTGAGCGTTCACGGTGTTGTTCTCTACGATGTGTTCAGGGAAGAGCACCCCT
GCACTGGATTCAGAGATTGTATCT-------------------------ACGGTAAGGATTAATACCAGTCTAGGTCTCT
AGGATCACAAGATCAGTCCCTAGGAAACCACTACGACTGATTGG----------ACTACACGCAAAATCTCCAAATGAAA
TATCC---CCGGAGACGAGGCGCCGGTGAAAAGCCGTAGGCTTGTGACGCTGGAGCAGAATCGCGGAGAGGCTGGCGGGA
CAGGTCTAGCCGTTGAGGAAGCGCTCGTCAGTGAATACAGCAACATCCAACAACTAG-----------------------
----------------------------AAGGGAAATCTGACAGTGCATGTTTGTTTCTTGAATATCAGCAGCAAC--AT
ATATTCATCTTCGTTAACAAGTA---CTATTTGCAAACAAAAACACAAACACTTCTTCTTCGGTACAACCCTCTAAATAC
AACAACGGCTGAGATCGCTCCGTACCCCTTCATTAAAAAGGATAGGATCGTCCCATCACATAAAAAGCCCCCGCCCGCGC
GGCGGGGCTGTACCCGCCCGCGCGACGCGGCTGTACCCGCGCGACGGGGCTATACCCGCGGGGCCGGA
>chr2B_2
AAAAGGC--CAGCTGGGTGAAATGTTTTCGTCAACATTTTTATTTTATGATATTGTTTCGTTCATGGGTCAGAACAGTGA
TTTTTGCCGACGCTGGACGGCAAATGACTCCGTTCGCCTTTTCTATGCCGTGCGTGGCCGTGGTCGGGGCCTCTCCATCT
CTGCTCCGCATACACGTACGTTCAGGTGGCTGCCCCCCGCCCTGCATTTTTCCGACGGCACCTGCAGCCAGTATGACGGG
TGCGGTGGCGTGGCACCTGCCGCCATTGAGGATGGCGGCAGCTCGCCCATCGGGGCTGTATAGAAAGGACCGCCGCCCAG
TGAGGAAAAATATCTCGGTTCATCTCATCCGGGGAAAAAGAGAAGCTGGATAAGGTTCCTGGTAGGGAAGAAGCAAGAGA
CGGGCTCTTCCAGATCTGGTGGTTCCGCCATTGCTCGGAGCCACATCATCAGCCAGCCAGGTGAGCTTCTCTCGGATCCG
GTGCTTTCTTCTACCGCAGTGGGAAATGAAAGGAAAAAAATGCTAGAG-TAGAAAAGAGCTTGACAAGTGTGGATATAA-
CTGCCGAACAGAGCAGATCTGGTTTCCG----CTTCCAAATCGTTGTAAAGTTGTCTAAATGTGGTTTCAGAATCGATTC
CATTCGATGTGAAGTAGTAGAAGAAAAGTTTTTCCTCTACCTTGTGGGTTCTTATGTCATGCAAAACAAATTAAAATCTT
GGAGAAGAAACTGTAGAAGTTGCTACTGTCATGGATGGAGAATGTCACGGAACGCTGATAGATTTGTTTGTAGTAGCGAT
CTACTCCCTCCGTCCCATAACATAAGATCGTAGCTTGCAAGACGATCTTATATTACGGGACGAGGGGGTAGTTTAGACAG
TTTTGCTAGAACTCATCTAGATGAGATATAATTTGGTCTCATTCATCTTTTATAGCCATTGGATGTGATGCTATAAGATG
CGTGTGTGCTGACGTGGATTGTATTTGTTCTTGTTTTCAAAGTGAATGAGACCAAATTATATCTCATCTAGATGAGTTCT
AGGTACTCCCTAGTTTAGAAGAAATGGAACCAAAAAGTCTCGAAAATGCTAGGGGATGTGGGTAG------------TAT
TTCTTAAGGTGGAAGATGCGGCGTAATAATATGCACTTGATATTTGTGTGCAGGATGTCATACCCATCTGAATATACGCT
ATTTCGCGCGGAAGGAAAGATTCGGCATGGACCTGATGGGGTAAAAGTGAGTCCTGATTGCCCATTTGTGATCAGACGGA
TGACAGAGCTCAAGGATAAGCCATTCCAACAAGTGCGACACCTGGTAATGAAGGTTTTTCAATTGAATGAAGCAACGTAC
GAGCTCAGTTTGCAGCACCTTGTGTATTCAAGGACAGATCCTGGCACTCCTCCATGCAATGTACTGATTCATATAATAGG
GGAGGATTCCTGGAGGACATTTCTAAATGTTGCAGCCCGTAATGTTCGCGCTTTCAGACTGTTCGCCAGATGGAATGTCA
AGAAAACAAGCTCTACTCCCAATGCAACTGACAGCAATAACACAACAATTCCAGACGAAACCGATGAATCCGATGATGGG
ACCTGGCCAAATTGCAAGCACGATAGACCATGCACCATCGAAACTTCAAGGCGCAACGAAGACCTAGGTCGAAGGTTCTT
CCGCTGCCCTCTCTTCATGGTGAGTTTCCTT-GGGAAAATGTTTATCACGATTGTATCATCATTACTGCTCTGA----AC
AATCTCTGCATTAGTACATCCACAATGAAATTTCCCTTTTTAATCAGCATTCGGGAGAAGACTGCAAATTCAGCGAATGG
TTGGACAAGAAGTTCCCTCAGAATGCAATCAAAGTCATCAACAGACTCCAGGACGACGTTGAATCCCTCCAGCAGCAAGT
CGATAACATGAAGTGTGAGCTTGAGGAACTCCGTCACCGTCAGAGCAAAAGAGCTACCGAAGAAGCTGTTGCAAGTGATG
GAGACAGGTGCCCCTGTGGCAGCAGCCCTTGCGACTTGGCTTCTCGCAACCGAAGCAAAGCTCCTAGAGTGGCCAAGGAC
AATTAGAATTAGGCCTCCAAATATGCAGAGTGGTACGTGGCACCACCCTAGTTTCATTTGTAATGGTGCTCTTATGTCCA
TTTTGTTGCAACTGTCACGCTCTGAGAACGCGATCTGTGATCTAGGTAGTTTTAAAGATCTGTTGCTTATCGTTGAACAA
TTCGTCGTAGGATTTCAGTGAGACGCTGAACATTCTGAAGTTGTTGTGTTTATGCATTGTCCCCTGTTTAAATAGTTTGC
ATGAAC----TATCTTGCCACAACATACGTTGGTTCGACTCTCATGTCTAATCCAACCACACTGTCAACTTGAATCCTTC
CAGACTGGCAAAAAAGTGTTGGTTTTGAAAGTTGCAAATGCTTTAGTATGCATGAGTGCGCAGTAAGCAAATCCAGTCTT
TATCGATGATCCCTGACCCTGAATCTCTCTGAGCGTTCACGGTGTTGTTCTCTACGACGTGTTCAGGGGAGGGCACCCCT
GCACTGGATTCAGAGATTGTATCTACCAAGAATGCCAAGGGCAGGAGCAACGGTAAGGATTAGTACCAGTCC--------
AGGATCACAAGATCAGTTGCTAGAAAACCACTACGGTGTGGCTGGACCACACACACCACACAGAAAAACTCCAGATGAAA
CATCCCCACCGGAGACGAGGCGCTGGTGAAAAGCCGGAGGCTTGTGACGCTAGAGCAGAATCACAGAGAGGCTGACGGGG
CAGATCTAGCTGTTGAGGAAGAGCTCGTCGGCGAATGGCATTGTGGTAGCCTGCATCGACCACAAATACAGTGACCAGAG
TCGAATACAGAAACAAAACCAACAAATAAAGGAAAATCTGACAGTGCATGTTTGTTTCTTGAATATCACCAGCCATATAT
AAATTCATCTTCAATAACATGTACTCCTATTTGCAAACAAAAAACACA--------------------------------
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>SNPs
S---S-SSS-------S--S--------S-SS---S-----S--S-------------S--------S------------
------------SS----------S---------S--------S------------------------------------
-----------------------------------------------------------------------------S--
--S----------------------S-----------------S--------------------------------S---
---------------S-S---------------SS-----------------------S---------S-----------
----S-------------------S-----------------S-----SS---------------S--------------
S---------------------------S----S-----SSSSSSS-SS--------------------SS--------S
---S--SS--------------SSSSSSSSSS-----------S-------S---SS---S-------S-S---------
-------------S-S-----------------------------------S----S-S--S---SSSS-----------
-----------------------------S--------S-------------S-S--S-----------S----S-----
---SSSS-------------------------------------------------------------------------
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------------------------S-----S----S----S--------S----S-------S-SSSSSSSSSSSSS---
----------SS---------S--------S----S-S-------S-S-S-------S---S----SS-------SS---
-------S-S-S-------S--S--S--S----------S------S-----------------------S-SS-S-S--
--S-------S---S-------S---S----------S-S-SSSS--------S--S--S-----------------S-S
--S----S------S---S--S---S-SS------S-S---SSSSS--S----S-S-S----S--S-S-S-S--S-----
-----SS--S----S-S-----S-S--S--SS--SS--S-S-S-----S--------------S---S-S----SS----
------SSSS----SS---S------S--------------------S-----------SSSS-----------------
--------------------------------------------S---S------S--------S---S-----------
--S----------------------------S--S---S-----------S-----------------------SSSS--
-----------------S-------------------------------------------------S------S-----
------------------S------------------------------------------------------S------
-----------------------------------------------------------S--------------------
--------------------------------S-------S-S----------------S---------------S----
------------------------------------------------------------------S-------------
------------S---SS----------S-S-----S-----------------S----------S----S---------
--------S--------S--------------------------------------------------------------
--S---SSSS------------------S-----S-------S---------------S---------------------
---------S-----------S------------------------------------S--------S----S-------
---------------------------------------------------------S----------S--S--------
--------------------------------------------------------------S--------SSSSSSSSS
-----------------SS----S-----------SSSSSSSS-------------S----SS----S-----S------
S----------------------S------------S--------------S----------S-S---------S----S
---S------S----------S-------S-S----SSSSSSSSSSSSSS-SS-SSS-----------------------
--------------------------------S-----------------------------------S----S-S----
-S----------SS-----S-----------------------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_243
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---------------------------------------------------------------GCAGCCAGTATGACAGG
TGT-----------------------------------------------------------------------------
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>reverse_1683
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--CCTGCCCTCTCTTCATGGTG----------------------------------------------------------
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>forward_1307
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-------GCTGAAGCATAAGCCGTTCG-----------------------------------------------------
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>reverse_2538
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---------------------------------------------------------TGTGTTCAGGGAAGAGCACC---
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--------------------------------------------------------------------
