>input_sequence_68355
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---------------ATGGCGTCGTCCAGGAGAGCCCTCATCCTGCTGGCCGTCGTGCTGGCGGCGGTGCCGGCGGCGCT
GAGCCAGAAGACGACGGCCCCGGCGCCCGAGGCGGCGCCCGAGACGCCGGAGGCGCCTGCGGCGGGGACGACGCCCAAGG
CGGCGGCGGCGCCGAACGTGACGGCGGTGCTGGAGAAGGCCGGGCAGTACACCAAGTTCATCCGGCTGATGGCGTCGACG
CAGCAGGACACGCAGCTGAACGCGCAGGCCAACGACTCGGACACGGGCTTCACGGTGTTCGCCCCCACCGACAGCGCCTT
CAACAGCCTCAAGCCGGGCACCCTCAACTCGCTCTCGCAGCAGGACCAGGTGACGCTGGTGCAGGCCCACATCGTCCCCA
CCTTCTACTCCATGGAGTCCTTCGAGACCGCCAGCAACCCCGTCCGCACCCAGGCCTCCGGCACCGACGGGCCCTGCACC
GTCAACGTCACCGCCACCAGCAACAGCGCCGTCAACGTCTCCACGGGGATCGTCCACACCACCGTCGGCGCCGCGCTGCG
CGCCACCAGGCCGCTCGCCGTCTACTCCGTCGACAAGGTGCTGCTGCCCATGGACCTCTTCGGCCCCAAGCCGCCCGCCT
CCGCGCCGCCGGCCCACGGCAAGAAGCCCTCGTCGGCCAAGGGGGCAGCCAAGGCGCCCTCGGGCGACGACGAGGACGAG
GAGGAGGCCCCGCCCGCCGGAGCCGCCGCCGCCGTCGGCGCCGGCTGGAGGAGCCTGGTCGCCGTGGTGG---CCGCCGC
CACCGCCGCGTGCCTCTTGTAA----------------------------------------------------------
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>chr1D_1_TraesCS1D01G404600
CGATGCAGATCACAGGCCTCCGCTCCTTTTGTGTCTTTTCTTTTTCGGGGAAGCAGCTGGGCT----------------T
ACAGCTGCTTTCGCGTCGCCGCTCTTGG----------CGCGGACATACATTTGTGTCGGTAGAACGAACGGGGG----T
GCTGGCGGAGCACCCAAG-----TCCGTCTGCCAGACG-ATAGAATCTAGCCATGTTCAGTCAGTGCGCTCCCTTTTCTT
CTTCAGGTTTGGCCTCCGCTGGCGATT----------CGAACAATTCCGGTCGTAGGAGGAGACCACCAACATGTTAGCA
ATAGCG------------GCAGTCCATGTGAGTGACACAGTGAAATCCATGTGAGAACTGCAGCGG--------------
-------CCTCTTTCACCCCGAAGGAGCATTTCTTCACATGCCATTT----TGTCACGGCCATGCTAACAGCAGCCGGCC
CAAAGAAACAAAAACTGCCCAGACTGTCCTGCAGTGCCCGCCCCATCACGCACCACCGCACCTGCAAA-----GCTGCAG
CAAATTGGATTCAGCGCCAGCATCTGAAGACACTCAACCGCAGAAAAACAAAAAAGCATCTGAAGACACTCTTTTAAATT
GGTTCGCTTACTTTTTATAAAGAGAAGATCAACTTGAAGCTCATCTGGCATGTGTACTTAACATATCGCGAATTAACC--
----------------------------CGATCTGCATCTCAAAACGATTCTGCAGCTGTATTCAGCAGCTGAGCTGAGG
CATCTGGTTACTTAATTCCAAGAAAAATAATGTGAGGATCGCACGGCCAACTTGGCCTTAATCTTCTCCCCAATCCATGC
GCCCCC-ACTACCATCGTGTCGGCAGCCATATCACCCGATCATGG---------TCAACACTAACCCAGACCAGCCAGTC
TGTTACCATCTTCCCTTCCCATCTCGCCTCCT----CACACAGCTCCAAAACCCCCAGCTCCATTCCCATCCCCAGTTAT
ATATCACATCACCTTCCCCTGCTTTCAGCACTCCTCCACACTCTTAAGCTAAGCTAAGCAAGCCAGCATCTCGATCTACT
CT---TCCTCCAGCAATGGCGTCGTCCAGGAGAGCCCTCATCCTGCTGGCCGTCGTGCTGGCGGCGGTGCCGGCGGCGCT
GAGCCAGAAGACGACGGCCCCGGCGCCCGAGGCGGCGCCCGAGACGCCGGAGGCGCCTGCGGCGGGGACGACGCCCAAGG
CGGCGGCGGCGCCGAACGTGACGGCGGTGCTGGAGAAGGCCGGGCAGTACACCAAGTTCATCCGGCTGATGGCGTCGACG
CAGCAGGACACGCAGCTGAACGCGCAGGCCAACGACTCGGACACGGGCTTCACGGTGTTCGCCCCCACCGACAGCGCCTT
CAACAGCCTCAAGCCGGGCACCCTCAACTCGCTCTCGCAGCAGGACCAGGTGACGCTGGTGCAGGCCCACATCGTCCCCA
CCTTCTACTCCATGGAGTCCTTCGAGACCGCCAGCAACCCCGTCCGCACCCAGGCCTCCGGCACCGACGGGCCCTGCACC
GTCAACGTCACCGCCACCAGCAACAGCGCCGTCAACGTCTCCACGGGGATCGTCCACACCACCGTCGGCGCCGCGCTGCG
CGCCACCAGGCCGCTCGCCGTCTACTCCGTCGACAAGGTGCTGCTGCCCATGGACCTCTTCGGCCCCAAGCCGCCCGCCT
CCGCGCCGCCGGCCCACGGCAAGAAGCCCTCGTCGGCCAAGGGGGCAGCCAAGGCGCCCTCGGGCGACGACGAGGACGAG
GAGGAGGCCCCGCCCGCCGGAGCCGCCGCCGCCGTCGGCGCCGGCTGGAGGAGCCTGGTCGCCGTGGTGG---CCGCCGC
CACCGCCGCGTGCCTCTTGTAAGATGAAGAAAAATGGAGCTCGGAGGATCATGGTTGTTCATGAGACCGACAGATCGATG
GAGACTAGCTGCGTGCGTGCATGTTGTGCATGGATTTGGATAGGTTACTACTAGTAGTTC--TTGGTGGCTGCTGCTTCT
CTTCTTTCTTTTGTTAAATGTTCAGTTTTGCTGCTCCTTTTCTTCTTCTCTTGTTATATTGAACCGGCGAGAAAGTTTGG
GCTGAAATGTGATGAAATGTTTCACTGTTGAATTAAGCCGTC-----GTTGGATGATTAAATTCTACTAGCACTGCATTT
TATCTTCAGCTATTTAGCCGTTAATTT---------------------------------ATGTCT---------GAATC
CGGTTGTCGGTGGTGAAAACGAACACTTAATACTCTCACGAGGCAACCTTTTTCTGTTGTGGAAAAATTGAAGCCACAAG
TAGATCTTCCATCGATCTGGAAGACTGTAAAGGAAAATGAGATTTGGTGCTGCTATGTCTTTTTATTAGAGAGAAGAAAC
TTTTTTAGGGCAACTTGGTGCCAATGGTTGTTTTTTAAGAGCAACTTGGTGTCAGTAGCTGACTAGATGGATCTGAGC--
--ATTTATCAATCCAGATACTCCAGCAG-------------------------------GGACTGGACAAACTAAGCCTG
CTTGTATCTGGATCAGAAGATGGGCTTGGTCTGGGCCCTGTCTCATCATGCTTGGTGGTTGGATCCTGTGTTTGT----G
GCCATTGAATTCTATCACGGGCTAACTCTCTTCTTCTTCCTTTTTTGCGAAATAACGGGCTAGCACAGCCAGGCCTCCTA
GTGTAAATGCAGCTAGCCTAAACAAAGTGTAAATGCAGCTACAGTACAGAGCTGTGGGCTCCGTACAATGCAAGGTGCTT
ACGAGAGGTGCTTGAAGAAATAAAACATGCTTTCTTTAAGCACCGGTGCTTATTTATACATGATAGACGCTTAATTAGGC
GTCTCTCCTATAGAAATAGACACTGGTGCTTTAGAAAAATCCGGTTTATTTTTCTAAGCACCCCTAAGCA
>chr1A_1
CGATGCAGATCACGGGTC-----TCTTTTTGTGTCTTTTCTTTTCCGGGGAAGCAGCTGGGCT----------ACACTCT
ACAGCTGCTTCCGCGTCGCCGCTCTCGATCGGCGCACACGCGGACACACATTTCTGTCGGTAGAACGAACGGAGC----T
GCTGGCGGAG------------------CTGCCAGACG-ATAGAATCTAGCCATGTTCAGTCAGTGCGCTCCCTTTTCTT
CTTCAGGTTTGCCCTCCGCTGGCGATTTCAGATCGTGCGAACAATT----TCATAGCAAGAGACCGCAAACATGTTAGCA
ATAGGAGCAGC---AGCAGCAGTCCATGTGAATGACACAGTGTGATCCATGTGAGTGACACAGTGTGATCCCTGCACCTG
CAGCGGCCCTCTTTCACCCCGAACGAGCATTTCTTCACATGCCATTT----TGTCACG----------------------
----GAAACAAAAACTGCCCAGACTGTCCTGCAGTGCCCGCCCCATCACGCACCACCACACCTGCAACCAAAGGCTGCAG
CAGATTGGATTCAGCGCCAGCATCTGAAGACACC------------------------------------CTTTTAAATT
GGTTCGCTTACCTTTCCTAAAGAGAGGATCAACTTGAAGCTCATCTGGCATGTGTACTTCATAATTATTTGCCATCAACA
TTCAAAAAAGAAATTTACTTGCCAAAGTCGCTCTGCATCTG--AACGATTCTGCAGCTGAGCTG---AGCTGAGCTGAGG
CCTCTGGTTAAT---------------TAATCTCAGGATCGCACGGCCAAGTTGGCCTTAATCTTCTCCCCAATCCATGC
GCCCCC-ACTAGCACCGTGTCGGTAGCCATATCACCCG------GCGGTCATGGTCAACACTAACT------AGCCAGTC
CGTTACCATCCTCCCTTCCCATCTCGCCTCCTCCCTCACACAGCTCCATCC---------CCATCCCAATCCCCAGTTAT
ATATCACATCACCTTCCCCTGCTTTCAGCACTCCACACTCTCGCCAAGCCACAC--AGCCAGCCAGCGCCTCCATCTAGC
ACCACTCCTCCAGCAATGACGTCGTCCAGGAGAGCCCTCATCCTGCTGGCGGTGCTGCTGGCGGCGGTGCCGGCGGCGCT
GAGCCAGAAGTCGACGGCCCCGGCGCCCGAGGCG---CCCGAGACGCCGGACGCGCCTGCGGCGGGGACGCCGCCCAAGG
CGTCCGCGGCGCCGAACGTGACGGCGGTGCTGGAGAAGAACGGGCAGTACACCAAGTTCATCCGGCTGATGGCGTCGACG
CAGCAGGACACGCAGCTGAACGCGCAGGCCAACGACTCCGACACGGGCTTCACGGTGTTCGCCCCCACCGACAACGCCTT
CAACAGCCTCAAGCCGGGCACCCTCAACTCGCTCTCGCAGCAGGACCAGGTGACGCTGGTGCAGGCCCACATCATCCCCA
CCTTCTACTCCATGGAGTCCTTCGAGACCGCCAGCAACCCCGTCCGCACCCAGGCCTCCGGCACCGACGGGCCCTGCACC
GTCAACGTCACCGCCACCAGCAACAGCGCCGTCAACGTCTCCACGGGGATCGTCCACACCACCGTCGGCACCGCGCTGCG
CGCCACCAGGCCGCTCGCCGTCTACTCCGTCGACAAGGTGCTGCTGCCCATGGACCTCTTCGGCCCCAAGCCCCCGGCGT
CCGCGCCGCCGGCCCCCGGCAAGAAGCCCTCGTCGGCCAAGGGGGCAGCCAAGGCGCCCTCGGGCGACGACGAGGACGAG
GAAGATGCCCCGCCCGCCGGTGCCGCCACCGCCGTCGGCGCCGGATGGAGGAGCCTGGTCGCCGTGGTGG---CAGCCGC
CACCGCCGCGTGCCTCTTGTAAGAAGAAGA------------------TCATG---GTTCATGAGACCGACAGATCGATG
GAGACTAGCTGCGTGCGTGCATGTTGTGCATGGATTTGGATAGCTTACG---AGTAGTTC--TTGGTGGCTGCTGCTTCT
CTTCTTTCTTTTGTTAAATGTTCAGTTTTGCTGCTCTTTTTCTTCTTCTCTTGT--TATTGAACCGGCGAGAAAGTTTGG
GCTAAAATGTGACGAAATGTTTCACTGTTGAATCAAGCCGTC-----GTTGGGTGATTAAATTCTACTAGCACTGCATTT
TATCTTCAGCTATTTAGCCGTTATTAAGTTATCTTCTAGAGAGACTTACATGTACACTGAATGTCT---------GAATC
GGGTTGTCGGTGGTGAAAACGAACACTTAATACTCCCACGGGGCAACATTTTTCTGTTGTTGGAAAAGTGAAGCCACAAG
TAGATCTTCCATCGATCTGAAAGACTGTAAATGAAAATGAGATTTGGTGCTGCTAT----TTTTTTTAGAGAGAATAAAC
CTTTTTAGGGCAACTTGGTGTCAGTAGTTGTTTTTTCAGAGCAACTTGGTGTCAGTAGCTGACTGTATCGATCTGACTAT
TTATTTATCAATCTAGATACTCTTTTTTTTTTGAGAATATCAATCTAGATAGTCCAGCAGGACTAGACAAACTAAGG---
--------TGGATCAGAAGATGGGCTTGGTCTGGGCCCTGTCTTA-------TGGTGGTTGGATCCTGTGTTTGTTTGTG
GCCAATGAATACGATCACGGGCTAGCTCTCTTCTTACT--TTTTTTGGGGAAATAACGGCTAGCTCAGTCAGGCCTCCTA
GTGTAAATG--------------------------CAGCTACAGTACAGAGCTGT-------------------------
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>chr1B_1
CGATGCAGATCACAGGCCTCCGCTCTTTTTGTGTCTTTTCTTTTTCGGGGAAGCAGCTGGGCTGGGCTGGGCTACACTAT
AGAGCTGCTTTCGCGTCGCCGCTCTCGATCGGCGCACACGCGGACACACATTTCTGTCGGTAGAACGAACGGACGGGGAT
GCTAGCGGAGCACCAAGTCCGTCTCCGTCTGTCAGCCGAATAGAATCTAGCCATGTTCAGTCAGTGCGCTCCCTTTTCTC
CTCCAGGTTTGGCCTCCGCTGGCGGTTTCAGATCGTGCGAACAATTTCGACCGTAGGAAGCGACCACAAACATGGTAGCA
ATAGCAGCAGCGGCAGCAGCAGTCCATGTGAGTGACACAGTGTGATCCATGTGAGAACTGCAACGG--------------
-------CCTCTTTCACCCCGAAGGAGCATTTCTTCACATGCCATTTTGTCTGTCACGGCCATGCTACCAGCAGCCGGCC
CAAAGAAACAAGAACTGCCCG--------------------CCCATCGCGCACCACCACACCTCCAAA-----GCTGCAG
CAGATTGGATTCAGCGCCAGCATCTGAAGGCTATATTTTAAAATTGTT--------------------------------
--TTCCCCTACTTTTTCTAAAGAGAAGATCAACTTGAAGCTCATCTGGCATGTGTACTTCACAATTATT-----------
------------------TTGCCAGAGTCGATCTGCATCTTGAACGATTTCGC------AGCTG---TGATCAGCTGAGG
CTTCTGGTTAGT--------------ATAATCTGAGGATCGCACGGCCAACTTGGCCTTAATCTTCCCCCCAATCCATGC
GCCCCCCACTACCATCGTGTCGGTAGCCATATCAACCG------G---------TCAACACTAACC------ATCCAGAC
TGTAA--------------------------T----CACACAGGCCCAAAACCCTCACCTCCATCCCCATCCCCAGTTAT
ATATCACATCACCTTCCCCTGCTTTCAGCACC---CCACACTCTTGAGCTAAGCTAAGCAAGCCAGCACCTCGATCTAGC
ACCA---CTCCAGCAATGGCGTCGTCCAGGAGAGCGCTCATCCTGCTGGCGGTGGTGCTGGCGGCGGTGCCGGCGGCGCT
GAGCCAGAAGACGACGGCCCCGGCGCCCGAGGCG---CCCGAGACGCCAGACGCGCCGGCGGCGGGGACGACGCCCAAGG
CGGCCGCCGCGCCGAACGTGACGGCGGTGCTGGAGAAGGCCGGGCAGTACACCAAGTTCATCCGGCTGATGGCGTCGACG
CAGCAGGACACGCAGCTGAACGCGCAGGCCAACGACTCCGACACGGGCTTCACGGTGTTCGCCCCCACCGACAACGCCTT
CAACAGCCTCAAGCCGGGCACCCTCAACTCGCTCTCGCAGCAGGACCAGGTGACGCTCGTGCAGGCCCACATCGTCCCCA
CCTTCTACTCCATGGAGTCCTTCGAGACCGCCAGCAACCCCGTCCGCACCCAGGCCTCCGGCACCGACGGGCCCTGCACC
GTCAACGTCACCGCCACCAGCAACAGCGCCGTCAACGTCTCCACCGGGATCGTCCACACCACCGTCGGCACCGCGCTGCG
CGCCACCAGGCCGCTCGCCGTCTACTCCGTCGACAAGGTGCTGCTGCCCATGGACCTCTTCGGCCCCAAGCCGCCGGCCT
CCGCGCCCCCGGCCCCCGGCAAGAAGCCCTCGTCGGCCAAGGGGGCAGCCAAGGCGCCCTCGGGCGACGACGAGGACGAG
GAGGAGGCCCCGCCCGCCGGAGCCGCCGCAGCCGTCGGCGCCGGCTGGAGGAGCCTCGTCGCCGTGGTGGCCGCCGCCGC
CGCCGCCGCGTGCCTCTTGTAAGAAGAAGAAAGTGCGAGA---GAGGATCATG---ATTCGTGAGACCGACAGATCGATG
GAGACTAGCTG----CGTGCATGTTGTGCGTGGATTTGGATAGGTTACT---AGTTCCTGCATTAGTGGCTGCTTCTTCT
CTCTCTTTTTTTGTTAAATGT-CCATTTTTGTTCTCTTTCTTTTCCTCCCCTGT--TGA------------------TGG
GCTAAGATGTGATAAGATGTTCCACTGTTGAATCACGGCGTTAATTTGTTGGATGATTAAATTGCACTGCTATATTTGAT
CTTGGCTAGTTCACTAGCAGC---TAAGTTATCTTCTAAACACTCATCGTACATGTATATGTACAGTTGTACACAGAATC
CGGTTGTCGGTGGTGAAAACGAACACTTAATACTCCCACGGGGCAACATGTTTCTGTTGTTGAAAAAGTGAAGCCACGAG
TAGATCTTCCATCGATCTGAAAGACTGTAAAGGAAAATGAGATTTGATGCTGCTAT----TTTTTTTAGAGAGAAGAAAC
TTTTTTAGGGCAACTTGGTGTCAGTAGTTGTTTTTTTAGAGCAACTTGGTGTCAGTAGCTGACTAGATGGATCTGAGC--
--ATTTATCAATCCAGATACTCCAGCAG-------------------------------GGACTGGACAAACTAAGCCTG
GTTGTATCTGGATCAGAAGATGGGCTTGGTCTGGGCCCTGTCTTA-------TGGTGGTTGGATCCTGTGT------GTG
ACCAATGAATTCTATCACGGGCTAGCTCTCTTATTTTCGTTTCTGCAA-AAATAACGGGCTAGCTCAGCCAGGCCTCCTA
GTGTAAATG--------------------------CAGCTA---------------------------------------
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>SNPs
-------------------------S------------------------------------------------------
-------------------------S-S------------------S------S------------------S-------
--------------S-SS--------------------------------------------------------------
----------------------------------------------S--S--------S--------S------------
-----S------------------------------------SS------------------------------------
-------------------------------------------------------------------S------------
---------------------------------------------------------S----------------------
--S-------------------------------SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
----------------S------------------------------------------S---SS-SSSSSSSSSSSS--
----------------------------------------SS-----------------SSS-SSSS-------------
-S--------S-SSSSSSSSSSSSSS-----S------------------------------------------------
-----------------------S--------------SSSSSS----------------------SSSSSS--------
----------S-------------------------------------------S--S------S---------------
----------------------------------S---------------------------------S---------SS
SS------------------------------------------------S--S--------------------------
----------------------------------SSS--------------S----------------------------
----S---------------------------------------------------------------------------
--------------------------------------S----------------------------------S------
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---------------------------------------------------------------------S----------
---------------------------------------------------------------------------S----
---------------S----------------------------------------------------------------
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------------------------S-------SSSS---SSSS----------SSS------------------------
-------------------------------------------------SSS----------------------------
------------------------------------S-----------------SS------------------------
---S-----------------------------S----------------------------------------------
-----------------------S-SS-----------------------------------------------------
-----------------------------------S----S------S------------S------S------------
-------------------S------------------------------------SSSS----S---------------
--------------------S--S-S----------S-------------------------------------------
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S------------------------------------------S-SSSSSSS----------------------------
----S-------------------S----------S--SS-------S----------------S---------------
---------SSSSSSSSSSSSSSSSSSSSSSSSSS--------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_290
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------------------------------GGCGATTCGAACAATTCCGG------------------------------
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>reverse_1954
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---------------------------------ATGGAGCTCGGAGGATCATG---------------------------
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