>input_sequence_68353
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--------ATGGCCGGCACGGTGGAGGACAGCGGGAAGACGGCGCCGTCGTCTCCGGCCGGGCTCCGCGGCGCCGACCTG
GGCCTGAGGGTGCTGCTGTTCGCCGTCTCGCTGTCGGGGCTCGTCGTGCTGGTCACCGCCAAGCAGACGGAGATGGTGCC
CCTGGTCCTGACGCCGCCGTTCAGATTCGGGCCGGTCCCCGCCCAGTTCAAAGACTCGCCAGCGCTCATGTACGTGAGTC
GATCGTCGTCATGTCATACCTACCTCCTCTCCTACGGGCATTAATAAGCTTCCACGTTGGTACGTACGGTGGATATAGTA
ACATGGACTGTTGATGCTTATGGTGTGCCCTATCTACGTGTGGTTTGCAGTTATCTTCTTGTGGCGCTGTGCATGACGAG
CTTGTATAGCCTTGTGACGGCCGCCAGCTCCGTCAAGTCCATGTCAAGCTCGGCTTCCTGTGCCAAGGGGATCTTCGTCC
TCATTCTGCTTGATGTGGTGAGTATCTTGTACATGAACTACTACCTTGAATGAATTGTTCTCACATGTGT---AGTCAC-
-------------------TAACAATCCTATATATAACCATTAACTATGGCAGGTTTACGCGGGCATCATGGCGTCGGCG
ACGGGCACGGCGGGGGCCGTGGCCTGGGTGGGGCTGAAGGGCAACTCGCACACGCGGTGGAACAAGATCTGCAACATCTA
CGACAAGTTCTGCCGCCACATCGGCAGCGCCACCTGCCTCGGCCTCATCGCTTCCATCCTCCTCGTCCTCCTCGTCGTCC
TCAACGCCTACTCCCTCTACCGGAGAAGCCGCTGA---------------------------------------------
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>chr1D_1_TraesCS1D01G248200
TTGCTCTAGGCGCTCTCGGTCGAGATGTTCTCTTTGTGTCTTCCGCTGATCAAGTTACTAAGGATTTACTGTACTGAACG
AGCAACTAAGGTGATGCTTCGATGGATGATACTGTATTGCCAATTAACATATTGTAGCATGACCAGTTGTGATCACGATT
TGATCCCCACGATCTGTCGTAATCCTGTATACGATCAAGCATCGCT---------GTATTAGTAATACCAATATGGCCGG
ATGGGATAGGCTGCTCGAAACATAAACATA-------TACTATCAGATAGAGCACGTTGACTACCACAAACTAGATAAGC
AACCCCTAACGAGAATCATGAATGCGATAGGCAAGTGAAAGCGATGGTTGCATTTGGAGAACAGCTAGCCACGTCAACAT
TACCATTGCTTGTCTGACTGACCAACCGCAACTGGTGTACAACTTCCATTTTATTATGGTG------TGGATGTCAGCTT
CCCTGCCGATATCACACACAATGTACTCCCTCCGTTTGGAATTACTTGTCATAAAAATGAATGTATCTAACTTGTCATAA
AAATGAATGTATCTACAACTAAAATACATCTAGATACATTTATTTTTTGATGAGTAATTCCGAACGGAGGGAGTAGAAGC
ACAACTGCACAAGCGCTGAATCCCAATCAACGGAGAGCACGTGAACACACGCAAACCCAAACATATTCGCGGTGTGGATG
AGACTGTCAATGCAGCGGACGCGATCGTACTAGGTTG-CGTACAAACCGGGC-TACTTACAAGTCAAAGTCAGACATGCA
-TGCGTACGTACTTACAGCAGCCTGCATGTAAACAAAGGCAGTAAC--------------AGCGTGCATTCT----CACG
TGCCCCACCCCACCCCA-----GCGGCGGCTACAAGCCTATAAAACCACGCACTGCCGTGCCACGACGTCCCGGCGATAG
ATCCATTAATAACTCTGTGCTAGAGCTCATAAACCGCAGACTCCCCCGCCCGCCCAGCTATAGACAAGCGCGCGGCCCGA
CCGAAGGCATGGCCGGCACGGTGGAGGACAGCGGGAAGACGGCGCCGTCGTCTCCGGCCGGGCTCCGCGGCGCCGACCTG
GGCCTGAGGGTGCTGCTGTTCGCCGTCTCGCTGTCGGGGCTCGTCGTGCTGGTCACCGCCAAGCAGACGGAGATGGTGCC
CCTGGTCCTGACGCCGCCGTTCAGATTCGGGCCGGTCCCCGCCCAGTTCAAAGACTCGCCAGCGCTCATGTACGTGAGTC
GATCGTCGTCATGTCATACCTACCTCCTCTCCTACGGGCATTAATAAGCTTCCACGTTGGTACGTACGGTGGATATAGTA
ACATGGACTGTTGATGCTTATGGTGTGCCCTATCTACGTGTGGTTTGCAGTTATCTTCTTGTGGCGCTGTGCATGACGAG
CTTGTATAGCCTTGTGACGGCCGCCAGCTCCGTCAAGTCCATGTCAAGCTCGGCTTCCTGTGCCAAGGGGATCTTCGTCC
TCATTCTGCTTGATGTGGTGAGTATCTTGTACATGAACTACTACCTTGAATGAATTGTTCTCACATGTGT---AGTCAC-
-------------------TAACAATCCTATATATAACCATTAACTATGGCAGGTTTACGCGGGCATCATGGCGTCGGCG
ACGGGCACGGCGGGGGCCGTGGCCTGGGTGGGGCTGAAGGGCAACTCGCACACGCGGTGGAACAAGATCTGCAACATCTA
CGACAAGTTCTGCCGCCACATCGGCAGCGCCACCTGCCTCGGCCTCATCGCTTCCATCCTCCTCGTCCTCCTCGTCGTCC
TCAACGCCTACTCCCTCTACCGGAGAAGCCGCTGATCGAACCAGGCGTCCAGCCCCACTCCTTCGTCCGGCTGGCGGGAC
ATATTTCATGTGCCCTGCATGCCATCCGTCGGCTTTGGTGAGCTTTGCCAGCGGGCGGTCAGTTGTATAAAAGATGCTAC
GTGTTCCTGTGGCTGTGGAGTGCTCTCCGATA----------------TGTTCATGTGCGTTGATGTTTTAAACTTGTTT
GTTTCTACAACACGTTGCTTTGTGACAGTAAGCACGACTTTTATCGGTCAAAATCACGGTTCTGACCTTTGTGGCATAGT
TTGGAACGATTGGACCCGTTCT------AAAAAAACCGAATTTGACCATTTGCTATCGCCATCGTCCGCGACGGTAGGAT
TTAACGTACTGCCACCAGGATCTATGGCGGTAGAAATCTGGTCGCTGTCACAGCACTCGTTGACGTGGACAAGTGGCTAG
CACATTAAAACCTACGCCAGCGTCCTTGGCGGTAGACACCTGAAGCGGGTAAGAGATTGGGGGCTTTGGTGGGCGGTAGG
GCATGTAACCCTATTGCCAACGTCTATGGCGGTAGGGTACTAAATTTAGCTCAAAACGGTACTGAAAGTTCTCGTGCGTT
TCTTTAGGCAGTAGGGCATGTAACCCTATCGCCAGGAAAGTGGCGGTA-GGCCCATGTAACCACTCCAGAGCTCATTTAC
CATTCTGACTAGCACACAAT-------------------------------------------------------TGACA
TCAAATAACAATATAATTCAGTATAACAACAATATAATTGCGTATAACCATAACATTTAAATTCCACCACACAACAATTG
TCCATCACTAAATAATTTGATCATAGAT--------------AGTTCA--------------------------------
----------ACATAGAGTGTTCAACATACCAAGTTCAACGCAACCAAATAGAAGGTTCTCAAATACTACATAGCAAGCA
AGTGTCCATATTACTTTCCTCCCCTCTTGCTTAGACGATCCTCGGCTCTCTTTGTGCGGTCCTCATTTGGTTTGAGACCG
CCTCGAGCACGCTCTCTCTGGAACGGCGATGGACTA-TAAGGATCCTCTA
>chr1A_104
GGATAATATATGTATGCG--------------------------------------------------------------
-----------------------------------------AATTAACATATTGTAGCATGACCAGTTGTGTTCACGATT
TGATCCCCACGATCTGTCGTAATCTTGTACACGATCAAGCGTCGTCGTATTGGTAGTATTAGTAATACCAATACGGCCCG
ATGAGATAGGCTTCTCGAAACATAAACATACAATCCGTACTATCAGATAGAGCACGTTGACTAACACAAACTAGATAAGC
AACCCCTAACGAGAATCATGGATGCGATCGGCGCGTGAAAGCGATGGATGCATTTGGAGAACAGCTAGCCACGTCAACAT
TACCATTGCTTGTCTGACTGAC------CAACTGGTGTACAACTTCCATTTTATTAGGGTCGGTATATGGATGTCACCTT
CCCTACCGGTATCACACACAATGTAGAA----------------------------------------------------
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------GCACAAGTGCTGAATTCCAATTAACGGAGAGCACGTGAACACACCCAAACCCAAACATATTCACGGTGTGGATG
AGGCTGTCAA---------CACGATCATACTAAGTTG-CGTACAAAGCGGGC-TACTTGCAAGTCAAAGTCAGAAGTGCA
-TGCGTACTTG----CAGCAGCCTGCGTGTAAACAATGGCAATGAC--------------ATTGTGCATTCTCACGTACG
TGCCCCACCCCACCCCACCCCGGCGGCGGCTACAAGCCTATAAAACCACGCACTGCCGTGCCTGGGCGTCCCGGCGATCA
ATCCATTGAA---TCTCTTCTAGTGCTCGGAAACCGCAGACTC-----CCCGCCCAGCTATAGACAAGCGCGCGCCCCGA
TCGAAGGGATGGCCGGCACCGTTGAGGACAGCGGGAACACGGCGCCGTCGTCGCCGGCCGGGCTCCGCGGCGCCGACCTG
GCCCTGAGGGTGCTTCTGTTCGCCGTCTCGTTGTCGGGGCTCGTCGTGCTGGTCACCGCCAAGCAGACGGAGATGGTGCC
CCTGGTCCTGACGCCGCCGTTCAGATTCGGGCCGGTGCCCGCCCAGTTCAAAGACTCGCCAGCGCTCATGTACGTGAGTT
GATCGTC---ATGTCATACGTCTCTCCTCTCCTACGGGAATTGATAA-CTTCCGCGTAGGAAC----GGTGCGTATAATA
ACATGGATTGCTGATGCTTATTGTGTGCCCTGTCTACGTGTGGTTTGCAGTTATCTTCTTGTGGCGCTGTGCATGACGAG
CTTGTATAGCCTTCTGACGGCCGCCACCTCGGTCAAGTCCATGTCAAGCTCGGCTTCCTGTGCCAAGGGGATCTTCGTCC
TCATTCTGCTTGATGTGGTCAGTATCTT------------CTGCCTTGAATGATTTGTTCTCACATGTACTGTAGTTGCA
CGCAGGGCACAGCTTGATGTAACAATCCTATCTATAACC-------ATGGCAGGTTTACGCGGGCATCATGGCGTCGGCG
ACGGGCACGGCGGGGGCCGTGGCCTGGGTGGGGCTGAAGGGCAACTCGCACACGCGGTGGAACAAGATCTGCAACATCTA
CGGCAAGTTCTGCCGGCACATCGGCAGCGCCACCTGCCTCGGCCTCATCGCCTCCATCATCCTCGTCCTCCTCGTCGTCC
TCAACGCCTACTCCCTCTACCGGAGAAGCCGCTGATCGAACTAGGCGTCCAGCCCCGCTCCCTCCTCCGGCTGGCGGGAC
AAATTTCATGTGCCGTGCATGTCATCCGTCGGCTTTGGTGAGCTCTGCCGGCCGGCGGTCAGTTGTATAAAAGATGCTAC
GTGTTCCTGTGGCTGTGGAGTGCTCTACGACATGCGTGTGTGCGTGCGTGTACATGTGCGTTGACGTTTATC-CTTGTTT
GTTTCTACAACACGTTGCTTTGTGACAGTAAGCACGACTTTTATCGGCCAAAATCACTGTTGTAACCTTTGTGGCATAGT
TTAGCATGATTTAATTAACCCTGTTTTGAGAAAAATGGATTTAACCTTTTTGCTATCGCCAACGGT------GGTAGGAT
TTAACGTAC---CACCAGGGTCTATGGCACCAGAAACCTAGTCGTCGTCACGCTCATGC-------GGGCAAGTGGTTAG
CACATTAAACCCTAGGCCGGCAT-----ACGGTAGGCACCTAGAGGGGGTAAGTGAATGGGGAATG-GGTGGGCGGTAGG
GCA----ACCCTACCACCAAGGTCCTCA-CGGTACGGTAGTAAATTTAGCCCAAAATGGTACTGAAAGTTTCCGTACGTT
TCTGCAGGCGGAAGGACATGTAACCCTGCCACCAAGAACCTTGATGATGGGCCCATGTAGTCACTCCAGAGCTCATTTAC
CATTTTGTCTAGCACACAAT-------------------------------------------------------T----
---------------------------------------------------AACATTCAAATTTCACCACACAACAATTG
TCCATCACACAACAATTTGATCACAAATAGTTCAACATACCAAGTTCA--------------------------------
----------ACATAGCGTGTTCAACATACAAAGTTGGACACGACCAAATAGAAGGTTCTCAAATACTACATAGCAAGCA
AGTGTCCATATTACTTTCTTTCCCTCTTGCTTAGACAATCCTCAACTCTCTTTGTGCAACCCTCATTTGGTTTTAGGCCG
CCTCGAGCACGCTCTCTCTGGAAAGGCGATGGACTCTTAAGGATCCTCTA
>chr1B_651
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--------------------------------GAGAGCACGTGAACGCGCCAAAACGTAAG--TATTTGCGGTGTGGATG
AGACTG-CAACATAGTGGACGCGATCGTGGTAAGTTGGCGTACAACGCGGGCTTACTTACAAGTCAAAGTCAGACATGCA
TTGCGTACCTG----CAGCAGCCTGTGTGTAAACAAGGGCAAGGGCAGTGACTGGCTGATAGCGTGCATTCTCATGCACG
TGCCCCACCCTGGGCCA-----GCGGCGGCTACAAGCCTATAAAACCACGCACTGCCGTGCCACGACGCCTCGGCGATCA
ATCCGTTGAA---TCTCTGCTAGTGCTCAGAAACCGCAGACTC-----CCCGCCCAGCTATAGACAAGTGCGCGCCCCGA
CCGAAGGCATGGCCGGCACGGTGGAGGACAGCGGGAAGACGGCGCCGTCCTCTCCGGCCTGGCTCCACGGCGCCGACCTG
GGCCTGAGGGTGCTGCTGTTCGCCGTCTCGCTGTCGGGGCTCGTCGTGCTGGTCACCGCCAAGCAGACGGAGATCGTGCC
CTTG--------------------------------------------CAAAGACTCGCCAGCGCTCATGTACGTGAGTC
GATCGTCG---TGACATACGTCTCTCCTCTCCTACGGGAATTAATAAACTTCCACGTTGGTAC----GGTGCATATAAAA
ACATGGACTGCTGATGCTTA-TGTGTACCCTGTCTACGTATGGTTCGCAGTTATCTTCTCGTGGCGCTGTGCATGACGAG
CTTGTATAGCCTTCTGACGGCCGCCAGCTCCGTCAAGTCCATGTCAAGCTCGGCTTCCTGTGCCAAGGGGATCTTCGTCC
TCATTCTGCTTGATGTGGTGAGTATCTT------------CTACCTTGAACGAATTGTTCTCACATGTGC---AGTTGCA
CGCAGGCCACTGGTTGATGTAACGATCCTATGTGTAACC-------ATGGCAGGTTTACGCGGGCATCATGGCGTCGGCG
ACGGGCACGGCGGGGGCCGTGGCCTGGGTGGGGCTGAAGGGGAACTCGCACACGCGGTGGAACAAGATCTGCAACATCTA
CGACAAGTTCTGCCGCCACATCGGCAGCGCCACCTGCCTCGGCCTCGTCGCCTCCATCATCCTCGTCCTCCTCGTCGTCC
TCAACGCCTACTCCCTCTACCGGAGAAGCCGCTGATCGAACCAGGCGTCCAGCCCTGCTCCCTCGTCCGGCTGGCGG-AC
AAATTTCATTTGCCCTGCATGTCATCCGTCGGCTTTGGTGAGCTTTGCGGGCCGGCGGTCAGTTGTATAAAAGATGCTAC
GTGTTCCTGTGGCTGTGGAGTGCTCTCCGATA----------------TGTTCATGTACGTTGATGTTTTAAACTTGTTT
GTTTCTACAACACATTGCTTTGTGACAGTAAGCACGACTTTTATCGGTCAAAATCACGGTTCTGATCTTTGTGGCATAGT
TTGGAACGATTGGACCCATTCT------AAAAAAAACGAATTTGACCATTTGCTATCGCCATCATCCTCAGCGGTAGGAT
TTAACGTACTACCACCAGGATCTATGGCGGTAGAAATATGGTCGTTGTCGCAGCACTCGTTGACGTGGACAAGTAGCTAG
CACATTAAAACTTATGCCAGCGTCCTTGACGGTAGACATCTTGAGCGGGTAAGAGATTGGGGGCTTTTGTGGGCGGTAGG
GCATGTAACCCTATTACCAAGGTCTATGGCGGTAGGGTACTAAATTTAGCCTAAA-CGATACTAAAAGTTCTCGGATGTT
TCTTTAGGCGGTAGGGCATGTAACCCTATCGCCAGGAAAGTGGCGGTA-GGCCCATGTAACCACTCCAGAGCTCATTTAC
CATTCTGACTAGCACACCGTTGACATCAAATAACAATATAATTCAGTATAACAACAATATAATTGCGTATAACCAT----
---------------------------------------------------AACATTCAAATTCCACCATACAACAATTG
TCCATCACAAAATAATTTGATCACAAAT--------------AGTTCAACATACCAAGTTCAATATAGAGTGTTCAACAT
ACCAAGTTCAACATAGAGTGTTCAACATACCAAGTTCAATGCAACCAAATACAAGGTTCTAAAATACTACATAGCAAGCA
AGTGTCCATATTACTTTCTTCCCCTCTTGTTTAGACGATCCTCGGCTCTCTTTGCGTGGTCTTCATTTGGTTTGAGACCG
CCTCGAGCACGCTCTCTCTGGAACGGCGATGGACTA-TAAGGATCCTCTA
>SNPs
SSSSSS--SSS-SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------S--------
------------------------S----S----------S---SS---------------------------S----S-
---S--------S--------------------------------------------------S----------------
--------------------S-------S---SS-------------S--------------------------------
----------------------SSSSSS----------------------------S---S---------------S---
----S---S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-------S-------S-----S----------------------S-----------------------------
----------SSS--S----------------S-------------S---------------------------------
--------S-SSSSS-----------S---------S----S-S------------------------------------
------------------------------------------------------------------------------SS
-------S-SSSS---S------S-----S-------------SSSSS--------------------------S-----
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------------------------------------S-------------------------------------------
--------SS---------S-SS---------------S--------S---------------SSSS----S-----S--
----------S----------S---------S------------------------------------------------
-------------S------------------------------------------------------------------
----------------------------SSSSSSSSSSSS-----------------------------S------SS--
-------------------------------S-------SSSSSSS----------------------------------
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---------------------------------------------------S------S---------------------
--------------------------------------------------------S----S------------------
-S-------------------S---------------------------S--S---------------------------
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-----------------S-----------------S-------------------------------S-SS---------
----------S---------------------------------S-----------------------------------
--------------S-------------S------------SS-------------------------------------
---------------S----S-----------------------------S------------------------S----
---------S----------------------------------------------------------------------
----------------------------------------------------------------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S----------------------
--------S--------------S-S------------------------------------------------------
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------------------S-------------------------------------------------------------
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>forward_640
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------------------------------------------------------------CGAACGGAGGGAGTAGAAGC
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>reverse_1812
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---------------------------------------------------TTCCATCCTCCTCGTCCTCC---------
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>forward_662
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--AACTGCACAAGCGCTGAATC----------------------------------------------------------
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>reverse_2363
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------------------------------------------AAGCGGGTAAGAGATTGGGG------------------
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