>input_sequence_68332
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------------------ATG------GATGATCATCAAGAGGAAGCGCCGGAGAAGGTGAAGCTTTTCGGCATGTGGGC
GAGCCCCTACGTCCTCAAGGTAAAATGGGCTCTCAGCATCAAGGGCGTGGAGTACGAGTACGTGGAGGAGGACCTGAGGA
ACAAGAGCGACGACCTCCTGGAGCACAACCCCGTGCACAAGAAGGTCCCCGTGCTGCTCTACCGCGGCAAACCGGTGGCG
GAGTCCGACGTCATCGTCGAGTTCGTCGACGAGGCGTGGAGCTACCGCGGCGGCCGCATCCTCCCCGACGACCCCCACGA
GCGCGCCATGGCCCGCTTCTGGGTGAGGTTCGTGCACGACAAGGTCAGCGCAGCGGTTCTCTTTCCTCTGTTCCCAAGTT
CGATCCAACTCGGTTAGTTCGTCACAGATGATACGATCTGA--CTGAGCAATATATTACCACATGCAGCTCTCGCCGCCG
ATCTGGAAGTGGTTCACGGCGGCGCCAGGCGAGGGCCAGAAGGCCGCGCTGGGGGCCGCCGTGGAGCAGCTGCAGG----
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--------------------------------------------------------------------------TCCTGG
AGGACTTGCTCGCCCTCGGCGGCAAGGATTTCTTCGCCGGGGAGAGCGTCGGGCTCGTCGACCTGTCGCTCGGCGCGTTG
GCGTACGTGATCCCGATGTACGAGGAGATCATCGGCGTGAGGATGGTCACCGAGGAGAGGTTCCCGTCTCTGTCGGCGTG
GATGGGGCGGTTCTTGGACTCGCCGCCGGTGAAGGATCACCCGCCGCCAGTGGAGAGGCTGAAACCCAGGTACCGAGCCA
TGCGCGAAGCCTTTCTGAACATGGGCTAG---------------------------------------------------
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>chr5A_1_TraesCS5A01G143500
GGCGTCCACCCCCTGCACCACCTCCACCACCGTTTGATCAGACGATACTTAGCAACCCACACCATAGGCTAACTTCTGCA
ATACGGCCCTTGTTGCAATTGTTGCAATACAGGTATATCAGACATAATACAGGTC--TCAAACACTAAACAATGTCAACA
CAACGTTTCCCACGATGCCTCATCGCCCGATTCCATCCGGCCGATCGCTGGGAGTGCCGTCGTCGGCGAGGCCTGCGTCC
ATCGTTGCACCCTGTTCCCTGCCCCCTCCACCTCTCTTCTTCTCGTGTTCGCAACCAACCATGAACTCCGGCCACCACCA
--------------------------------------------CCGTCCTTCGGCCGCTC-------------------
---------------------------------------------------------GCCTCCACTACTACCGTCGGCCG
TGCGGT--GCGCCTGAGCTTGGCACGGCTGCAGCCGACCTCCTCCATGACGTTTTCGACCATCACCGGTCGCCTCCCTGT
TGCAATTGCGACGACCGGGTTGCAAGGGGCGACGGCGAACGATGGCGGCGTTTCTGCAACATCATTTCCATTGCAAATTT
TTTTGGCAAGATCATTTGTGCTGCAAAATTTCCTTCCGCAAGGACACCCATGTTGCAAAAATGTGAAGCCG---AAAAAA
ATCTGCAACATCATCTATATTTCAAATGGTTTCTGCAACATGAGCTCTACTGCAAAGAGCT------CTGCAATACTACA
TTTGTTACAATGCTGAAGACGATGATAGCGTCAGATCTAACGGCTACCGAGGCGGCAGATTTTTTGAAAAGATCTGTCGG
CTGAAGCAGGCCCAAAGAAAAAAAAGGTGATCGGGCATTGCAGGTCTTCTTCATGCTTGAATTGGCTGCGCCTTTCATTA
ACTGTGAAAACGAAGGAAGCAACGTCGATCGTCCAGACTGCTCAGTCCCAAGTCAAGCCACCGGACCTGACTAATCAAAC
ACTGGAGCCATC-AAAATATCTCCGCCACAAGAAAAC-ACTACAAATTCAGCAAACTGGCCAAACGGATCATTAGAT---
TAGAAAGCCATCATCGCCATG------GATGATCATCAAGAGGAAGCGCCGGAGAAGGTGAAGCTTTTCGGCATGTGGGC
GAGCCCCTACGTCCTCAAGGTAAAATGGGCTCTCAGCATCAAGGGCGTGGAGTACGAGTACGTGGAGGAGGACCTGAGGA
ACAAGAGCGACGACCTCCTGGAGCACAACCCCGTGCACAAGAAGGTCCCCGTGCTGCTCTACCGCGGCAAACCGGTGGCG
GAGTCCGACGTCATCGTCGAGTTCGTCGACGAGGCGTGGAGCTACCGCGGCGGCCGCATCCTCCCCGACGACCCCCACGA
GCGCGCCATGGCCCGCTTCTGGGTGAGGTTCGTGCACGACAAGGTCAGCGCAGCGGTTCTCTTTCCTCTGTTCCCAAGTT
CGATCCAACTCGGTTAGTTCGTCACAGATGATACGATCTGA--CTGAGCAATATATTACCACATGCAGCTCTCGCCGCCG
ATCTGGAAGTGGTTCACGGCGGCGCCAGGCGAGGGCCAGAAGGCCGCGCTGGGGGCCGCCGTGGAGCAGCTGCAGG----
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--------------------------------------------------------------------------TCCTGG
AGGACTTGCTCGCCCTCGGCGGCAAGGATTTCTTCGCCGGGGAGAGCGTCGGGCTCGTCGACCTGTCGCTCGGCGCGTTG
GCGTACGTGATCCCGATGTACGAGGAGATCATCGGCGTGAGGATGGTCACCGAGGAGAGGTTCCCGTCTCTGTCGGCGTG
GATGGGGCGGTTCTTGGACTCGCCGCCGGTGAAGGATCACCCGCCGCCAGTGGAGAGGCTGAAACCCAGGTACCGAGCCA
TGCGCGAAGCCTTTCTGAACATGGGCTAGCTCAAAGGCACTGTCTGCGTCTTCAGTTATGATTAAAGTAT--------AA
GAATGCTTGTACTAGCATGATATATACAGTCCTAGCCCGCAAAAAAAAACGATATATATATGGTCCAGTGCATCTTTGTG
TTTACATGGCTTGTACTATGATCATTATTGATATAAATGAGACACGTATTCACCACACAAGAAAATGACTCTTGTTTCCG
ATGAAATTTCAGAAATTCTAATCACCACGGCAGGTACCGAATATACGCATTTCAGGCACAATATTATGGAGACATAAATT
TAAGTCAGATTTCAACAGAAACCAAATTTTTG-ACGCGGCTACTCTGCAACTACATGTATATTGTCATCATTGGAAAAAG
AAATAGCCCTGTGACATTTTTTCTCTAAAAAATACTCGTGTAAGAACATCTACAACTGAAATGTCCTAATTTGGGCCCTA
TAGCGTCCAGTTACCTCTCATTTGGCAACGTCCACAGCCGTCCCCCTTATATCCGAACCTCTAAATCCATGCAACCCCAT
GCGGCGTGATCAAAATAGCACATAGATAATTCAATATGGCATAGATCAGATTGGACATAGCAGAGTTCAATTTATAGCCG
GACATAGCGTGCGAAGTTCACAAAAGATCGGACATAGCATAGCATATTCACAAAAGTTTATCATACGATACATAAATTAG
AGCTAGGGGGTGCCGGATTTCACACTTTCCTCGCTGGTCCCTTCCCCTTGCGGTCTTTGGAGCAGCGGTAGTAGTCTTCG
ACGTACACATCGGTGGACGGAGAGGAATCGTCATCATCGTCAGTGGTTGTGCCGTTGTCGGATGAGGGAGAGGAACGGAT
CCCGGCTTGACATCGGGCCGTGAGGCGCGAGGTGGGCGGCTTTCTCCGCGGCAGCTGCCTTCTCCTTGGCAATCAGACCA
CCTTCGCATTTTGTCGTCGACGACGGGGGGCATCTGTCTCCGCCGACATGAAGGAGTGGAGGATGACGTAGTGGAGAA
>chr5B_2
GCGTCCAGCCCCCTGCACCACCTCCACAACCGTTTGATCAGACGATACTTAGCAACCCACACCATAGGCTAACTTCTGCA
ATACGGCCCTTGTTGCAATTCTTGCAATACATGTCTATCAGACGTAATACAGGTCTATCAGACACTAAACAATGTCAACA
CAACGTTTCCCTCGATACCTCATCGCCTGATTCCATCCGGCCGATCGCTGGGAGAGCCGTCGCCGGCGAGCCCCGCTTCC
ATCATTGCACCCTGTTACCTGCCTCCTCCACCTCTCTTCTTCTCGTCTTTGCAGCCAACCATGAACTCCAGCTGCCACCA
TGGCCGACCTCCTCTTCTCCATTGCTGGGGACCTCCATCGTCCGCCGTCCTTCTGCCGCTCGCCTCCACCATGGCCGTCA
GCCGTTGCGGTGCGTTATTGCAGCTAGGGTCGGTCGTGGTCACCGCCTCAGCCGCCCGCCTCCACTACTACCGTCGGCCG
TGCGGT--GCGCCTGAGCTCGGCACGGCTGCCGCCGACCTCCTCCATGACGTTTTTGACCATCACCGGTCGCCTCCCTGT
TGTAATTGCGACGACCGGGTTGCAAGGGGCGACGGCGAACGACGGCGGCGTTTCTGCAACATCATCTCCATTGCAA-TTT
TTTCGGCAAGATCATTTGTGCTGCAAAATTTCCTTCCACAAGAACACCCATGTTGCAAAAATGTGAAGCCG---AATTCC
TTTTGCAACATCACCCATATTGCAAATGGTTTCTGCAACATGAGCTCTATTGCAAAGAGCTAGATCTCTGCAATACTACA
TTTGTTACAGTGCTGAAGACGGTGATG-CGTCACATCTAACGGCCGTCGAGGCGGCAGATTTTTTGAAAAGATCTGTCGG
CTGAAGCATGGCC-AAAAAAAATACGGTGATCTGGTATTGCAGG---TCTTCATGTTTGAATTGGCTGGGCCTTTCATTA
ACTGTGAAAACGAAGGAAGCAACGTCGATCGTCCAGACTGCTCAGTCGGAAGTCAAGCCACCGGACCTGACTAATCAAAC
ACTGGAGCCATC-AAAATATCTCCGCCACAAGAAAAC-ACTACAAATCCAGCAAACTGGCCAAACGGATCATTAGAATAC
TAGATAGCCATCGCCGCCATG------GATGATCATCAAGAGGAGGGGCCGGAGAAGGTGAAGCTTTTCGGCATGTGGGC
GAGCCCCTACGTGCTCAAGGTGAGATGGGCGCTGAGCATCAAGGGCGTGGAGTACGAGTACGTGGAGGAGGACCTGAGGA
ACAAGAGCAGCGACCTCCTGGAGCACAACCCCGTGCACAAGAAGGTCCCCGTGCTGCTCTACCGCGGCAGACCGGTGGCG
GAGTCCGACGTCATCGTCGAGTTCGTTGATGAGGCGTGGAGCCACCGCGGCGGCCGCATCCTCCCTGACGACCCCTACCA
GCGCGCCATGGCCCGCTTCTGGGTGAGGTTCGTGCATGACAAGGTCAGCGCAGCGGTTTTCTT----CTGTTCCCAAGTT
CGATCCAAGTCGGTTAGTTCGTCGCAGACGATATGATCCGACTCTGAGCAATATATTG---CATGCAGCTCTCGCCGCCG
ATCTGGAAGTGGTTCACGGCGGCGCCAGGCGAGGGGCAGGAGGCCGCGCTGGGGGCCGCCGTGGAGCAGCTGCAGG----
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--------------------------------------------------------------------------TCCTGG
AGGACTTGCTCGCCGTCGGCGGCAAGGAGTTCTTCGCCGGGGAGAGCGTCGGGCTCGTCGACCTGTCGCTGGGCGCGATG
GCATACGTGGTCCCGATGTACGAGGAGATCATCGGCGTGAGGCTGGTCACCGAGGAGAGGTTCCCGTCTCTGTCGGCGTG
GATGGGCCGATTCTTGGACTCGCCGCCGGTGAAGGATCACCCGCCGCCAGTGGAGAGGCTGAAACCCAGGTACCGAGCCA
TGCGTGAAGCCTTTCTGAACATGGGCTAGATCAAAGCCACTGTCTGCGTCTTTCAGTTAAA-------AT--------AA
GATTGCTTGTACTAGCATGATATATGCAGTCCTACCCCGCAAAAAAAAG----ATATATACAGTCCAGTGCATCTT----
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>chr5D_16
---------------CACCACCTTCACCACCGTTTGATCAGACGATACCTAGCAACCTACACCGTAGGCTAACTTCTGCA
ATACGGCCCTTGTTGCAATTCTTGCAATACAGGTCTATCAGACATAATACAGGTGTATCAAACAGTAAACAATGTCAACA
CTACGTTTCCCACGATACCTCGTCGCCCGATTCCATCCAGCCGATCGCTGGGAGCGTCGTCGCCGGCAAGCCCCTCGTCC
ATCGTTGCACCCTGTGCCCTGCCTCCTCCACCTCTCTTCTTCTCGTGTTCGCAGCCAACCATGAACTCCAGCTGCCACCA
TGGCTGACCTCCTCTTCTCCAT---TGGGGACCTCCGCCGTCCGCCGTCCTTCTGCCGCTCGCCTCCACCATGGCCGTCA
GCCGTTGTGGTGCGTCGTTGCAGCTAGGGTGGGTTGCGATCACCGTCCCAGCCGCCCG--TCCACCACTACCACCGGCCG
TGTGGTGTGCGCCTGAGCTCAGTATGGCTGCCACGGACCTCCTCCATGACGTTTTCGACCATCACCGGTCACCTCCCTGT
TGTAATTGTGACGACGGGGTTGCAAGGGGCGACGGCGAATGGCGG-GGCGTTTCTGCAACATCATCTCCATTGCAAAAAA
A-TTGGCAAGATTATTTGTGTTGCAAAATTTTCTTCCGCGAGAACACCTACGTTACAAAAATGTGAAGCCGGAAAAAAAA
ATCTGCAATATCACCTATATTGCAAATGGTTTCTGCAACATGAGCTCTATTGCGAAGAGCT------CTGCAATACTACA
TTTGTTACAATGCTGAAGACGATGATGGCGTCAGATCTAATGGTCGTCGAGGCGGCAGAATTTTTGAAAAGATCTGTCGG
CTGA--------------------------TCGGGCATTGCAGG---TCTTCATGTTTGAATTGGCTGGGCCTTTCATTA
ACTGTGAAAACGAAGGAAGCAACGTCGATCGTCCAGACTGCTCAGTCGGAAGTCAAGCCACCGGACCTGACTAATCAAAC
ACTGGAGCCATAAAAAATATCTCCGCCACAAGAAAACCACTACAAATTCAGCAAACTGACCAAACGGATCATTAGAT---
TAGAAAGCCATCGCCGCCATGGATGATGATGATCATCAAGAGGAGGCGCCGGAGCAGGTGAAGCTTTTTGGCATGTGGGC
AAGCCCCTACGTCCTCAAGGTGAGATGGGCGCTGAGCATCAAGGGCGTGGAGTACGAGTACGTGGAGGAGGACCTGAGGA
ACAAGAGCCACGACCTCCTGGAGCACAACCACGTGCACAAGAAAGTCCCCGTGCTGCTCTACCGCGGCATACCGGTGGCG
GAATCCGACGTCATCGTCGAGTTCGTCGACGAGGCGTGGAGCCACCGCGGCGGCCGCATCCTCCCCGACGACCCCCACGA
GCGCGCCATGGCCCGCTTCTGGGTGAGGTTCGTGCACGACAAGGTCAGCGCAGCGGTTCTCTTTCCTCCGTTCCAAGTTT
GGTTTTGTGTAGCTCAAGCT-----ACATGATACCCTTTAT--CTTAGCCATCCATTTTTGCATCATGATCCGTACAGGC
ACATTTGTCATTTTTGTTTCTCTCAAACGAGACAACGTATAAACTTCAAACTTTACAGAACAACAAAACATTCTAATTAC
TATGTGGGAAAAAACTTTCAGATTTTTTCATGCATTTTAAATGCTAAAAATTATTTTTTTAATCAAAAAAATCCTCATTT
TGTATATTTATGTTGGTCCAAAAAATCTGAAAGTTTTTTCACACATTGAAGTTGTAAGTTTTGTTTGACCTGGAAAGTTT
GAAGTCTACATATTCTTTCATTCGAGAGAAACAAAAAAGAAAAATCTTCTTGCTGTAAGTTAGTTGAAGAGTATGAATCT
CAAAGCAACTTTGAAGGACTGAAGATAAAAGGTTACATGTAGCCTGAGCTACAAAGGAACTTTACCCAGATGATTCCTGG
AGGAGTTGATCGCCGTCGGCGGCAAGGATTTCTTTGCCGGGGAGAGCGTCGAGCTCGTGGATCTGTCGCTCGGTGCGTTG
GCGTACGTGGTCCCGATGTACGAGGAGATCATCGGCGTGAGGCTGGTCACCGAGGAGAGGTTCCCGTCTCTGTCAGCGTG
GATGGGGCGATTCTTGGACTCGCCGCCGGTGAAGGATCACCCGCCGCTAGTGGAGAGGCTGAAACCCAGGTACCGAGCCA
TGCGTGAAGCCTTTCTGAACATGGGCTAGATCAAAGCCACTGTCTGCGTTTAAGTGATTGCTTGTACTATGTCAAAAAAA
AATTGCTTGTACTAGTACGATATATACAGTCCTACCC--------ACAA----AAAAAAACGGTCCAGTGCATCCTTGTA
TTTACATGGCTTGTACTATGATCTTTAC-GATATAAATAAGACACATATTTACCATAAAAAATGACTCA-----TTTTCT
ATGAAATTTCAGAAATTCCAGTCATCACAGTAGCTATCAAATATACGCATTTCAAGCAAAATATTATGGTGACATAAATT
CAAGTCAGATTTCAACAGAAACCAAATTTTCTAACGCGGACACTCTGCAGCTACATGTGTATTG---TCATTGGAAAAAG
AAAACCCATGTAACA--TTTTTTTCTCAGAAATACTCGTGTAAGAACATCTACAACCACAATGTTCTAATTTGAGCCCTA
TAGCGTCTAGTCACCTCTCATTTGGCCAGGCCATCCTT-------CTTATATCAAAACCTCTAAATCCATGCAACCCCAG
ATCAGG-------------------------------------------------CATAGCAATGTTCAATTTACAGCCG
GACATAGCATATGAAGTTCATAAAAGATCGGACATAGCATAGCATATTCACAAAAGTTTAGCCTACGATACATAAATTAA
AGGTAGGGCG---------TCACACTTTCCTCGCTGGTCCCTTCCCCTTGCAGTGTTCGGAGCAGCGGTATTAGTCTTCG
TCAGC---------GGACAGAGAGGAATCGTCATCGCCGTCGGTGGTTGT------------------------------
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>SNPs
-SSSS-SS------------------------------------------------------------------------
--------------------S-------------S---------------------------------------------
----------------S-------------------------------------S-------S-------S--S------
-----------------------S-----------------------------S---------------S--SS------
-----------------------------------------------------S--------------------------
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-------------------S-----------S------------------------------------------------
--S---------------------------------------S----------------------S--------------
------------------------------------------S-------------------------------------
-------------S-------S---------------------------S------------------------------
--------------------------S-----------------SSS---------------------------------
--------S-S--S--S-----S-S-------------------SSS--------S------------S-----------
-----------------------------------------------SS-------------------------------
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------------SS------------------------------S-----------------------------------
---------------------S-S------S--S----------------------------------------------
--------S------------------------------------------------------------S----------
------------------------------------------S-------------------------------------
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--------S--------------S---------------------------------SSSS-------------------
---------------------------------------S----------------------------------------
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--------------S-----------------------------------------------------------------
---------S--------------------------------S-------------------------------------
---------S----------------------------------------------------------------------
----S------------------------S------S---------------SSSS-S-----SS-S-------------
--S-------------------------------S--------------SSSS-------S------------------S
-----------------------S---SS---------S------S----S----S-S--S-SS-SSSSSSSSS---S-S
------------------S-S---S---S-S--S--S-S---------------S---S----------S----------
S-----------------------------SS-------SS--------S--------S-----SSS-------------
---SSS-SSSSSSSSSS-----S---S-S---------------------------SSS-----S--------S------
-------S---S--------------S-S-S-SS-SSSSSSSSSS--------SS------------------------S
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS----------S-----
--------S-SS--------S---------------------------------------S-S----------------S
--S-----S-SSSSSSSSS--------------------------------S--S--S------------S---------
S-SSSSSSSSSSSS----S----------------SS----S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_889
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---------------------------------------------------------------------AGATCTGTCGG
CTGAAGCAG-----------------------------------------------------------------------
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>reverse_3018
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---------------------------------------------------------TGGAGCAGCGGTAGTAGTCT---
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