>input_sequence_68309
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-------------------------------------------------------------------------------A
TGGGAAGCGAGTGCAAGGGCCACCAGCCGCAGGACGACGGCGGCGTGGCGCCGTTCGTGGCGAAGACGTTTCACATGGTC
AGCGACCCGGCCACGGACGCCGTGGTGTGCTGGGGCGGCGCCAGCAACACGTTCCTCGTCCTCGACCCCGCCGCCTTCTC
CGACTTCCTCCTCCCCTCCTACTTCAAGCACCGCAACTTCGCCAGCTTCGTCCGGCAGCTCAACACCTACGTACGT----
----ACGCACGCACGCGCTCTCTAGTACAGATTCATTATATGT--ATGCCTACTCTGCTCTGCTCAGGTTGT---TGTG-
-------GCTGTGCTCATACCTGCTCTGCTCGCCTTTGCTGCTTTGATCTCAGGGTTTTCGCAAGGTTGACCCGGACGTG
TGGGAGTTCGCGCACGAGTCGTTCCTGCGCGGCCAGGCGAAGCTGCTGCCGCTGATCGTGCGCAAGAAGAAGAGAGCCGG
CGCCGGCGCGGCCGGGAGGGAGCTGTGCGTGGACGAAGAGGAGGTGCGGGGAACGATCCAGGCGGTGCAGAGGCTGCGGG
ACGAGCGGAGGGGCATGGAGGAGGAGCTGCAGGCCATGGACCGCAGGCTCTGTGCGGCGGAGAACCGGCCGGGCCAGATG
ATGGCCTTCCTCGGCAAGCTCGCGGACGACCCGGGCGTGGTGCTTCGCGCCATGGTCGCCAAGAAGGAGGAGCTGGCTGC
GGCCGGTGCCGGTGGCAAGGATTCAAGCCCAGATAAGAGGCGGCGGATCGGGGCCGACGC--------------------
CGGATCAGGCGGCCCAGAGCAGGGCCGTGCCGTTCCCCTTCTGTAA----------------------------------
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>chr3B_1_TraesCS3B01G314600
GGGGTGCCGGCGCATGCGTCCATGGCGAAATTCGCCGGCGCCGGCGCGCGCGGGTCGTAGGAGGCGGAGAGGGAAGAGTG
CGACGCGAGCGCTCGAGTGTGCCGCGCGCGAAAGCGGGCGCACCAAATACACCGCGCGGGATAGCGTATCCGACCGCGCG
TCCAATTCGTTATAGCGCGCATGATTTTTGCACGCCCGCTGGAGCCACCCGCCGCGTTGCGCGCGCGTTAAAACGGCCTA
ATTTGCGGCGCGGCGCTAGTTTAGCGCGGCTGTTGGAGATGCTCTAAAGGCAAAATCCACAGCAAAGCGGAAGACCAAAC
GTTGAGAGCGTGTCCATTTTAGGCCTGTTCCACCCTGCACGTTCCAACATGCTGCCAAGCTGCTCCCAGGTTTCACCTCT
GCTGAAAGCTCAGTACAGTTACCTGTTTTTTTTAAACAAATGTACAGTTACCTGTTACAGCTACGCCCAACGCATTTGAG
CAGCTTCCGCTCTGGTC-----ATCTCAACCATGCACCATTTCCCCGGCCAGATATCTCCGGTAAATATCGTAGCACTGC
ACGCTGAAAAGGAAAAAAGCCGAGCGCTTTTGAGCGGAGATGCCATGGCGAGGAG-GAGACAGCACAACGCTTTACACGG
GGGCGCCACACGTGTCCCGTATGCGACAAACACCGAATCCTCACAAAATCTCGCACTACCGGTGCGGTGCCACGTCACCG
AGCAAATCGGATGCCTCCATTTGTTACCGCCCATGGCCTGAACCCCAACACCCCATCACCTATTCCACGCCCGAGCCCGA
GG-CCGACAAGCGG-CAAGGTCGGCACGCGCGGAGCGGGGCAGATATATATTTTCTCACCT---ATAAAGCGTCACCGCC
CGGAACCGAAATATCTGCGCGCGC----ACACACGTTG---G--TAGGAAGGAGTGACTCCCCACAGAGAACAACAAGCC
CA---------------CACCGAGCAGAGCAGGAACAGCGAGCGGCTTCCTTATCCGGTT-GTAGACTCTTCGT---CCA
TGGGAAGCGAGTGCAAGGGCCACCAGCCGCAGGACGACGGCGGCGTGGCGCCGTTCGTGGCGAAGACGTTTCACATGGTC
AGCGACCCGGCCACGGACGCCGTGGTGTGCTGGGGCGGCGCCAGCAACACGTTCCTCGTCCTCGACCCCGCCGCCTTCTC
CGACTTCCTCCTCCCCTCCTACTTCAAGCACCGCAACTTCGCCAGCTTCGTCCGGCAGCTCAACACCTACGTACGT----
----ACGCACGCACGCGCTCTCTAGTACAGATTCATTATATGT--ATGCCTACTCTGCTCTGCTCAGGTTGT---TGTG-
-------GCTGTGCTCATACCTGCTCTGCTCGCCTTTGCTGCTTTGATCTCAGGGTTTTCGCAAGGTTGACCCGGACGTG
TGGGAGTTCGCGCACGAGTCGTTCCTGCGCGGCCAGGCGAAGCTGCTGCCGCTGATCGTGCGCAAGAAGAAGAGAGCCGG
CGCCGGCGCGGCCGGGAGGGAGCTGTGCGTGGACGAAGAGGAGGTGCGGGGAACGATCCAGGCGGTGCAGAGGCTGCGGG
ACGAGCGGAGGGGCATGGAGGAGGAGCTGCAGGCCATGGACCGCAGGCTCTGTGCGGCGGAGAACCGGCCGGGCCAGATG
ATGGCCTTCCTCGGCAAGCTCGCGGACGACCCGGGCGTGGTGCTTCGCGCCATGGTCGCCAAGAAGGAGGAGCTGGCTGC
GGCCGGTGCCGGTGGCAAGGATTCAAGCCCAGATAAGAGGCGGCGGATCGGGGCCGACGC--------------------
CGGATCAGGCGGCCCAGAGCAGGGCCGTGCCGTTCCCCTTCTGTAATCTGGGACAGGTGTTCTACTGATAGACCTTGGGA
GTCGAGAGTTGATAGATAGG-----TGTACACGTGTGATGTTTTGGTGTT------------TATGTATGTACAGTGTAC
TT--CCCCTCGGCATAGTTGCTAATATGACCGTCTGATTGGCGCCATAGTAGTCACTCCACCCACGAGTTTTAGCATTTA
GAAATGTGTTTTTCTAAAGTGGGTTCATATCTACCCCGGTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
CCTATACATCTGCTCGCCGGACCCTCATATGTTGTGCCGCACATCTACATACCTCAAATTCCGTTCCTCAAATCC-----
----ATGCATGTCGATCATATAATACAAATTGTGTGAATTCAAAAGTTTAAAACAAAGCAAAGCAAATCATAGTTGAACA
ACCTAGACATGTCAAAATGAAATCAATGTCCGAGCGTGATGGATGGCCTCATATCACTGACCGGGCACCTACTCCGAGCA
GAATACGTCGTGTTTCAGGCGGAATACGTCGTGCTCCAGACGGAATGCGTCATGCCCATGCTCATTCACGCCCGAACGAG
CTACCGCGAGTCACATACATAAACCACTAGCATCCGCGTGGGCGGAAAGCTCTCCGAAATGGCC-AGTCGCCTTGAATTC
TCCTCTGTCCCAATGGGGTTGGACAGCGTAATCCA
>chr3D_292
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---------------------------------------------------AAAATCCACAGCAAAGCGGAAGGCCAAAC
GTTGAGAGCGTGTACATTTTAGGCCTGTTCCACCCTGCAGGTTTCAACATGCTGCCAAGCTGCTCCCACTTTTCACCTCT
GCTGAAAGCTCAGT-----------------------------ACAGTTACCTGTTACAGCTACGCCCAACGCATTTGAG
CAGCATCCGTCCCGGTGATCTGATCTCAACCATGCACCATTTCCCCGGCCAGATATCTCCGGTAAATATCGTAGCACTGC
ACGCTGAAAAGGAAAAG-GCCGAGCGCTTTTGAGCGGAGATGCCATGACGAGGAG-GAGACAGCACAACGCTTTACACGG
GGGCGCCACACGTGTCCCGTATGCGACAAACACCGAATCCTCACAAAATCTCGCACTACCGGTGCGGGGACACATCACCG
AGCAAATCGGATGCCTCCATTTGTTACCGCCCATGGCTTGAACCCCAACACCCCATCACCTGTTCCACGCCCGAGCCCGA
GG-CCGACAAGCGG-CAAGGTCGGCACGCGCGGGGTGAGGCAGATATGTACTTTCTCACCTAGTATAAAGCGTCACCGCC
CGGAAGCGAAATATCTGCGCGCGCGCACACACACGTTG---GTATAGGAAGGAGTGACTCCCCACAGAGAACAACAAGCC
CA---------------CA------------------GCGAGCGGCTTCCTTATCCGGTT-GCGGCCTCTTCGT---CCA
TGGGAAGCGAGTGCAAGGGCCACCAGCCGCAGGACGACGGCGGCGTGGCGCCGTTCGTGGCCAAGACGTTCCACATGGTG
AGCGACCCGGCCACGGACGCCGTCGTGTGCTGGGGCGGCGCCAGCAACACGTTCCTCGTCCTCGACCCCGCCGCCTTCTC
CGACTTCCTCCTCCCCTCCTACTTCAAGCACCGCAACTTCGCCAGCTTCGTCCGCCAGCTCAACACCTACGTACGTACCC
ACGCACGCACGCACGCGCTCTCTAGTACAGATTCATTATATGTGTATGCCTACTCTGCTCCGGTCAGCGGCTAGCTCTCG
AGTGTTTGTTGTGCTCATACCTGCTC-----GCCGTTGCTGCTTTGGTCTCAGGGTTTTCGCAAGGTTGACCCGGACGTG
TGGGAGTTCGCGCACGAGTCGTTCCTGCGCGGCCAGGCGAAGCTGCTGCCGCTGATCGTGCGCAAGAAGAAGAGAGCCGG
CGCCGGCGCGGCGGGGAGGGAGCTGTGCGAGGAGGAAGAGGAGGTGCGGGGAACGATCCAGGCGGTGCAGAGGCTGCGGG
ACGAGCGGAGGGGCATGGAGGAGGAGCTGCAGGCCATGGACCGCAGGCTCCGCGCGGCGGAGAACCGGCCGGGCCAGATG
ATGGCCTTCCTCGGCAAGCTCGCGGACGACCCGGGCGTGGTGCTACGCGCCATGGTCGCCAAGAAGGAGGAGCTGGCTGC
GGCCGGCGCCGGTGGCAAGTATTCAAGCCCGGATAAGAGGAGGCGGATCGGGGCCGACGCCGGACGCGGAGCTGACGCTG
CGGATCAGGCGGCCCAGAGCAGGGCCGTGCCGTTCCCCTTATCTAATCTGGGACAGGTGTTCTACTGATAGACCTTGGGA
GCCGAGAGTTGATAGATAGG-----TGTACACGTGTGATGTTTTGGTGTTTATGTATGTTTATATGTATGTACAGTGTAC
TT--CCCCTCGGCATAGTTGCTATC-TGACCGTCTAATTGCCGCCATAGTAGTCACTCCACCCACGAGTTTTAGCATTTA
GAAATGTATTTTT-TAAAGTGGGTTCATATATACC---------------------------------------------
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>chr3A_390
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---------------------------------------------------------------------GTTTCACCTCT
GCTGAAAGCTCAGT-----------------------------ACAGTTACCTGTTACAGGTAGCACCGATGTATGCTTA
ACCTGTTACAGGTAGCACAGATA----------------------------------TCCTGTAAATATCGTAGCACTGC
ATGCTGAAAAGGAAAAAAGGCGAGCGCTTTTGAACGGAGATGCCATGACGATAGGAGAGGCGGCACAACGCTTTCCACGC
GGGCGCCACACGTGTCCCGTATGCGACAAACACCGAATCCTCGCAAAATCTCGCACCACCGGTGCGGTGCCACATCACCG
CGCAAAGCGGGTGCCTCCATTTGTTACCGCCCATGGCGTGAACCCAAGCACCCAAAAATGTTACCGCCCCATCATCTGTC
AAACCGACAAGCGGACAAGGTCGGCACGCGCAGAG----GCAGATATATACTTCTCTCT----TATAAAGCATCACCGCT
CGGAGGCGAAATATCTGCGCACAC----ACACGCGTTGGTAG--TAGGAAGGAGTGACTCCCCACAGAGAACAAGCCCAC
ACCGACCAGAGCGGGAGCA------------------GCGAGCGGCTTCCTTATCCGGTTTGTAGCCTCTTCGTTGTCCA
TGGGAAGCGAGTGCAAGGGCCACCAGCCGCAGGACGACGGCGGCGTGGCGCCGTTCGTGGCCAAGACGTTCCACATGGTG
AGCGACCCGGCCACGGACGCCGTGGTGTGCTGGGGCGGCGCCAGCAACACGTTCCTCGTCCTCGACCCCGCCGCCTTCTC
CGACTTCCTCCTCCCCTCCTACTTCAAGCACCGCAACTTCGCCAGCTTCGTCCGCCAGCTCAACACCTACGTACGTAT--
----------GCACGCGCTCTTTGTATGAATA------------------TACTCTGCTCCAATCAGCTCTCGACTGTG-
-------GTTGTGCTCATACCTGCTC-----CCTGTTGCTGCTTTGATCTCAGGGTTTTCGCAAGGTTGACCCGGACGTG
TGGGAGTTCGCGCACGAGTCGTTCCTGCGCGGCCAGGCCAAGCTGCTGCCGCTGATCGTGCGCAAGAAGAAGAGGGCCG-
--------------GGAGGGAGCTGTGCGAGGAGGAGGAGGAGGTGCGGGGGACGATCCAGGCGGTGCAGAGGCTGCGGG
ACGAGCGGAGGGGCATGGAGGAGGAGCTGCAGGACATGGACCGCAGGCTCTGTGCGGCGGAGAACCGGCCGGGCCAGATG
ATGGCCTTCCTCGGCAAGCTCGCCGACGACCCGGGCGTGGTGCTGCGCGCCATGGTCGCCAAGAAGGAGGAGCTGGCTGC
AGCCGGTGCCGGTGGCAAGGATTCAAGCCCGGATAAGAGGCGGCGGATCGGGGCCGACGCCGGACGCGGAGCTGACGCTG
CGGATCAGGCGGCCCAGAGCAGGGCCGTGCCGTTCCCCTTCTCTAATCTGGGACAGGTGTTCTACTGATAGACCTTGGGA
GTCGAGAGTTCATAGATAGGTGTACTGTACACGTGTGATGTTTTGGTGTTTATGTATGT------------ACAGTGTAC
TTTCCCCCTCGGCATAGTTGCTATC-TGACCGTCTGATTGCCGCCATAGTAGTCACTCCACCCATGAGTTTTAGCATTTA
AAAATGTGTTTTT-TAAAGTGGCCTCATATGTATCTGAGTTCATCGATGCATTTTCCCTCCACCCACCCCTCACCTCTCA
TCTCTCATGCTCAGCTCATATTTAAGAGCATGCCGGAAATCTGCC-----------------------------------
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------------------------------------------------------------------------------CC
CCTATACATGTGCCTGCCGGCCCCTCATATGTTGCGCCGCACATCTACATGCCTCAAATTTCGTTCCTCAAATCCATGCA
ATTCATGCACGTCGATCATACAATACAAATTGTGTGAATTCAAAAGTTTAAAACAAAGCAAAGCAAATCATAGTTGAACA
AACCAGACATGCCAAAATGAAATCAATGTTCGAGCGTGACGGATGGCCTCAGATCACTGACCTGGCACCTGCTCCGAGCT
---------------------GAATACGTCGTGCTCCAGGCGGAATGCGTCATGCCCATGCTCACTCACGCCCGAACGAG
TTGCGGCGAGTCACATACATCTATCGTTGGCATCTGCGTGGGTGAAAAGCTCTCCAAAATGGCCTAGTCGCCTCGAATTC
TCCTCTGGCCCAATGAGGTCGGACAATTTAATCC-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------S------
-------------S-------------------------S---S------------------------S-----------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
----S----SS-----S---------------------------------------------------------------
-----------------------------------------------S--------------------------------
-------------------------------------------------------------------------S------
-------------------------------------S-----------------------S------------------
-----------------------------------S-S------------S-----------------------------
-----S--------------------------------------------------------------------------
-------------------SSSSSSSSSSSSSSSSSS----------------------------S--------------
-------------------------------------------------------------S--------S--------S
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------------------------------------------------------S-------------------------
------------------------------------------------------------S-S----S-SS---------
--------S-----------------SSSSS---S---------------------------------------------
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------------S----------------S---S----------------------------------------------
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--------------------------------------------S-----------------------------------
------------------------------S-------------------------------------------------
------------------------------------------S-------------------------------------
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-----------------------SSS--------------S---------------------------------------
-------------S----------------S----SSS-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
---------S---SS-----S-------------S---------------S---------S-------------------
---------S----------S-----------------------------------------------------------
-S-S-------S-----------------S---------S-----------S----------S-------S--------S
SSSSSSSSSSSSSSSSSSSSS------------------S------------------------S---------------
S-S-S---------------SS-S-SS-S-----S-------S-S----------S-----------------S------
-------S-------S---S-----SSS------S
>forward_314
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------------------------------------------------------ATCCACAGCAAAGCGGAAGA------
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>reverse_2025
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------------------------TATGACCGTCTGATTGGCGC------------------------------------
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-----------------------------------
