>input_sequence_68296
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-------------------ATGGCGGACACCGGCGGTGCCCCG------------CCGATCACCGTGAAGCTCCTGGTGG
ACACGAGGCCGCCGCGGCCGCGCGTGGTGTTCGCGGAGGCCGGCAAGGACGCCGTCGACTTCCTCTTCTCCCTCCTCACC
CTGCCGGCCGGCACGGCCGTGAGGCTGCTGGGGAAGGAGTCCATGTCCATGGTGGGTAGCGTCGGCAACCTCTACGCCAG
CGTGGAGCGGCTCGAGGGCAGCTACCTGCGGCCCGGCTTCGCCAAGGACGCGCTCATCCGCCCCGCCACGCAGGCCAGCC
CGCTCCTCCGCCTGCCCGCGCCGCCGGCCCCGGCCCCGAGGAGCTTCTTCACCTGCGGCGCCATCAACCA---CTTCAAC
TACCAAGGCTGCCGCGGGTACGTGTCCGACGCCAGGGGCGCCCGGTGCCCGGCCTGCGGGAACGAGATGGCGACCGTGTC
CCAGTACGTGCCGCCGCCGCCG---------GCCA------AGCCGGAGGAGAGCGCAAACGCAGCGACGACGGGGTTCG
TGCAGGGGGCCGTGACGTACACGGTGACGGACGACCTGGCCGTCGCGCCCATGTCGGCCATCTCCAGCATCGCGCGGCTC
GGCGC------------------CGTCGCCGCCGTCGGGGGCCTCGGCGCGCTCCAGGAGAGGACCGTGGAGCTCGGGTA
CAAGGAGGGCCTGGAGATCCTCAAGGCCTCGCTGCGGTCCAAGACTGTCCTCACAGACGTCTTCCTCGGCACCGGCGGCA
AGAAGCCTCCTCCGTCGTCCAAGAACAACGGCAA------CGGCGGCACAAGATACGAGTGTCTCACCTGGCGTGTTTGA
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>chr6B_1_TraesCS6B01G014900
CAGATTTCTGTTCGTTTCTTTTTCGGCTTTGTTTGGTTCTTTCTCGTTTTTCATAGTCAACATTTTTCTATACACATTTA
CCTTATTTCAAATACTTGATTAATATTTTCTAAATACATGGTCAATATATTTTTATAAACATTTAACATTTTTCACATGC
TTGATTAATATTTTTAAAATATTTTCTACCATATTTTTCAAATGCTTGTGGGCTTTTTTAAATACATGTTCAGCTTTACA
CACACAGTATATGTTTTTTGTATACATTTTTTATATACATGAGAAACATTTTCCTTATACTTTTTTTTAGAAAAGGAGGA
TGACCCCCGGCCTCTGCATCTGGGAGATGCATACGGCCACTTTATTGATTATTCACGATGACCTTACAAAGTATTACAAT
AATATACCTGAGTATCCACGATAGGGTATGTATCTGAGTTGGTAAGTGTGTTGAGAAAAAACCTGGAGGTATTCGGTTCG
AATCTCAGTTGGCGCGATATATTTCTTAACCTAAAAAATGGAAAAAAAAATGTAAACGGGCCGAGCCCAGGACAAAACCT
ATAATAACCAACTCCTATACGGAGTATACATACAAAATGGATACGATGTGTGAAATGTCTATATTATCTTTTATACGTTT
TGTTGGACCGTTCTGACGGATATTTCAGTGGACACGTCAATTATCTCTCGCATTGCAATGCACGAGTATATGTGCTACTA
GTTAAAATATCTCTAAATTTACTGAGCACTCATATC-------TTTTTTACAAAGAAAGTCATTGATGCGCTAAGAAACG
CACTACAATATGTTGGAGAATATCAACTCACCATGGGTTCTCACCGT---------------------------------
-----GAAAGCAGAGGATACGATTCCCTTGTTGCCCGACAGACAATGTTGGGAGGCAAAATCTAGTGGATGCTGCGTC--
-----CGTCCGTGATATAGATT-------CAGACCATTCCATTCCCTCCAAGAAATCAACCTAGGGAGAGTGGAAGTTGT
TGCATCGAGGCGCTCCAAGATGGCGGACACCGGCGGTGCCCCG------------CCGATCACCGTGAAGCTCCTGGTGG
ACACGAGGCCGCCGCGGCCGCGCGTGGTGTTCGCGGAGGCCGGCAAGGACGCCGTCGACTTCCTCTTCTCCCTCCTCACC
CTGCCGGCCGGCACGGCCGTGAGGCTGCTGGGGAAGGAGTCCATGTCCATGGTGGGTAGCGTCGGCAACCTCTACGCCAG
CGTGGAGCGGCTCGAGGGCAGCTACCTGCGGCCCGGCTTCGCCAAGGACGCGCTCATCCGCCCCGCCACGCAGGCCAGCC
CGCTCCTCCGCCTGCCCGCGCCGCCGGCCCCGGCCCCGAGGAGCTTCTTCACCTGCGGCGCCATCAACCA---CTTCAAC
TACCAAGGCTGCCGCGGGTACGTGTCCGACGCCAGGGGCGCCCGGTGCCCGGCCTGCGGGAACGAGATGGCGACCGTGTC
CCAGTACGTGCCGCCGCCGCCG---------GCCA------AGCCGGAGGAGAGCGCAAACGCAGCGACGACGGGGTTCG
TGCAGGGGGCCGTGACGTACACGGTGACGGACGACCTGGCCGTCGCGCCCATGTCGGCCATCTCCAGCATCGCGCGGCTC
GGCGC------------------CGTCGCCGCCGTCGGGGGCCTCGGCGCGCTCCAGGAGAGGACCGTGGAGCTCGGGTA
CAAGGAGGGCCTGGAGATCCTCAAGGCCTCGCTGCGGTCCAAGACTGTCCTCACAGACGTCTTCCTCGGCACCGGCGGCA
AGAAGCCTCCTCCGTCGTCCAAGAACAACGGCAA------CGGCGGCACAAGATACGAGTGTCTCACCTGGCGTGTTTGA
CGTG---------------------CGTGCAGCTTCATATATGGTACTAGTACAATCTTGCAGCGAATAGGCCAGTGGAA
GATTGTAAAGACGGAGGGCAACAACAAAATGGAACAAAGTTATTAGAGGCATACTCATCAGGGTATATGCCCCAAAATGA
GTGGTAGTC----------------TAGCAATAATGCTTGATATATATATCCAGCTTGAAATTTCTAAAATGTTTTAAAT
AGTGGTCCGAATGGTATGTACTGAAATTCATGACATGGTGTGAAAATAGTTTAAAAGTAGATGATTAACTGAAAATCTAA
ATATTCCTGAATGGTATGGGATAATTAAAGTTGTCGTTAAATGAGTGTGGATTTTATTAAAATTCACCTACATGTGTCTC
AAACTATTGAAATGTGTGTTCTAGAATGTCATTGGGTTGTTCCAAAAATTTGTTTTTTTAAATACATATGTAATTATTGA
AATTGGTGTCGATAAAATGCCATAAAATTATTTCAAATTTCAACATGTGTGAAATAATTTGAAATGTTTGTCCAATATGA
TCATAAATTGTTTGATGTATTTAACATTAATTTCAAATATGTGTTTCTAAAATGGCACTAAAACAAATGTTTTTCAATTT
TTGAAGTCACTGTTTTTGAAAAATGAAATTGGGAGAGCTTTGCTCCTGAACTAAAAAAAACATTTGGTTACAACTTACAA
TGCATGTACGACGTATTTTTGTTTGAAATAATGCCAAAAATACCAAAGACGTAGAAATGGATTTAAAAATATATTTTTTA
CAAAGAAGATGTTTTCCAAACAATTCCAAAATACTTGAAACTGTGAAAAGGGAAATAATTAAATTTCTTAACAGGTTTCA
ATTAGTTTTCGATTGGCATGTATTAAAATTTGTGATACAGTGTGAAATAGTTTTAAACTAGATAATTAATTGGCATTTTG
AATATTTCTAAATGGTATGAAATAATTAAAGATTTGGTAAATGTGGGTGGAATATTATTGAAATCTACTAAAATATG
>chr6D_640
TTGCTGGACT----------------------------------------------------------------------
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---------GTTCTGACGGATATTTTGGTGGACACGTCAATTATCTCCCGCGTTGAATGCATGGGC-ATATGTGCTAGTA
GTTAAAATATCTCTAAATTTACTGAACACTTGTATTTTTTTTATTTTTTACAAAGAAAGTCATTGATGCGCTAAGAAACG
CACTACAATATGTTGGAGAATATCAGCTCACCATGGGTTCTCAGTTGTCACCGTGACCTTTGAGATTCCGCGCGGCCTTA
CAAGGGAAAGCAGAGGATACGATTCGCTTGTTGCCCGACAGACAATGTTGGGCGGCAAAATCTAGTGGCAAGCCCACGGA
TGCTGCGTCCGG---------------------CCATTCCATTCCCTCCAAGAAATCAGCCTAGGGAGAGTGGAAGTTGT
TGCATCGAGGTGGTCCAAGATGGCGGACACCAGCGGTGCCCCGAGCGACGGCGCGCCGATCACCATGAAGCTCCTGGTGG
ACTCGAGGCCGCCGCGGCCGCGCGTGGTGTTCGCCGAGGCCGGCAAGGACGCCGTCGACTTCCTCTTCTCTCTCCTCACC
CTGCCGGCCGGCACGGCGGTGAGGCTGCTGGGGAAGGAGTCCATGTCCATGGCGGGCAGCGTCGGTAACCTCTACGCCAG
CGTGGAGCGGCTCGAGGGCAGCTACCTCCGGCCCGGCTTCGCCAAGGACGCCCTCCTCTGCCCCGCCGTGCGGGCGAGCC
CCCTCCTCCGCCTGCCGCCGCCGCCGGCCCCGGCCCCGAGGACCTTCTTCACCTGCGGCCCCAGCAACAAGTCCTTCAAC
TACGCAGCCTGCCGCGGGTACGTGTCCGACGCCAGGGGCGCCCGGTGCCCGTCCTGCGGGAGCGAGATGGCGATCGAGAA
CCAGTACGTGCCGCCGCCGCCGCCAGCGCCGGCCC------GGCCGGAGCAGAGCGCCGCCACGGTGACGACGGGGTTCG
TGCAGGGCGCCGTGACGTACACGGTGACGGACGACCTGGCCGTCGCGCCCATGTCGGCCATCTCCAGCATCGCGCGGCTA
GGCGC------------------C------------------CTCGCCGCGCTCCAGGAGAGGACCGTGCAGCTCGGGTA
CAAGGAGGGTCTGGAGATCGTCAAGGCCTCGCTGCGGTCCAAGACTGTCCTCACGGACGTCTTCCTCTGCACCGGCGGCA
AGAAGCCTCCTCCGTCGTCCAAGAAC---GGCAA------CGGCGGCACAAGATACGAGTGTCTCGCCTGGCGTGTTTGA
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>chr6A_708
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-------------------------------------------------------------------ATATGTGCTAGTA
GTTGTAATATCTCTAAATTTACTGAACACTTGGTAT-------TTTTGTACAAAGAAAATCA-TGATGCACTAAGAAACG
CACTATAATATGCCGGAGAATATGAACTGACCATGGGTTCTCACAG---------------------------------A
CAAGGGAAAGCAGAGGATACGATTCCCTTGTTACCCGACAGACATTGTTCGGCGGCAAAATGTAGTGGCAAGCCCACTGA
TGCTGCGTGCGTGATATAGATTCAGATTTCAGACCATTCCATTCCCTCCAAGAAGTCAATCTGGCCAGACAAGCTG----
----TCGAGGTCGTCCAAGATGGCGGACACCACCGGATGCCCGAGCGC---CGCGCCGATCACCATGAAGCTCCTGGTGG
ACTCGAGGCCGCCGCGGCCGCGCGTGGTGTTCGCGGAGGCCGGCAAGGACGCCGTCGACTTCCTCTTCTCGCTCCTCACC
CTCCCGGCCGGCACGGCGGTGAGGCTGCTGGGGAAGGAGTCCA------TGGCGGGCAGCGTCGGCAACCTCTACGCCAG
CGTGGAGCGGCTCGAGGGCAGCTACCTCCGGCCCGGCTTCGCCAAGGACGCCCTCCTCTGCCCCGCCGCGCAGGCGAGCC
CGCTCCTCCGCCTGCCGGCGCCGCCGGCCCCGGCCCCGAGGAGCTTCTTCACCTGCGGCGCCATCAACCA---CTTCAAC
TACCAAGGCTGCCGCGGGTACGTGTCCGACGCGAGGGGCGCCCGGTGCCCGTCCTGCGGGAACGAGATGGCGACCGAGTC
CCAGTACGTGCCGCCGCCGGCGACGGCGTCCGCCCAGCAGCAGCAGGAGCAGAGCGCCGTGAAA---------GGGTTCG
TGCAGGGGGCCGTGACGTACACGGTGACTGACGACCTGGCCGTGACGCCCATGTCGGCCATCTCCAGCATCGCGCGGCTC
GGCGCGCTCGCCGCCGTCGGGGGC------------------CTCGCCGCGCTCCAGGAGAAGACCGTGCAGCTCGGGTA
CAAGGAAGGCCTGGAGATCCTCAAGGCCTCGCTGCGGTCCAAGACTGTCCTCACGGACGTCTTCCTCTGCACCGGCGGCA
AGAAGCCTCCTCCGTCGTCCAAGAAC---GGCAACGGCAACGGCGGCACAAGATACGAGTGTCTCGCCTGGCGTGTTTGA
GTGCGTGAAGCCTTCACTGTTTGGACGTGCAGCTTCATCTTCATCTAACGGATCAAAGCC--------------------
-----------------------ACAAAATGGAACAAAGTGATCACAGGCATACACATGTCCACCTATCATCAGGGGATT
TATTATCTTAAAAGTATATACATTTTAGCAATAATGCTTGATGTATATATCCAGCTTGAATTTTCTAAAATGTTTTAGAT
AGTTTTTCGAATGGTATGTACTGAAATTCATGACATGGTGTGT-AATAGTTTACAAATAGATGATTAACTGGAAAATTGA
ATATTCCTGAATGGTATGGAATAACTAA----------------------------------------------------
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>SNPs
SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS----------------SS--------------------S---S---S-SSSSSS-SSS----------S--
-------------------------S----SS---S--------------------------------------------
--------------------------------------------S-S---------------------------------
----------------------------------------------------S---------------SSSSSS-SSS--
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----------S-S------------------S--------------------------------S---------------
--S-------------------------------------------------------------------S---------
-----------------S----------------------------------S---S-----------------------
---------------------------S-----------------------S---S--S--------S-------S----
----------------S---------------------------------------------------------------
---------------------------------------------------S------------------------S---
----------------------------------S--------------S-------SSS-S---S--------------
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------------------------SSSSSSSSSSSSSSSSSS----S----------------------S----------
------------------------------------------------------S------------S------------
--------------------------SSS------------------------------------S--------------
SSSS----------------------------------S-SSSSSSSSS-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-----------------S--S-S--------S---SSSSSSS---SSS-SSSSSSSS
SSSSSSS-S---------------------------------S-----------------S----------------S--
---SS-S-----------------------------------SS---------S--S--------------S---SS-S-
-------------------S----S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_495
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---------------------------------------------------------------------------GTTCG
AATCTCAGTTGGCGC-----------------------------------------------------------------
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>reverse_2007
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------AAAGACGGAGGGCAACAACA------------------------------------------------------
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