>input_sequence_68290
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------------ATGCACAGCATGATGAACAGCTCGATGAAGGTCACCGATGTCAACATGGAAACAGAGGTGCCTGAGCT
TCTTCTTGTACCAAATCACGTCGATTCCAACGGACGCCATTTGCCAAACC---------ACAGCCCGATGAAGATCACCG
ATGTGGATATGAAAATAGAGGCGCTAACAAATTACATCAACCTCAGACGAGTAGGAGGAGAGGGGGGCAGTATGAATG--
-TGGGGAACAAGAAGACC---AAGAAGAAGATTTTCCGTGTGCCCCAGGACGAGCTGGATGAGATTCTTTCGTACCAAGC
GGCGCCGGCGCCCGCTTGGCAGAGTGCGGCCAAACGCTATCCTTGGGTCGTCGCCGAGATGGAGAAGATCAAGGTAGGCT
TTCTCGCCGGGCAGGAGAAGATGAGGCGGCAGTACGAGGCCCTGGGCTATGCCACGTTTGAAGCGGAGGTCACCGATGAT
GA---GCAGGAGGAAGACGCGGCAGTGACGACTCCTTATCAGGACAAGGATGAAACATTGACGACATCTTTTCATGAGCG
GAATGATGATGCAGCAGTGACAACTCCTTGCAAGGAGAACTTGGAGAAGGATGAAACATCAGCGGCATCTTTTCATGAGA
AGAATGACGATGCACAAGCAGCAGCAGTGACGACTCCTTACAAGGAGAAGGATGAAACATCAGCGGCATCTTTTCATGAG
GAGAATGACGGTGCAGCAGCGACAACTTCTCCTTGGATCACTCCACGAGGAAGAGGCCGAAGAAGATTTCGCCCGGGAGT
CGTCAAGCAAGCATGCGGTGTTAAAAAGATAACTTAG-------------------------------------------
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>chr5A_1_TraesCS5A01G423500
TTAGACGATCAAATGTGGTGTAGATGCCAGTAGCTCATGCAGTGGTCCTTGCGAGCCTTGCTTTCTAAACCTCTTCTTTT
CTTCTCCTCTTGGCCGATGCGGTTC-TTTTTCCGGATAGAGATTTCTTGCAAAGCAGAAGGCTTGTACTAATTTTGGTAA
TTTAGAGTTGTTTACATCTCACCCTCGGTTACGCCATGGAATTCCACGGACTTTATGCTAAAGAGAATCTCCAACGCATT
CTCTAAACTTATAAAACTCCCAATAATTCTGGGTATTGGTACACTTCAACTAGTACATTCTTTAAACTCAATCCCAATAA
TTTTTCCTCTGCCATTTCTTCCATATTTTGCATACATATACCTCAGTTTCAAAATTATATTTATTCCATTGAGCCTC---
--------------GCACTTTA----------------------------------------------------------
---------------------------------------------------------------------------TCCAA
AGCACCTTTTTTTTTGTGAGCAACCCT--------------------------------------------------AGC
CACGCACTTCGGCCTGGTAGCTACTTTTTTTTTAGGGCTGTCCTGGTAGCTACTAGGCGGGCTGCGTGGGTCTGAGCTAC
TGTGT--TCGCTAGGCCTTTGGGATCCCACAGCCCGATTTCTGTATGTCTCGTGGTATACAGACGCCGCCCATATATTCT
CC----------------------AAAAAAAAAACGCCGCCCTTCTG---------------------------------
-------GGGACAAGCCTTGGCGATCGAGGAGAAGGGTGGAGAC---GCAGATCGGCGCCG-GCGGCGACTGCGCTGGTA
CGTACTGTACGTGCCTTCTATCTCTTCGATTCCTCTGTAGGTAC-----GTCTGAGAGAGAGGACGAGGTT-----CGGC
CGGCTAGTCCTCAAGCCCGATTTCATTCTGGAATCCGAATTCGGTGCAGATCTACGTCTAC---CTACCTACCGATTTGA
GTCTCTGGCCGATTCCTGTGC----AGATAGATCCACAGGCCGACTCGGAGCGTGGGTGCTGTCTTCCGGATCACGTCTG
AGCATATACA------CACATAAATATGGGTGTGGAGATCGCCTGAGCTTCTACCGGATCACGTCGATTCCGCTGGACGA
CGCCATTTGCCGATGCACAGCATGATGAACAGCTCGATGAAGGTCACCGATGTCAACATGGAAACAGAGGTGCCTGAGCT
TCTTCTTGTACCAAATCACGTCGATTCCAACGGACGCCATTTGCCAAACC---------ACAGCCCGATGAAGATCACCG
ATGTGGATATGAAAATAGAGGCGCTAACAAATTACATCAACCTCAGACGAGTAGGAGGAGAGGGGGGCAGTATGAATG--
-TGGGGAACAAGAAGACC---AAGAAGAAGATTTTCCGTGTGCCCCAGGACGAGCTGGATGAGATTCTTTCGTACCAAGC
GGCGCCGGCGCCCGCTTGGCAGAGTGCGGCCAAACGCTATCCTTGGGTCGTCGCCGAGATGGAGAAGATCAAGGTAGGCT
TTCTCGCCGGGCAGGAGAAGATGAGGCGGCAGTACGAGGCCCTGGGCTATGCCACGTTTGAAGCGGAGGTCACCGATGAT
GA---GCAGGAGGAAGACGCGGCAGTGACGACTCCTTATCAGGACAAGGATGAAACATTGACGACATCTTTTCATGAGCG
GAATGATGATGCAGCAGTGACAACTCCTTGCAAGGAGAACTTGGAGAAGGATGAAACATCAGCGGCATCTTTTCATGAGA
AGAATGACGATGCACAAGCAGCAGCAGTGACGACTCCTTACAAGGAGAAGGATGAAACATCAGCGGCATCTTTTCATGAG
GAGAATGACGGTGCAGCAGCGACAACTTCTCCTTGGATCACTCCACGAGGAAGAGGCCGAAGAAGATTTCGCCCGGGAGT
CGTCAAGCAAGCATGCGGTGTTAAAAAGATAACTTAGGAGTTGTTTCGTTAGGTTTAACTTTGACTTTTCAAGTTTGATT
TGTAAGTCAAAAAATTATCTATTTATGTGTTTTGGTTGTGGCTCATATTCAACAATATTCAGTCATAAGCCATAAGCCAA
ACTCTAAAGTGAGAATTAAGCCTTACTAAGCATCATAGTAGACGTAGTTGTTGTTTTCGGTGTGTTTAGCTTTTGTTGTT
GTAGTAGTTGGTTGCAGTTTTTGATAATGTACCATGTCATGTTTTTAATATCATTTTTTTTGGTTAAAGCTATATCTGAT
AATTTATTTGGTGGACTTGATTATAAGCATCCAGTGAAAACTAACTTTTGGTGAAAATCTGAAAAGTTTGTTCTATTTAT
TTTAGTTGGTTGATAAAAACTTTGTTCTTGGAACATCAGATCGCTTACGGAGGCATTAGATGGCAGGTGGGTTGGCAAGC
AGATCCGCTTAAACAAAATTTGCAGAAACCCCCTCAAATCGCATCGCATTATGTTCCTGAAATCTCTCAGCAGCAGCTCC
CGCGTTTGTATTCTAACAAAAAAAGGTGCCATCGTAGCCCTACGCAGAGGCGAGGCAAACTGCGATGCACGAACCACATG
ACACATGTGGTAAGCAATCCAAACAATTCAAAAAAAACTGTGATGCACGACCCTTGGATAAGCCCTCTGCCCTGTTCGGC
TCTTCCAATCCCTCACTACGCGCTTATGTGTTGCTGTTCCAAGTTTCAGTTACACAATTTCCGAAACAAAGCTTCAGGTT
ATTTCGTCTGTTAAAGGTGAGAAGATTATACTGTCTATTTGCTCAACAAAGTTTGAGCCGAATCAATAATGGAAGTATTA
ATTCCAGCAAGCTGCACGGAGCCAAATAACAACAAAAGGAAAAATTAAACTTCACGTTCGTTTACCTGGGGCTGTGGGGC
ACATCATCATTGCTCGTTAGCCTCAGGATACAAGAAAGATTTGGTGACCAACTATCTTCACACGCGGAGATAATTGT
>chr5B_10
---------CAAATGTGGTATAGATGCCAGTAGCTCATGCAGTAGTCCTTGCCAGCCTTGCTTTCTTCTCCTTTTCTTGT
GTTCTCCTCTTTGCTGATGAGGTTCCTTTTTCGGGATAGAGATTTCTTGCAAAGCAGAAGGCTTGTAATGGTTTTGTTAA
TTTAGAGTTGTTCACATCTCACCCTTGGTCCAGCCCTGGAATTCCACCGACTATATGT---TCACCACACTTGCTATTGA
ACGAAAAGGCACATCTTCAAAACATCCTTTCCCTTCCCTCCAACAGAAAGA-----------------------------
----------------------------------------------------------ATTTGTTCCATCGATCCTCCGG
AAATGCAATTTTCGGGTGAGGGAAGGGGGAAGCTCCTGTCAT-----------------------------------CAG
ACCAACATAAATGGAACCTATCAGTCAGTAGCTTCCTT-------------CTTTTCACAAGAATTTGAGAAACTTCCAT
TGCACTTTTTTTTTTGAGAAATACTTTTTTAGGTT-TTTTTTGAGAAATACTCCCATTGCACTTTATTCCAAACAGGAGC
CTCGCACTTTGGCCTGC-----------------------------TAGCTACTAGGCGGGCTGCATGGCTTTGAGCTAC
TGTGTGTTCGCTACACCTTTGGGATTCCACAGCCCAATTTCTGTATGGCTACCTGTCT----------------------
-C----------------------AAAAAAAAAACTGTATAACAAACGCTACCCTACCCATCA-----------------
---------GGCCAGCCTTGGCGAGAGCAAACGAAGGGGGGGAGAAAGCAGATCGGCGCCG-GCGGCGACTGCGCTGGTA
CGTACTGTGCGTGCCTTCTATCTCTTGGGTTCCTCTGTAGATAC-----GTTTGAGAGGGCGAGGTTCGGTGAGCCCGGC
CGGCTAATCCTCAAGCCCGATTTCATTCTGGAATCCGAATTCGGTGCAGATCTAC-----C---CTACCTACCGATTTGA
GTCTCTGGCCCATTCCTGTGC----AT----ATCCACAGGCCGACTCGGAGC------------TTCCGCCG-------G
AGCATACACG------CACATAAATATGGGTCTGGAGATCACCTGAGCTTCTACCGAATCACGTCGATTCCGCCGGACG-
--CCATTTGCCAATGCACACCCTGATGAACAGCTCGATGAAGGTCACCGATGTCAACATGGAAACAGAGGTGCCCGAGCT
TCTCCTTCCACCAAATCACGTCGATTCCAACGGACGCCTTTTGCCAAAGC---------ACACCCCGATGAAGATCACCG
ATGTGGATATGAAAATAGAGGCGCTAACAAATTACATCAACCTCAGACGAGCAGGAGGAGAGGGGGGCGGTATGAAGAAC
ATGGGGAACAAGAAGACC---AAGAAGAAGATTTTCCGTGTGCCGCAGGACGAGCTGGATGAGATTCTTTCGTACCAAGC
GGCGCCGGCGCCCGCTTGGCAGAGTGCGGCTAAACGCTATCCCTGGGTCGTCGCTGAGATGGAGAAGATCAAGGTGCGCT
TTCTCGCCGGGCAGGAGAGGATGAGGCGGCAGTACGAGGCCCTGGGCTACGCCACGTTTGAAGCGTAGGTCACCGATGAT
GA---GCAGGAGGAAGACGCTGCAGTGATGACTCCTTGCCAGGA------------------------------------
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>chr5D_11
----------AAATGTGGTATAGATGCCACTAGCTCATGCAGTAGTCCTTGCCAGCCTTGCTTTCTTCTCCTTTTATTGT
CTTCTCCTCTTTGCCGATGAGGTTCTTTTT-CCGGATAGAGATTTCTTGCAAAGCAGAAGGCTTGTAATAATTTTGCTAA
TTTAGAGTTGTTTACATCTCACCCTTGGTCCAGCCCTGGAATTCCACCGACTTTATGCTCATCATCACACTTGCTATTGA
ATGAAAAGG-----------------------------------------------------------------------
----------------------------------------------------------ATTTGTTCCATTGCACTTC---
--------------GGTGAGGGAAGGGGGAAGCTCCAGGAAGGCTTCGCTCGCTCGCTTTCAGGAGCGCCCTGTCACCAG
ACCAACATGAATGGAACTTATCAGTCAGTAGCTTCCTTCTCCGCAAGTTACCTTTTCACAAGAATTTGAGAAACTTCCAT
TGCACTTTTTTTTTTGAGAAATACTTTTTTTAAGGGTTTTTTGAGAAATACTTCCATTGCACTTTATTCCAAACACGAGC
CTGGCACTTTAGCCCGC-----------------------------TAGCTACTAGCTGGGCTGCGTGGCTTTGAGCTAC
TGTGTGTTCGCTACGCCTTTGGGATTCCACAGCCCAATTTCTGCATGGCCGGTGGCGTGGCATACCTACCTGTGTTCTCT
CAAAAAAAAAAACCCTACCTGCCTAAAAAAAAAACTGTATAACAAATCACTTCAAAAAAAAAAAAAGCATAACAAACGCC
ACCCATCGGGGCCAGCCTTGGCGAAAACAAACGAA--GGGGGAGAAAGCAGATCGGCGCCG-GCGGCGACTGCGCTGATA
CGTACTGTGCGTGCCTTCTATCTCTTCGATTCCTCTGTAGATACTGTACGTTTGAGAGGACGGGGTTCGGTGAGCCCGGC
CGGCTAATCCTGAAGCCCGAGTTCATTCTGGAATCCGAATTCGGTGCAGATCTAC-----C---CTACCTACCGATTTGA
GTCTCTGGCCGATTCCTGTGC----AG----ATCCACAGGCCGACTCGGAGCGTGGGTGTTGTCTTCCACCG-------G
AGCATATACA------CACATAAATATGGGG--------CGCCTGAGCTTCTACCAAATCACGTCAATTTCGCTGGACG-
--CCATTTGCCAGTGCACATCCTCATG------TCGATGAAGATCACCGATGTCAATATGGAAACAGACGCGC-------
--------TAGCAAATCACATCAATCTC------------TTGCCAATGCATAGCCTGAACAGCTCGATGAAGGCCACCG
ATGTCAATATGGAAATAGAGGCGCTAGCAAATCACATCCGTCTCACACGAA---GAGGAGAGGGGGAGGGTACGGATG--
-TGGGGAACAAGAAGACC---AAGAAGAAGATTTTCCGTGTGCCCCAGGAGGAGCTGGATGACATACTTTCGTTTCA---
---GCTGCCGCCCGCTTGGCCGTCTCTGGGTAAACGCTGTCCGTCACTCGTTGGCGAGTTGGAGAAGATGAAGGAAAGCT
TTTTGGCCGAGCGGGAGAAGATGAGGCGAGAGTACCAGATCATGGGCTACGCCACGTATGAAGCAGAGGTCACCGATGAT
GA------------------------------------------------------------------------------
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>chr5B_641
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-------------------------CGAGGAGAAT--GGGGGAGAAAGCAGATCGGCGCCCCGCGGCGACTGCGCTGGTA
CGT-----GCGTGTCTTTTATCTCTTCGATTCCTCTGTAGATAC-----GTTTGAGAGGACGGGGTTCGGTGAGCCCGGC
CGGCTAATCCTCAAGCCCGAGTTCATTCTGGAATCCGAATTCGGTGCAGATCTAC-----CTACCTACCTACCGATTTGA
GTCTCTGACCGATTCCTGTGC----AG----ATCCACAGGCCGACTCGGAGC------------TTCCGCCG-------G
AGCATACACACACACACACATAAATTTGGGTCTGGAGATCGCCTGAGCTTCTACCGAATCACGTCGATTCCGCTGGACA-
--CCATTTGCCAAAAGACAACCTGATGAACAGCTCGATGAAGATCAGCGATGTCAATATGGAAACAGAGGCGC-------
--------TAGCAAATCACATCAATATC------------TTGCCAATGCACAG---------TTCGATGAAGGCCACCG
ATGTCAATATGGAAATAGAGGCGCTAGCAAATCACATCCGTCTCACACGAC---GAGGAGAGGGGGGGAGTGTGGATG--
-TGGGGAACAAGAAGAAGACGAAGAAGAAGGTTTTCTGTGTGCCGCAGGAGGAGCTGGACGACATACTTTCGTTCCA---
---GCTGCCGCCCACTTGGGCGTCTCTGGCTAAACGCTGCCCTTCACTCGTCGGCGAGTTGGAGAAGATGAAGGACAGCT
TTTTGGCCGAGCGGGAGAAGATGAGATTACAGTACCGGATCATGGGCTACGCCACGTTTGAAGCAGAGGTCCCCGATGAG
GAGGAGGAACAAGAC-----------------------------------------------------------------
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>chr5A_648
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---------------------------------AA--GGGGGAGAAAGCAGATCGGCGCCG-GCGGCGACTGCGCTGGTA
CGT-----GCGTG-CTTCTATCTCTTCGATTCCTCTGTAGATAC-----GTTTGAGAGGACGCGGTTCTCCGA-------
---------------------TTCATTCTGGAATCCGAATTCGGTGCAGATCTAC-----CTACCT----ACCGATTTGA
GTCTCTGGCCGATTCCTGCGCAGATAG----ATCCGCAGGCCGACTCGGAGCGTGGGTGATGTCTTCCGCCG-------G
AGCATACACA------CACATAAATATGGGCCTGGAGATCGCCTGAGCTTCTACCGAACCACGTCGATTCCGCCGGACG-
--CCATTTGCCAATGCACAGCCTGATGAACAGCTCGACGAAGGTCACCGGTGCCAACATGGAAACAGAGGCGC-------
--------TAGCAAATCACATCAATCCC------------TTGCCAGTGCAGAG---------CTCGATGGAGGCCACCA
ATGTCGATATGGAAATAGAGGCGCTAGCAAATCACATCCGTCTCACACGAA---GAGGAGAGGGGGGGAGTGCGAATG--
-TGGGGAACAAGAAGACC---AAGAAGAAGATTTTCCGCGTGCCGCGGGAGGAGCTGGATGACATACTTTCGTTCCA---
---GCTGCCGCCCGCTTGGCCGTCTCTGGCTAAACGCCGTCCTTCTCTCGTCGGCGAGTTGGAGAAGATGAAGGACAGCT
TTTTGCCCGAGCGGGAGAAGATGAGATTACAGTACCGGATCATGGGCTACGCCACGTATGAAGCAGAGGTCACCGATGAT
GATGAGGAGGAGGAAGACACATTGGTGGCGATTCCAGCGGTGGCT---------------------TCTTTTCACGGGGA
GAAGGATGATGCGGCGGCGACATCTTTTCAGG---------TGGAGAAGGATGATGCAACTGCGACATCTTTTCATGG--
-------------------------------------------------------------------------------G
GAGAAGGATGACGTAGCAGCTACATCTTCTCCTTGGATTATTCCACGGGGAAGAGGCCGAAGAAGATTTCGCCCGGGAGT
CGTCAAGCAACCAAGCGGCGTTAAGAAAATAACTTAGG------------------------------------------
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>SNPs
SSSSSSSSS----------S-----------------------S--------S-------------SSS---S-----S-
-----------S-------S-----------------------------------------------S--------S---
-------------------------S---SSS---S-----------S-----------S-SS-SS-SSSSSSSSSSSSS
S-SS---SSS-S-SSSSSSSS-SSSSS-S-SSS-SSSSSSSS--SSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---------S-------
---------------SSSSSSS----------------------------------------------------------
-------------------------------------------------------------------------------S
S----S----------S--SSS--SS------------------------------------------------------
-S-------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------S-S--------
-------------S-----------S---------S-----------S--S-----S-SSSSSSS-SS--SS-S-SS---
-----------------------------------SSSSSSSSSSSS---------------------------------
----------S-S-----------S---------S--S--S--S------------------------------------
--------S-------------------------------S----------S------S-S--SSSSS-S----------
------S------------------------------------------------SSSSS--------------------
---------------------------SSSS----------------------------S---------SSSSSSSSSS-
-------------------------------S------------------------S----------------------S
SS---------S---------S----------------------------------------------------S-----
---S---S------------------------------S---------S-------------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
------------------------------S---------------------------------------------S---
-------------------------------------------------S------------------------------
--------------------S----------------SS-----SSSSSSSSSSSSSSSSSSSSSS--------S-S-SS
---S--------S--S-S----S--SS-SSSSSSSSSSSSS-------------SS--S-S---S------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-----S--S-SS-S------S---S-------------S-S------S--------------------------------
----------S--S----S-----S--S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_420
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TTCCATTGAGCCTCGCACTT------------------------------------------------------------
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>reverse_2517
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------------------------------------CAGATCGCTTACGGAGGCAT------------------------
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