>input_sequence_68278
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----------------------------------------ATGGCCGAGACCAACGGTAACGGCTCCCCGAGTAGTGTGA
CTACGCCACTGATGCTCCACGGGCGCGTGGCGATCGTGACAGGCGGCGCTGGCTGCATCGGCTCGGTCGTGTCGAAGCAC
CTCGCATCCCTAGGCGCGCGCGTGGCGATCGGCTACGTCGGGGACCCGAAGCCGGCGAAGGAGCTCGTGGGCGGCATCAA
CGCCGCGCACGGCGGCGGTCGG---------------------GCCATCGCAGTGAAGGCCGACGTGTCGGACGCAGCGC
AGGTCAGGGCGCTGTTCGACGCGGCGGCGGCGGCGTTCGGCGGGAAGCTCCATGTCTTGGTGACAATGGCAGCGGTGCTA
GACTGCTCGAACCCGATGCTGGCGGATATGAGCGAGGCGTCCTACGACGCCACGTTCGGCATCAACGCGCGGGGCACTTT
CCTGTGCTGCCGGGAGGCGGCGAACCGGCTGGCGCGCGACGGGCGTGGCCGCATCGTCACGTTCTCGTCGTCGGCGGTCG
GGTCACTGCGGCCCGGGTTCACGGCGTACGCTGCCAGCAAGGCGGCGGTGGAGGCGATGACGAGGATCCTGGCGCGGGAG
CTGCGCGGCACGGGGATCACCGCCAACGCGGTGGCGCCGGGGCCCACGGCCTCGCCCTTGTTCTACAACGGCAAGACGCC
TGAGGAGGCTGAACGGTACATCGCCGAGGCGCCACTGGGGCGTATCGGGTTGCCGGGGGACATCGCACCGCTCGTGGGCT
TCCTCGCCAGCGACGCCGGCGGATGGGTCAACGCCCAGGTCCTGCGCTGCAACGGGGGCTCCATCTAG------------
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>chr3B_1_TraesCS3B01G467300
CGTATCGGCGCTAGCGACTAATGCTGGGCCTTGAGCCATCGGTCCGCTCGGTCGGCCCGGTTAAAGACCGGACCGGACCG
AAGTTTTTTCGGTCTGATTTTCGCGGCCCGGACCGAACAATTTCTGTAGCGGGCCTGGACCGTACGGTCCGGTCCGTAAC
GGGCCACGAGCGGGCCTAAAAGCTTGCTCGTGTCGTCCACCCTGAGCTGCCACCATGCCCAAGAAGTCAATACGACCTAG
GTAGGCATTAGCAGGACAAGGACAACACCATGTATTTATGTTGATCATAGGGTGTTATATTATGTATATGAGTATTTGTT
TATGGGGATGGGGACCCTAATGGGCCCCGTTCCCCAGTGGGCATGGGTATGAGGAAATTTTATCCCCAGTCATCTAAACG
GGGATGGGGATGGGATGATAGGGAATAGATGGGATGAGGATGTTGTAGGTATCCCCATAGGGGATTGTCCCCATTGCCAT
CCCTACGTACGTTGAATAGACGATGTTGGTGGGATGGTATTTTGATGTTGGTGGGATGGTATTTTTGAAATTTCATTATA
ATCATTCATGCACAAATAACAATGATTCATCCCCCGCAAAAAAAAACAATGATTCAAAGAAAAGTCCCACTCAGGTGATA
TTTTACTTTACATAATATTTAGAGTGATTATTAAACTATCTTTTTTTTATCGCAAAAAAAAACTATCTTTTTTTGGGGTT
AAAACTATATTTCTATAATTCCATATTTTCAGTAACTACGGCCGCGTTCAATAATGTATAGACGATTACATAGCATTTTG
CGAGGGCCAACTTGCTAGTTTTATTTTCTGTTGAAGAAACACAAGTTGTAGTTTTTTTAGAGCGCTCTCTGCCCTATATA
TGTGCTTGCCCCTTGATACAATCATACGCATCGTCTTTATATCACGCTCATAAGCATTCCCTGTTCTTCTGCTTGTTTGG
ATCACGCTCGGTCATTGCGCTAGCTACAGGTTTCGCAGGAATGGCCGAGACCAACGGTAACGGCTCCCCGAGTAGTGTGA
CTACGCCACTGATGCTCCACGGGCGCGTGGCGATCGTGACAGGCGGCGCTGGCTGCATCGGCTCGGTCGTGTCGAAGCAC
CTCGCATCCCTAGGCGCGCGCGTGGCGATCGGCTACGTCGGGGACCCGAAGCCGGCGAAGGAGCTCGTGGGCGGCATCAA
CGCCGCGCACGGCGGCGGTCGG---------------------GCCATCGCAGTGAAGGCCGACGTGTCGGACGCAGCGC
AGGTCAGGGCGCTGTTCGACGCGGCGGCGGCGGCGTTCGGCGGGAAGCTCCATGTCTTGGTGACAATGGCAGCGGTGCTA
GACTGCTCGAACCCGATGCTGGCGGATATGAGCGAGGCGTCCTACGACGCCACGTTCGGCATCAACGCGCGGGGCACTTT
CCTGTGCTGCCGGGAGGCGGCGAACCGGCTGGCGCGCGACGGGCGTGGCCGCATCGTCACGTTCTCGTCGTCGGCGGTCG
GGTCACTGCGGCCCGGGTTCACGGCGTACGCTGCCAGCAAGGCGGCGGTGGAGGCGATGACGAGGATCCTGGCGCGGGAG
CTGCGCGGCACGGGGATCACCGCCAACGCGGTGGCGCCGGGGCCCACGGCCTCGCCCTTGTTCTACAACGGCAAGACGCC
TGAGGAGGCTGAACGGTACATCGCCGAGGCGCCACTGGGGCGTATCGGGTTGCCGGGGGACATCGCACCGCTCGTGGGCT
TCCTCGCCAGCGACGCCGGCGGATGGGTCAACGCCCAGGTCCTGCGCTGCAACGGGGGCTCCATCTAGCCTCCGGACTGG
AATAATGCGCACGAACGTAGTGCTACTTTTTTTTTTTTTGACAGAGGGATTGGCCCGTTGCAATCAGTCATTGATTTTTT
CTTGGACATCACTAGGCATCAGACTATAGACAATCTGCATCTGTCAGACTAGTGGAAGGCCGTCCGATGAGGTGCATCCA
GGTCGTCCGATCCTAATCAGGGCCACGCAAGATTTGTTGACTTATTTGTTAATTGATTGCTTCCTTC-------------
-------ATAACTGCTCCTTCAATCCTCGCTAATC-------------TCTCTATTATGGTAA----CTCCGAATATACA
GCATGCACATGCACCGCTAGAATTAAGTTTGTTTTCAACTATTGCATCGCATAATTGCTTCCAGCGTCTCAACAATA-TG
CTTCGATTACAACCAAATTTATTCAATCTAATAGTAGAAATTGTGTTTGAGCTAACAGAAATTTGTGCCGATTATGATAG
ATATTTATTTCCTACTAAACAG-AGTTTGTTTCTGTCGACTAAAAAATTGGCTTCCATTGCAAGTTATTTTTGCTTCTCT
TGGTGACAGTTACATTTATTTTTGCTAAGACATAAATTGTACGTTTT-----TAACAAAAAAAAGTTTGCTACCAGAGAG
AAAGGAATTTGCTTCCATGCAACAAAAGCTTAATACAAATACAAAAAA---TTACATAAGAAAAATTGTTACAAGATCCA
CCCATAAGATGGCTGGGAAGCAAGGGTATATTTTCAAATGAAAAAATTACATACGAAAAACGGTTACAAGGCCCATGCAT
AAGATGCCTGGAAAGCAAGGGTATGAGTTCAGCAGCGCAATTGGGAACGCAAACACGAAATGTTGCCGAATAAATATTGA
TGCCACTATGACGGAAGCAAGGGACATTGTAGCCATCTAATAGCGCAACATGGCAGTATCCTGGTAGTGGTAGGTTGCAG
AAGCTCGAACTCACGCACTACGTCAGCAAGCGCATCCTTAGGGAGGGCTTCGGTCGTTATCCGCCAAAGTCTCCA
>chr3B_1012
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---------------------------------------------------CAACGGCAACGGGGCCGCGAGCAGCGTGA
CGGCGCCGCTGATGCTCCACGGGCGCGTGGCGATCGTGACGGGCGGCGCCGGCGGCATCGGCTCGGCCGTGTCGAAGCAC
CTGGCAGCCCTGGGCGCGCGCGTGGCGGTGGCCTAGGTCGGGGGCCCGGCGCCGGCCAAGGAGGTCGTGGCCGGCATCAA
CGCCGCCCACGGCGACGGCCAT---------------------GCCATCGCGGTGGAGGCGGACGTGTCGGACGCGGCGC
AGGTGCGGGCGCTGTTCGACGCGGCGGCGGCGGCGTTCGGCGGGGAGCTGCACGTGCTCGTCACGACAGCGGCGGTGCTG
GACTACTCGTACCCGGCGCTGGCGGAGACGAGCGAGGCGACGTACGACGCCGCGTTCGGCGTCAACGCGCGGGGCACCTT
CCTGTGCCTCCGGGAGGCGGCCAACCGGCTGGCGCGCGACGGGCGGGGCCGCATCGTCACCTTCTCGTCGTCGGGGGTCG
GGTCGCTGCGGCCCGGCTACGCGGCGTACGCGGCCAGCAAGGCGGCGGTGGAGACGATGACGAGGATCCTGGCCAAGGAG
CTGCGGGGCACGGGGATCACCGCCAACGCCGTGGCGCCGGGGTCCACGGCCACCCCGATGTTCTACAACGGGAAGACGGA
GGAGGAGGCGGCGCGGTACATCGCCGAGGCGCCGCTGGGGCGGCTCGGGCTGCCGGAGGACATCGCGCCGCTCGTCGGGT
TCCTCGCCAGCGACGCCGGCGGGTGGGTCAACGGCCAGGTGCTGCGCTGCAACGGGGGCACCATATAGCCTCC-------
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>chr5D_1022
GGCGCCGCCGCG--------------------------------------------------------------------
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-------------------------------------------------------------------------AGCGTGA
CGGCGCCGATGATGCTGCACGGGCGCGTGGCGATCGTCACGGGCGGCGCTGGAGGGATCGGCTCGGCCGTGTCGAGGCAC
CTGGCGTCCCTCGGCGCGCGCGTGGCCGTCGCCTACGTCGGGGACCCGGCGCCCGCGCGGGAGCTCGTGGCCGCCATCAA
CAACGCCGCGCACGCCGGCGACCAT---------GGCCCGCGCGCCGTGGCGGTGGAGGCGGACGTGTCGGACGCGGCGC
AGGTGCAGGCGCTGTTCGACGCGGCGGCGGCGGCGTTCGGCGGGGAGCTGCACGTGCTGGTCACGGCGGCGGCGGTGATG
GACACCTCCTACCCGCCGCTGGCCGACACCAGCGAGGCGACCTACGACGCCGCCTTCGGCACCAACGCGCGGGGCACCTT
CCTGTGCCTCCGCGAGGCGGCGCGCAGGCTGGCCCGCGACGGGCGCGGCCGGATCGTCACCTTCTCGTCGTCCGGGGTCG
GGTCGCTGCGCCCGGGCTACGCGGCGTACGCGGCCAGCAAGGCGGCCGTGGAGACCATGACGAGGATCCTGGCGCGCGAG
CTGCGGGGCACCGGGATCACCGCCAACGCCGTGGCCCCCGGGTCCACGGCCACGCCCATGTTCTACGGCGGCAAGACGGA
CGAGGAGGCCGAGCGGTACATCGCGGAGGCGCCGCTGGGGAGGCTGGGGATGCCCGAGGACATCGCGCCGCTCGTGGGCT
TCCTCGCCAGCGACGCCGGCGGGTGGGTCAACGCCCAGGTCCTGCGCTGCAACGGCGGCACCATCT--------------
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>chr5A_1026
CC-----CCGCG--------------------------------------------------------------------
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-------------------------------------------------------------------------AGCGTGA
CCGCGCCGATGATGCTGCACGGGCGCGTGGCGATCGTCACGGGCGGCGCCGGCGGGATCGGCTCGGCCGTGTCGCGGCAC
CTGGCGTCCCTCGGCGCGCGCGTGGCCGTCGCCTACGTCGGGGACCCGGCGCCGGCGCGGGACCTCGTGGCCGGCATCAA
CGCCGCCGCGCACGGAGCCGACCAT---------GATCCGCGCGCCGTGGCGGTGGAGGCGGACGTGTCGGACACGGCGC
AGGTGCGGGCGCTGTTCGACGCGGCGGCGGCGGCGTTCGGCGGGGAGCTGCACGTGCTGGTGACGGCGGCGGCGGTGATG
GACACCTCCTACCCGCTGCTGGCGGACACGAGCGAGGCGACCTACGACGCGGCCTTCGGCACCAACGCGCGGGGCACCTT
CCTGTGCCTCCGCGAGGCGGCGCGCCGGCTGGCCCGCGACGGCCGCGGCCGGATCGTCACCTTCTCGTCGTCCGGGGTCG
GGTCGCTGCGGCCGGGCTACGCGGCGTACGCGGCCAGCAAGGCGGCCGTGGAGACCATGACGAGGATCCTGGCGCGGGAG
CTGCGGGGCACCGGGATCACCGCCAACGCCGTGGCCCCCGGGTCCACGGCCACGCCCATGTTCTACGGCGGCAAGACGGA
CGAGGAGGCGGAGCGGTACATCGCGGAGGCGCCGCTGGGGAGGCTGGGGATGCCCGAAGACATCGCCCCGCTCGTGGGCT
TCCTCGCCAGCGACGCCGGCGGGTGGGTCAACGCCCAGGTCCTGCGCTGCAACGGCGGCACCATCT--------------
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>chr5B_1026
CC-----CCGTG--------------------------------------------------------------------
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-------------------------------------------------------------------------AGCGTGA
CGGCGCCGATGATGCTGCACGGGCGCGTGGCGATCGTCACGGGCGGCGCCGGCGGCATTGGCTCGGCCGTGTCGAGGCAC
CTGGCGTCCCTCGGCGCGCGCGTGGCCGTCGCCTACGTCGGGGACCCGGCGCCCGCGCGGGACCTCGTGGCCGCCATCAA
CGCCGCCCCCGAGCACGGCGCTTCTGACCCTGGAGGCCCGCGCGCCGTGGCGGTGGAGGCGGACGTGTCGGACGCGGCGC
AGGTGCGGGCGCTGTTCGACGCGGCGGCGGCGGCGTTCGGCGGGGAGCTGCACGTGCTGGTCACGGCGGCGGCGGTGATG
GACACCTCCTACCCGCCGCTGGCCGACACCAGCGAGGCGGCCTACGACGCGGCCTTCGGCACCAACGCGCGGGGCACCTT
CCTGTGCCTCCGCGAGGCGGCGCGCCGGCTGGCCCGCGACGGGCGGGGGCGGATCGTCACCTTCTCGTCGTCCGGGGTCG
GGTCGCTGCGCCCGGGCTACGCGGCGTACGCGGCCAGCAAGGCGGCCGTGGAGACCATGACGAGGATCCTGGCGCGGGAG
CTGCGGGGCACCGGGATCACCGCCAACGCCGTGGCCCCGGGGTCCACGGCCACGCCCATGTTCTACGGCGGCAAGACGGA
CGAGGAGGCCGAGCGGTACATCGCGGAGGCGCCGCTGGGGAGGCTGGGGATGCCCGAGGACATCGCGCCGCTTGTGGGCT
TCCTCGCCAGCGACGCCGGCGGGTGGGTCAACGCCCAGGTCCTGCGCTGCAACGGCGGCACCAT----------------
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>chr4A_1902
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--TGGACACCACTAGGCATCAGACTATAGACAATCTGCATCTGTCAGACTAGTGGAAGGCCGTCC---------------
--------GATCCTAATCAGGGCCACGCAAGATTTGTTGACTTATTTGTTAATTGATTGCTTCCTTC-------------
-------ATAACTGCTCCTTCAATCCTCGCTAATC-------------TCTCTATTATGGTAA----CTCCGAATATACA
GCATGCACATGCACCGCTAGAATTAAGTTTGTTTTCAACTATTGCATCGCATAATTGCTTCCAGCGTCTCAACAATA-TG
CTTCGATTACAACCAAATTTATTCAATCTAATAGTAGAAATTGTGTTTGAGCTAACAGAAATTTGTGCCGATTATGATGG
ATATTTATTTCCTACTAAACAG-AGTTTGTTTCTGTCGACTAAAAAAATCGCTTCCATTGCAAGTTAATTTTGCTTCTCT
TGGTGACAGTTACATTTATTTTTGCTAAGACATAAATTGTACGTTTT-----TAACAAACAAAAGTTTGCTACCAGAGAG
AAAGGAATTTGCTTCCATGCAACAAAAGCTTAATACAAATACAAAAAA--ATTACATAAGAAAAATTGTTACAAGATCCA
CCCATAAGATGGCTGGGAAGCAAGGGTATATTTTCAAATGAAAAAATTACATACAAAAAACTGTTACAAGGCCCATGCAT
AAGATGCCTGGAAAGCAAGGGTATGAGTTCAGCAGCGCAATTGGGAACGCAAACACGAAATGTTGCCGAATAAATATTGT
TGCCACTATGACGGAAGCAAGGGACATTGTAGCCATCTAATAGCGCAACATGGCAGTATCCTGGTAGTGGTAGGTTGCAG
AAGCTCGAACTCACGCACTACGTCAGCAAGCGCATCCTTAGGGAGGGCTTCGGTCGTTATCCGCCAAAGTCTCCA
>chr3B_1918
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------------------TCATACCATAGACAATTTGCATCTATCAGACTAGTGGGGGG-CGTCCGATGAGGTGCATCCA
GGTCGTCCAATCATAATCAGGCCCACCCAAGATTTGTTGACTTATTTGTCAATTGATTGCTTCCTTCGTTGATTGATTGC
TTCCTCCATAACTGCTACCTCTATCCCCGCTAATCCTTCAAAAAAATCTCTCTATTACGGATTTTTCCTCCGAATCTACA
GCGCACACATGCACCGCTACAATTAAGTTTGCTTCCAACAAGTGCATCACATAATTGCTTCCAGCGTCTGAACAAATTTG
CTTCGGCTACAACCAAATTTATTCAATCTAATAGA--AAATTGTGTTTGAGCTAACAAAAATGTGTGCCCATTAATGGTT
ATTTATTTTTCCAACTAAACAACAGTTTGTTTCTGTCGACTAGAAAATTTGCTTCCATTGCAAGTTAATTTTGCTTCTCT
CGGCAAAAGTTAAATTTATTTTTGCTGAGACA--AATTGTACATCTTATATATAACAAACAAAAGGTTGGTGCCAAAGAG
AAAGGAATTTGCTTCCATGCAACAAAAGCTTAATACAAATACAAAAAAAGATTACATAAGAAAAACTGTTACAAGGTCCA
CGTGTAAGATGGCTGGGAAGCAAGGGTAT---------------------------------------------------
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>SNPs
--SSS--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----SS--S----S--S----
-SS----S--------------------------------S------------S------------S-------------
--S--------S---------------S---S----------------SS--------------------S---------
------S-----------S-SS-----------------------------S---S----S--------------S----
----SS--------------------------------------S----S--S--SS-------S-S---S--------S
----S----S-----S----------S-S----------S-----------S-------------------------S--
-------SS------------------------------------S--------------S-------------S-----
----S-----------S-S-S----------S---------------------S--------------------------
-----S-----------------------S------------S--------S-----S--------------------SS
S--------S--S--------------------S--------SS-----S------S---------S-------------
----------------------S------------------------------------S-------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS------S-----------------------------------------------------------------------
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-------------------------------------------------S-----------------S------------
-----------------------------------------------------------S--------------------
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------------------------------------------------------S------S------------------
-------------------------------------------------------------------------------S
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>forward_986
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------CTCGGTCATTGCGCTAGCTA------------------------------------------------------
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>reverse_1888
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-----------------------------------------------GATTGGCCCGTTGCAATCAG-------------
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