>input_sequence_68274
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-----------------------------------ATGGACCTCAGGGCGCTCGCCTTGGCTGCTACCGTGTTCCTCGCC
CTGGCCGCGCCGGCGCCAGTACTCGGGCAGGGCGTGGCGACGTCGTGCACGGCGTCGCTCATCACCAGCTTCACGCCGTG
CCTCAGCTTCCTCACCAACAGCACCAACGGCGGGGGGTCGTCGCCGACGGCGGACTGCTGCCGGTCCCTGTCGGCGGTGG
TGACCACGAGCACCAGCTGCGCCTGCCTCATCCTGACCGGCAACGTGCCGCTCGGCCTGCCGATCAACCGGACCCTCGCC
GTCACGCTGCCCAAGGCCTGCAACTCCATGTCCGTCCCGCTCCAGTGCAAAGGTACCCACATCCTGCCCCGAAAGCACCC
ACGACCACGGGATTCCGAGAACCGAACT-----GTTCAGCGTGAAGTTTCCATTTCTCATTTGGGATTTTGGGTATGAAC
TGCAGATACGTCGGCTCAGCTCCCAGCTCCTGGCCCCGTCGCAGTCTCTCCTGCCATGCCCCCGCTGCGTAAGAACCTCG
CTTAACACTTAACAGTTAACTTCCTCTGCCAGTCGATGGCTCTGGCTTTTCTTTTTGCTGCGATTGATTTTCACTGATGA
ATTGCCGTGGATGATCTTGTCGAATTTGCAGCGCCAATGACGCCGGAGGCGCCGGAACCACCGTCTGAGACCACCCTGAC
GATGCCGCCGACTAGCCAGACCCAGGGGCAGACGAGGCCGCAGGTGGTGCCCAGCTCTGCCTGGAGGAGGGACACTGCGT
CTGTGTCCGTGATGCTGCTCTCCATCATTGGAGCCATGCTGGTCTGA---------------------------------
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>chr2D_1_TraesCS2D01G415900
TATATGCTATGTTTGGTCCCAAATCAAAACCTAGAAGTAGGTTCGATGCCTAAATCGAGTTCGCGAATGGTATAATCGAT
GCGTAAATCGAATATGAGCAGGATAATCGATGCAACTGGGGGCAGAGGGCTTACCGCCATCATCGGCGAACGCCTACCTG
AGCGATGATGAAGCCGGTGCTCAACGCCGATGCTCGCCGTCCAGATCTTGGCTTTGATGCTCGCCGCCGCTCCATCCAGA
CCTTTTGCTCGCCGCCGCCGATGTGAGAGTAGAGAGAGGGGAGAGTGAGCGGTGAGAGAAGGATGTGGGGATTTATGATG
CCGCTTCGTGAAACATTGCGCCTTCTCGCGTGTGTCCCCGCGCTTGCAACCGCCTCCACCCACGTGCCTTGAGTTGCATC
GCTCGAGCCTGACTCTGAAAAAATGGCCCATTTGAACGTTCCTCGAGAGCTAGCCCAAATATGCTCTAAGGTTTGTGTGG
GCCAAGATTACGGTGCAATTCATGCAACCAAACTGTCCAAAATTGCATCCAGCGGGCCTGGCTGAGTCTAATGCACTCTA
CCAGACGCGTCCTTACACTAGTTGTACGACTTGATGTAATCTTTTTGACCTCTTACATTTGTATTTGTTTTAGATGGAAA
AGACAAGTCATAGTTCACCTTGTGCCAGCCCTATGATCAATTGATGATTGGTTATGGTAGTTAACCCAACTCTCAACACG
TC-AACTGACTACCATACAATCCTAAGTTTCCAACTCTCAACACGTCAACATACATATACATAGTAGTATAAGA------
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--------------------------------------------------------------------AAAATTAGTTAT
GGTGGTTACACTGCCACAAACCAACCTCTGATCTACCAAGACGACTCCAGTTCCAACACTATATAAACGCACGCAACGAC
GATGCATCCATCCATCCATCCATCCATTGGCACTCCAACTTCTTCCCCTCCAAATAATCGCGCGGGCTTGTGCTAAGTCG
TGACAAGTATCAGATAGGCAGCTATAGAGATCACGATGGACCTCAGGGCGCTCGCCTTGGCTGCTACCGTGTTCCTCGCC
CTGGCCGCGCCGGCGCCAGTACTCGGGCAGGGCGTGGCGACGTCGTGCACGGCGTCGCTCATCACCAGCTTCACGCCGTG
CCTCAGCTTCCTCACCAACAGCACCAACGGCGGGGGGTCGTCGCCGACGGCGGACTGCTGCCGGTCCCTGTCGGCGGTGG
TGACCACGAGCACCAGCTGCGCCTGCCTCATCCTGACCGGCAACGTGCCGCTCGGCCTGCCGATCAACCGGACCCTCGCC
GTCACGCTGCCCAAGGCCTGCAACTCCATGTCCGTCCCGCTCCAGTGCAAAGGTACCCACATCCTGCCCCGAAAGCACCC
ACGACCACGGGATTCCGAGAACCGAACT-----GTTCAGCGTGAAGTTTCCATTTCTCATTTGGGATTTTGGGTATGAAC
TGCAGATACGTCGGCTCAGCTCCCAGCTCCTGGCCCCGTCGCAGTCTCTCCTGCCATGCCCCCGCTGCGTAAGAACCTCG
CTTAACACTTAACAGTTAACTTCCTCTGCCAGTCGATGGCTCTGGCTTTTCTTTTTGCTGCGATTGATTTTCACTGATGA
ATTGCCGTGGATGATCTTGTCGAATTTGCAGCGCCAATGACGCCGGAGGCGCCGGAACCACCGTCTGAGACCACCCTGAC
GATGCCGCCGACTAGCCAGACCCAGGGGCAGACGAGGCCGCAGGTGGTGCCCAGCTCTGCCTGGAGGAGGGACACTGCGT
CTGTGTCCGTGATGCTGCTCTCCATCATTGGAGCCATGCTGGTCTGATCGGATTCCAGTTAAGCTGAGCACGCAGAGCAG
CTCTGTTGCTGCAAGACGTGCTGATTGC--TAGTACTAGTAT--GAGTTTTTCGTGCTTGTTTTGTCGGACGCTTGTACA
CATATGAAAATACTATAATTAATTCAATTATTGGGCATGTACGCAATACTATTTGGTTTTCCATTGGAAAAAGTCCAAAA
CAAACCTTAAACTTGTAGACGAACGGTAAATCGAACCCTGAACTTATAATCCCAAAAATTAGCACACCGAACTATCTGAT
CCCGGTCTACTTTGAACCTTGAGGGCTTTTAGCTGGTATTTGCTGACGTGGCAAGAATTGTTGAGTGGTTGGCCCACTTA
TTTTATACTTTTTCCATCCCAAAATAAGTGACTCAACTTTGTACTTTATAGTACTCGAACTAAAGACCTCGCACACACAA
TGCCCACACCTACCGAATCGTCCTGAAGGCTACTAGTGATAATATGTCGCGTGTCGTGTATAAGAACAAAAGGAGTGTTC
ATATAGGAAAGCATTTTTTTAAAACTTTCGAAACATTTCCTGAGAAAAATGGGAACAATTTTGAAATACCAAATAAATAT
TTTCAAACACAAATAATTTACGAAATTCCAAAAATATTTTTTGAAAAATGTGTCACGGCAACATTTTGCCAAATACACGT
TTTACATTTTGTAAAACTATATGAATATTTTTTACATTGTTTAAATATTTTAATTTTTTTTGCTCAGATTCCAATATTTG
CTCCCATTTTTTCAAAAAATGTTTATGTTTCAAATAGTGTTTTCTTTTCAAAAATTGATTGTGTTTAAAAAAAATCATGT
TTTAAAAAAGTATTCAGAATATTCAAAAAGTGTTTGCACTTTAAAATTTTTAGGAGATTCCACAAATTTATGAGAAAGGC
AAATCTTGACCTGCGCTATGTGGTTAAATTATTCGGACCTCTTGTTATCGCAGTAACACGTAATGCTTCTAGTGCCTAGC
GGCAGGTGTTC
>chr2A_493
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------------GTGCAATTCACGCAACGAAACGGCCCAAAATTGCATCTAGCGGGTCTGGCTGAGACTAATGCACTCTA
CCAATGGTTGT-----------------ACTTGATGTAATCTTTCTGACCACTTAAATTTGTATTT---TTAGATGGAAA
AGACAAGTCATAGCTCACCTTGTGCCAGCTCGATGATCAACTGATAATTGGTTATGGTAGTTAACCCAACTCTCAACACG
TCTAACTGACTACCATACCATCCCAAGTTTCCAACTCTCAACACGTCAACATAC---------GTAGTATAAGA------
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--------------------------------------------------------------------AAAATTAGTTAT
GGTGGTTACACTGCCACAAACCAACCTCTGATCTACCAACATGACGCCAGCTCCAACACTATATAAACGCACGCAACGAC
GATGCATCCATCCATCC----ATCCATTGGCACTCCAACTTCTTCCCCTCCAAATAATCGCGCGGGCTTGTGCTAAGCCG
TGACAAGTGTCATATAGGCAGCTACAGAGATCAGGATGGACCTCAGGGCGCTCGCCTTTGCCGCTACCGTGCTCCTCGCC
CTGGCCGCGCCGGCGCCGGTACTCGGGCAGGGCGTGGCGACGTCGTGCACGGCGTCGCTCATCACCAGCTTCACGCCGTG
CCTCAGCTTCCTGACCAACAGCACCAACGGCGGGGGGTCGTCGCCGACGGCGGACTGCTGCCGGTCCCTGTCGGCGGTGG
TGACCACGAGCACCAGCTGTGCCTGCCTCATCCTGACCGGCAACGTGCCGCTCGGCCTGCCGATCAACCGGACCCTCGCC
GTCACGCTGCCCAAGGCCTGCAACTCCATGTCCGTCCCGCTCCAGTGCAAAGGTACCCACGTCCTGTCCCGAAAGCACCG
G--------------CGAGAATCGAATTGTTGAGTTGAGCGTGAAGTTTCCGTTTCTCATTT--------GGGTATGAAC
TGCAGATACGTCGGCTCAGCTCCCAGCTCCGGGCCCCGTCGCAGTCTCTCCTGCCATGCCCCCGCTGCGTAAGAACCTCG
CTT-------AACAGTTAACTTCCTCTGCCAGTCAATGGGTCTGGCTTTTCTTTCTGCCGCGATTGGTTTTCACTGATGA
ATTGCCGTGGATGATCTTGTCGAATTTGCAGCGCCAATGACGCCGGAGTCGCCGGAACCACCGTCCGAGACCACCGTGAC
GATGCCGCCGGCTAGCCAGACCCAGGGGCAGACGAGGCCGCAGGTGGTGCCCAGCTCTGCCTGGAGGA---ACAGTGCGC
CTGTGTCCATGA---TGCTCTTCATCATTGGAGCCATGCTGGTCTGATCCGATTCGAGTTAAGCTGAGCACGCAGGGCGG
CTCTGTTGCTGCAAGACGTGCTGATTAGTATACTAGTACTAC--GAGTTTTTCGTGCTTGTTTCGTCGGACACTTGTACA
CATATGAAAATAGTATAATTAATTCAATCATTGGGCAAGTACACAATACTGTTTGTTTCCCCATTTGAA-----------
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>chr2B_628
TTTTA---------------------------------------------------------------------------
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-------------------------------------------------------------------------ATGAAAA
AGACATGTCATAG-TCACCTTGTGCCAGCTCTGTGATCAATTGATGATTGGTTATGGTAGTTAACCCAACTCTCAACGCG
TC-AACTGACTACCATACAATCCCAAGTTTGCAACTCTCAACACGGCAACATACATATAAGGCGTCGTTTGGATTATCGT
TTCCATTACAAATACCCCCGTAAAACTAATACAGACCTCAGCCCGTCGTTTTGTTTTTGACCTGGAAATAGCTCTTGGCC
TGTAAGTTACACGTGTAAATAAATTACACCCGTATTCAGTTACATCCATACCAATCGCGGCCTAAGAGAAAATTAGTTAT
GGTGGTTACACTGCCACAAACCAACCTCTGATCTACCAACATGACTCCAGTTCCAACACTATATAAACGCACGCAACGAC
GATGCATCCATCCATCC----ATCCATTGGTACTCCAACTTCTTTCCCTCGACTTAATCGTGCGTGCTTGTGCTAAGTCG
TGACAAGTTTCAGATAGGCAGCTACAGAGATCACGATGGACCTCAGGGCGCTCGCCTTGGCCGCTACCGTGCTCCTCGCC
CTGGCCGCGCCGGCGCCGGTACTCGGGCAGGGCGTGGCGACGTCGTGCACGGCGTCGCTCATCACCAGCTTCACACCGTG
CCTCAGCTTCCTCACCAACAGCACCAACGGCGGGGGGTCGTCGCCGACGGCGGACTGCTGCCGGTCCCTGTCGGCGGTGG
TGACCACGAGCACCAGCTGCGCCTGCCTCATCCTGACCGGCAACGTGCCGCTCGGCCTGCCCATCAACCGGACCCTCGCC
GTCACGCTGCCCAAGGCCTGCAACTCCATGTCCGTCCCGCTCCAGTGCAAAGGTACCCACATCCTGTCCCGAAAGCACCG
G--------------CGAGAATCGAACTGTTGAGTTGAGCGTGAAGTTTCCGTTTCTCATTT--------GGGTGTGAAC
TGCAGATACGTCGGCTCAGCTCCCAGCTCCGGGCCCCGTCGCTGTCTCTCCTGCCATGCCCCCGCTGCGTAAGAACCTCG
CTT-------AACAGTTAACTTCCTCTGCCAGTCGATGGGTCTGGCTTTTCTTTTTGCAGCGATTGATTTTCACTGATGA
ATTGCCGTGGATGATCTTGTCGAATTTGCAGCGCCAATGACGCCGGAGTCGCCGGAACCACCGTCCGAGACCACCCTGAC
GATGCCGCCGGCTAGCCAGACCCAGGGGCAGACGAGGCCGCAGGTGGTGCCCAGCTCTGCCTGGAGGA---ACAGTGCGC
CTGTGTTCATGA---TGCTCTCCATCATTGGAGCCATGCTGGTCTGATCGGATTCGAGTTAAGCTGAGCACGCAGAGCAG
CACTGTTGCTGCAAGACGTGCTGATTGC--TAGTACTAGTATATGAGTTTTTCGTGCTTGTTTTGTCGGACACTTGTACA
CATATGAAAATACTATA-TTAATTCAATTATTGGGCATGTACGCAATACTATTTGCTTTTCCATTGAAAAAAGTCTAAAA
CAAATCTTGAACTTGTAGACGAACGCTAAATCGAACCCTGAACATGT-ATCCCTGAAATTAGCCCACCGAGCTATCTGAT
CCGGGTCTACTTTGAACCTTGAGG--------------------------------------------------------
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>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS----------S-----S----S-S-------------S------S---------S-------------
---SSS-SSSSSSSSSSSSSSSSSSSSS----------------S-----S----S----------SSS-----------
-------------S---------------S--------------------------------------------------
-----------------------S-----------------------------------SSSS-----------------
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---------------------------------------S-S--------------------------------------
-----------------SSSS-----------------------------------------------------------
--------S---------------S------------------------------------S---------S--------
-----------------S--------------------------------------------------------------
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------------------------------------------------------------------S------------S
SSSSSSSSSSSSSSS------S--------------S--------------S----------SSSSSSSS----------
------------------------------S-------------------------------------------------
---SSSSSSS-----------------------------S------------------S---------------------
------------------------------------------------S----------------S--------------
----------S---------------------------------------------------------SSS---S----S
--------S---SSS----------------------------------------S------------------------
-----------------------------------------------------------------------S--------
-------------------------------------------------------S-------------------S----
----S---S----------------S-----------------S-S-S-----SS--------S------S---------
--S---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_487
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-------------------------------------------------------------------AAGGTTTGTGTGG
GCCAAGA-------------------------------------------------------------------------
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>reverse_2297
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--------------------------------------------------------ATTGTTGAGTGGTTGGCCCA----
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