>input_sequence_68262
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-----------------------------------CGCCGCCGCCGCTCCTCCCTGATCCCGCCGCCGCCGCCGT-----
----GCTCTCGCCAGGCACCACCGCAAACATGGCTGCTGTCCTCACCCGCCCGACGCCGGGCACGGTCCAGTGCTTCGGG
CGCAAGAAGACGGCGGTGGCCGTCGCGTACACCAAGCCAGGGCGCGGCCTCATCAAGGTGAACGGCGCTCCCATCGAGCT
GATCCGCCCGGAGATGCTCCGCCTCAAGGCGTTCGAGCCCATCATGCTCGCCGGCCGCTCCCGCTTCAAGGACATCGACA
TGAGGATCCGCGTTCGCGGCGGCGGGAAGACCTCCCAGATCTACGCCATCCGTCAGGCCGTCGCCAAGGCGCTCGTCGCC
TACTACCAGAAGTATGTCGACGAGGCCGCCAAGAAGGAGGTCAAGGACATCTTCGCCCGCTACGACCGTACCCTCCTCGT
CGCCGACCCCCGTCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCCCGCGCGAGGTTCCAGAAGTCTTACCGTTGAT
TGGCCTGCAGGATCGTC-GACTATTGGGTGGTTTTCTCTGCTTTACCTCCCAAGTTTTAGACTCCGTATGATTAGTTCCG
TACCTTGGCAAGATATTGTGGTATGATTTGCTGTGAGATGTTTTAAGACTACTACTGGGTAGTTGCTCGATT-GTGTTAT
TTACTTGTTA----TGTTAAGGAATTTTGATATGGTTGCGTACTTGCACTATATTTTATGCT------------------
----ATGTT------------------------GTCTGATGACTGATGTTGTCTTTAAGTTAGCCGGATGTGTTGAATGG
TGCTAATACAATCACTTTGATCTT--------------------------------------------------------
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>chr5D_1_TraesCS5D01G149100
GCGACATGAATCTTCTGCACATATAAATCTTTCGCCAGTGCTAAAGCCTCTCCGACTCCCAACGACTTGAGAGTTTCCGG
ATCAGCTAGATTTCTGAACGTAATGCAAGAAGCCCCCACAAAACTGCCTTTTGAATATCGACACACCACAACAACATCAC
CGTATCTACCGTTCCGTGCAACCGCTGCATCCGTGTTGAGTTTTACATGTTCAACTGGTGGAGGTAACCACCCTGTGGGT
CGTGGTGCAGTACTCCTCTGATGGGTTGTCCTTGGTTTGGCTAATATCCTGATGCCAGCCAAGAAAGATTTGATGAAATA
GTGAGTTGAGAGTGGACTCTGAAATATATCCTCATGGATTGCTTTTCTCCTCGCTTTTCAAATCGCCTACATGGTCACTA
CCATCAGCTCATGAGACAG-------------------------TCCCTTGCATTCAAATCATGGTTTGCACACATATGT
TCAACCATCTCTTTTGTAGCGAGTGACCACACACTTCTAGCCAACATGCATTCAAACAGAGCGTGCTTCCAATTGTCTTC
AGATGAACGTATTGCGCGGACGGAAGATGTTAGCCATATGACGGTGATGCAACACATCCGAAGTAGACATCGAGTTCTGC
CCCAACCTCCAGAAGAAGTTCTTTCTTAGATGTCACTGTAGTGTTCCAAAGCTTCGTCCAGTTTTGTTCTGTATCAGACT
GGCCCTGAACATTCTCTAACCAATTCTCCCTTTGGGTCTTTGTTTTGATCAGCATCTTATTAACCGACCTGACAGAAAAT
CTCCCACGACGGTCAGCTCCCATGCCAAGAAATCTTCCACCTCCGTTGGGCCATGGCCGGCGCGGCTCCGT---------
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------------------------------------GCTTGGCGGTCGGTGGGTTG-TTTCTAACACAAGGACCAAATGA
CTAGCCCGAGAGAAGGCCCAACATATTACCTCGGCCCATGCAGCTCTTCACTGACT----AAACCCCAACGCCCCGGACG
TATAAAATCGCCCACTCCTCGCAATCACCTGCCTACGCCGCCGCCGCTCCTCCCTGATCCCGCCGCCGCCGCCGT-----
----GCTCTCGCCAGGCACCACCGCAAACATGGCTGCTGTCCTCACCCGCCCGACGCCGGGCACGGTCCAGTGCTTCGGG
CGCAAGAAGACGGCGGTGGCCGTCGCGTACACCAAGCCAGGGCGCGGCCTCATCAAGGTGAACGGCGCTCCCATCGAGCT
GATCCGCCCGGAGATGCTCCGCCTCAAGGCGTTCGAGCCCATCATGCTCGCCGGCCGCTCCCGCTTCAAGGACATCGACA
TGAGGATCCGCGTTCGCGGCGGCGGGAAGACCTCCCAGATCTACGCCATCCGTCAGGCCGTCGCCAAGGCGCTCGTCGCC
TACTACCAGAAGTATGTCGACGAGGCCGCCAAGAAGGAGGTCAAGGACATCTTCGCCCGCTACGACCGTACCCTCCTCGT
CGCCGACCCCCGTCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCCCGCGCGAGGTTCCAGAAGTCTTACCGTTGAT
TGGCCTGCAGGATCGTC-GACTATTGGGTGGTTTTCTCTGCTTTACCTCCCAAGTTTTAGACTCCGTATGATTAGTTCCG
TACCTTGGCAAGATATTGTGGTATGATTTGCTGTGAGATGTTTTAAGACTACTACTGGGTAGTTGCTCGATT-GTGTTAT
TTACTTGTTA----TGTTAAGGAATTTTGATATGGTTGCGTACTTGCACTATATTTTATGCT------------------
----ATGTT------------------------GTCTGATGACTGATGTTGTCTTTAAGTTAGCCGGATGTGTTGAATGG
TGCTAATACAATCACTTTGATCTTCTAGGAAATGCCCATGTTGCTCTTTATTCTTTGCATCTTCCGTTGGGTCTTCAGTA
TAATTTATATGAGAGTATTGTAAGACTGATTTGCTTAGGATGATACGGTTGATTTCTGTGCTTTACCTCACAAATTCTAG
AACGTTGATGCTTTGTTCCGG--CGTGTCTAGACATCATGATATGAATGTGATGTGAGATGTTTGAGGATGTCGGGTAGT
TGCTGGAATACGACTTTGCTTGATACCCAATTTGAGGAATTTTGATATCATTACCTTGTA---------------TTGAT
GCTATGTTTCCAGTTTCATTAGATTGTTGCAAAGAAATATCATTTTGATCAACTATGAATTGCCCATTTTGCTCTTGTTC
AGCACATCTTTGGTTAGGAGTGATCTGTCTGGGCATGTTGTGCGAACTGGTATTCAACTATATCAGCACTTGGCTGTTGC
ATATTGTGTGTATATTGATGATGTCAAGTAGCAAACTAGCAAATGATGCTTGTTATCATCTATGGCAAAAGCACAAGTAT
AATAGGTTGTAAATAATGTTTAGTTC-----------------AACTAGCCTATAAGTAGAAGTTTTGATTGATGGAAAC
ACAGTGTAGCTCCTTGCATACATGTCTTAGTATCTGCCTATAGGAAAAACATGGTAACTGATTTTAGCAGAATAAGTTTA
ATCCTAAATCAAACACATATCACCGTGTTGCTAGTTCTATGCTATGTCTGTGATTTCTAAATTAAGTTACCTTGAAAGAG
CATTTCATCGTTTGGTTAGGTTTTAAAATTGGTACTATAGTTCAGAATGTTCGTAAACAGTAGAAAAATCCACATCTGAA
ATGGTGCTCAGCAACACAGTGCAATAATGCTGCCATTCCTGACTATCTGCTACTCCCTCCGTTCCCATCTAGAGATTCCA
ACAAGTGACTACATACGAAGCAAAATTAGTGAATCTACACTCTAAAATATGTCTACATACATCCATATGTATTAGTCCAT
TTGAAATGTCTAAAAAGA
>chr5B_1
GCAACATGAATCTTTTGCACATATAAATCTTCTGTGAGTACTAAAGCCTCTCCGACTCCCAACAACTTGAGAGTTTTCGG
ATCAGCTAGATTTCCAAACATAATGCAAGAAGCCCCCATAAAACTGCCTTCTGAATCTCGACACACCACAACAACAACAC
TGTATCTATTGTTCCGTGCAACTGTTGCATCCGTGTTGAGTTTTACATGTTCAACTGGTGGAGCTAACCACCCTGCGGGT
CGTGGTGCAGTACTCCTCCGATGGGTTGTCCTTGGTTTGGTTAATATCTTGATGTCAGCCAAGAAAGATTTGATGAAATA
CTGAGTTGAGAGTGGACTCTGAAATATATCCTCATGGATTGCTTTTCTCCTCGCTTTCCAAATCGCCTACATGGTCACTA
CCATCAGCTCATGAGAGAGTGTCTCGTTCATCAAGAATAGTCATTCCCTTGCATTCAAATCATGCTTTGCACACATATGT
TCAACCATCTCTTCTGTAGCGAGCGACTACACACTTCTAGCCAACATGCATTCAAACAGAGTGTGCTTCCAATTGTCTTC
AGATGAACATATTGCGTGGACGGAAGATGTT-GCCATATGACGGTGATGCAACACATCCGAGGTAGGCATCGACTTCTAC
CCCAACCTCCAGAAGAAGTTCTTTCTTAGATGTCACTGTAGTGTTCCAAAGCTTTGTCCAGTTTTG--------------
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>chr5B_672
TCA-----------------------------------------------------------------------------
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-----------------------------------------------------------AGTTTTGTTCTATATCAGACT
GGCCCTGAACATTCTCTAACCAATTCTCCCTTTGGGTCTTTGTTTTGATCAGCATCTTATTAAAGGACGTGACAGAAAAT
CTCCCACGACGGTCAGCTCCCATGCCCAGAAATCTTCCACCTCCGTTGGGCCATGGCCGGCGCGGCTCCCGGTGGCTTGG
CGGGGGAGCTCCTAACCGGCGCTGAAGGCGCCGGTTGGAGTTTCTGGCGCCCACGCGGGTCCTTGTATGGGCCAGGCCCA
CGAACATGCAGGTAGTAGCGCCAAAAAGAAAACGCAGAAAATATGAAACTCCCAAAAAAGCTGCTCCAACAGGATTCGAT
CTCGCGCCGTTTAGTTACAATGCAGCGTGCCTAACCAGTACATCTATTACAACCTAGTAATTCATTACAGCGCGAGAAAT
TTAACAACAACACTAACCGCACTATTTCTGGTACAAAACAATTTAGGAAGACGTGATTTTTTGGAAAAGAAAAAAAATCT
GAAATAAGTTTTAAAAAAATCGCGAATTAGAAAAAAGTTCATGTATTCAAAAACTTTCACCAAATTTTATAAAAGATCAC
CGTGTATTACATAAAATTTCATTGTATTAAGAAAAATGTTCATTGTATATTATGAAAATTGTTCACCTTTGCATATAAAA
ATGTTCGTCGTGTATCATAAAAATGTTCATCGTATATTATGAAAATTTTCAACGTTCTTACTAAAAGTTGAATGCGTATT
CAAAAATTGTTCGACACATATATTCATATTGTTTCAAAAAGGTTCATCGTGTATTATTTAAAATGTTCAATGGATATAAA
AAATGTTCAGGATACAATTGTTCACTATTTTCTTAATTTTGTTCAGTATATATTACACAATGTTCAATGTGTATTCGCAA
ATTGTTCAACATATTTTCACAAAATGTTCAGTACGTGTCTGAAAATTCTATGTATGGTGAACAATATTCAAATACACATA
GAACAGTTTTTTAAATACGATGAACTCCTTTTGAATGCATGTTGAACAAAATTTCTATACATGATGAACATTTTTTATAC
GCACTGAACATTTTTCAAAATTCATCAAATTTGACAATAGTTCATCAATTTTGAAAAATGTTCATCAATTTTGAAATAAA
GTTCATTGATATGTAATAAAGTTACAAAATTGAAAAAAATCTCGCGCTTAGCAGAAAACAAGAAAGAAAGAAAAAGAAAA
GAAAAACAGAAAAAAAACTCTTTCCACGAAAACAGAAAATAGAAAAAGGTTAAAAGCCTGTCAGTTAACCCGAACTGGTA
GGTTAGCCGAGTGGTTTGGCAAGCGCGCCTGCAGTCGTGAGATCCCTGGTTCGAAACATGGTTCTCGCTAGAAAGTAGTT
TTTTGCGTTTTCAAAAACAGGAAAAAGAAGTGGGCCGGCCCAGTGCGGCGGGAGGGTGTGCGCCCGATTGCATCTATGCC
TAAAATGGGCGCTTAAGGCGCCGTTTAGGGAATGCCGCTTGGCGGTCGGTAGTTTTCTTTCTAACACAAGGACAAAATGA
CTAGCCCGAGAGAAGGCCCAACATATTATCTTGGCCCATGCAGCTCTTCACTGACT----AAACCCCAACGCCTCCGAGG
TATAAAATCGCCCACCCCTCGCAATCACCTGCCTACGCCGCCGCCGCTCCTCCCCGATCCCGCCGCCGCCGCCGTCGCCG
CCGCGCCCTCACCAGGCACCACCGCAAGCATGGCTGCCGTCCTCACCCGCCCGACGCCGGGCACGGTCCAGTGCTTCGGG
CGCAAGAAGACGGCGGTGGCCGTCGCGTACACCAAGCCAGGGCGCGGGCTCATCAAGGTGAACGGCGCCCCCATCGAGCT
GATCCGCCCGGAGATGCTCCGCCTCAAGGCCTTCGAGCCCATCATGCTCGCCGGCCGCTCCCGCTTCAAGGACATCGACA
TGAGGATCCGCGTCCGTGGCGGCGGGAAGACCTCCCAGATCTACGCCATCCGTCAGGCCGTCGCCAAGGCGCTCGTCGCC
TACTACCAGAAGTATGTCGACGAGGCCGCCAAGAAGGAGGTCAAGGACATCTTCGCCCGCTACGACCGTACCCTCCTCGT
CGCCGACCCCCGTCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCCCGCGCGAGGTTCCAGAAGTCTTACCGTTGAT
TGGCCTGCAGGATCGTCTGTCTATTGGGTGGTTTTCTCTGCTTTACCTCCCCAGTTTTAGACTCCGTATGATTAGTTCCG
GACCTTGGCAAGATATTGTGGTATGATGTGCTGTCAGATGTTTTAAGACTACTACTGGGTAGTTGCTCGATT-ATGTTTT
TTACTTGTTACCTATGTTGAGGAATTTTGATATGGTTGCGTACTTGCACTGTATTTTATGCTATGTCCGGTTTTATGCTA
AATGATGTT------------------------GTCTGATGACTGATGTTGTGTTTAAGTTAGCCGGATGAGTTGAATGG
TGCAAATACAATCACTTTGATCTTCTAGGAAATGTCCATGTTGCTCTTTATTCTTTGCATCTTCCGTTGAGTCTTCAGTA
TAATTTATATAAGAGTATTATAAGACTGATTTGCTTAGGATGATACGGTTGATTTCTGTGCTTTACCTCACAAATTCTAG
AATGTTGATGCTTTGTTCCGGCTCGTGTCTAGACACCATGATATGAATGTGACGTGAGATGTTTGAGGATATCGGGTAGT
TGCTGGAATACGACTTTGCTTGATACCCAATTTGAGGAATTTTGATATCATTACCTTGTA---------------TTGAT
GCTATGTTTCCAGTTTCATTAGATTGTTGCAAATAAATATCATTTTGATCAACTATGAATTGCCCATTTTGCTCTTGTTC
AGCACATCTTTGGTTAGGAGTGATCTGTCTGGGCATGTTGTGCGAACTGGTATTCAACTATATCAGCACTCGGCTGTTGC
ATATTGTGTGTATATTGATGATGTCAAGTAGAAAACTAGCAAATGATGCTTGTTATCATCTATAGCAAAAGCACAAGTAT
AATAGGTTGTAAATAACGTTTAGTTCATCTTCCTGTTTCGTTTAACTAGCCTATAAGTAGAAGTTTTGATTGATGGAAAC
ATAGTGTAGCTCCTTGCATACATGTCTTAGTATCTGCCTATAGGAAAAACATGGTAACTGATTTTAGCAGAATAAGTTTA
ATCCTAAATCAAACACATATCACCGTGTTGCTAGTTCTATGCTATGTCTGTGATTTCTAAATTAAGTTACCTAGATAGAG
CATTTCATCATTTGGTTAGTTTTTAAAATTGGTACTATAGTTTAGAATGTTCGTAAACAGTAGAAAAATCCACATCTGAA
ATGGTGCTCAGCAACACAGTGCAATAATGCTGCCATTCCTGACTATCTGCTAC---------------------------
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>chr5A_847
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------------------------------------GCTTGGCGGTCGGTGGGTT--TTTCTAACACAAGGACCAAATGA
CTAGCCCGAGAGAAGGCCCAACATATTA---CGGCCCATGCAGCTCTTCACTGACTGACCAAACCCCAACGCCTCCGGAG
TATAAAATCGCCCACCCCTCGCAATCACCTGCCTACGCCGCCGCCGCTCCTCCCTGATCCCGCCGCCGCCGCCGCCGCCG
CCGCGCTCTCACCAGGCACCACCGCAAGCATGGCTGCCGTCCTCACCCGCCCGACGCCGGGCACGGTCCAGTGCTTCGGG
CGCAAGAAGACGGCGGTGGCCGTCGCGTACACCAAGCCAGGGCGCGGGCTCATCAAGGTGAACGGCGCCCCCATCGAGCT
AATCCGCCCAGAGATGCTCCGCCTCAAGGCCTTCGAGCCCATCATGCTCGCCGGCCGCTCCCGCTTCAAGGACATCGACA
TGAGGATCCGCGTCCGCGGCGGCGGGAAGACCTCCCAGATCTACGCCATCCGCCAGGCCGTCGCCAAGGCGCTCGTGGCC
TACTACCAGAAGTATGTCGACGAGGCCGCCAAGAAGGAGGTCAAGGACATCTTCGCCCGCTACGACCGTACCCTCCTCGT
CGCCGACCCCCGTCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGCGCCCGCGCGAGGTTCCAGAAGTCTTACCGTTGAT
CGGCCTGCAGGATCGTC-GTCTATTGGGTGGTTTTCTCTGCTTTACCTCCCCAGTTTTAGACTCCGTATGATTAGTTCCG
GACCTTGGCAAGATATTGTGGTATGATGTGCTGTGAGATGTTTTAAGACTACTACTGGGTAGTTGCTCGATTTGTGTTTT
TTACTGT-----TATGTTAAGGAATTTTGATATGGTTGCGTACTTGCACTATATTTTATGCT------------------
----ATGTTTCAGGTTTCATGCTGAATGATGTTGTCTGATGACTGATGTCGTGTTTAAGTTAGCCGGATGAGTTGAATGG
GGCAAATACAATCACTTTGATCATCTAGGAAATGCCCATGTTGCTCTTTATTCTCTGCATCTTCCATTGGGTCTTCAGTA
TAATTTATATAAGAGTGT--TAAGACTGATTTGCTTAGGATGATACGGTTGATTTCTGTGCTTTACCTCGCAAATTCTAG
AATGTTGATGCTTTGCTCCGGCTCGTGTATAGACATCATGATATGAATGTGATGTGAGATGTTTGTGGATATCGGTTAGT
TGCTGGAATACGACTTTGCTTGATACCCAATTTGAGGAATTTAGATATCATTACCTTGTATTGATGCTATGCCAGTTGAT
GCCATGTTTCTAGTTTCATTAGATTGTTGCAAATAAATATCATTTTGATCAACTATGAATTGCCCATCTTGCTGTTGTTC
TGCACATCTTTGGTTAGGAGTGATCTGTCCGGGCATGTTGTGCTAACTGGTATTCAACTATATCTGCACTCGGGTGTTGC
ATATTGTGTGTATATTGATGATGTCAAGTAG--------CAAATGATGCTTGTTATCATCTATGGCAAAAGCACAG----
----------------CGTTTAGTTCATCTTCCTGTTTTGTTTAACTAGCCTATAGGTAGAAGTTTTGACTGATGGAAAC
ATAGTGTAGCTCCTTACATACATGTCGTAGTATCTGCCTATAGGAAAAACATGCTATCTGATTTTAGCAGAATAAGTTTA
-TCCTAAATCAAACACGTATCACTGTGTTGCTAGTTCTATGTTATGTCTGTGATCTCTAAATTAAGTTACCTACATAGAG
CATTTCATCATTTGGTTAGCTTTTAAAATTTGTACTATAGTTCAGAATGTTTGTAAACAGTTGAAAAATCCACTTCTGGA
ATGGTGCTCAGCAACACAGTGCAA-AATGCTGCCATTCCTGACTATCTGCTA----------------------------
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>SNPs
--S-----------S----------------SS-SS---S-----------------------S------------S---
--------------SS---S------------------S-----------S-----S-------------------S---
S-------SS------------S-S--------------------------------------S-----------S----
------------------S---------------------S-------S-----S-------------------------
S--------------------------------------------------------S----------------------
----------------S-----------------------------------------------S---------------
-------------S---------S---S---------------------------------S------------------
--------S-------S--------------S-----------------------------S----S------S----S-
------------------------------------------------------S---------------S---------
---------------------------------------------------------------SS---S-----------
--------------------------S------------------------------------------SS---------
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-------------------------------------------------------S------------------------
----------------------------S--------------------------------------------S-S--S-
---------------S----------------------------------------------------------------
----------S----------------S---------S------------------------------------------
-----------------------------------------------S--------------------S-----------
------------------------------S-------------------------------------------------
-------------S------------------------------------------------------------------
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-------------------S-------------------------------S----------------------------
S--------------------------S--------------------------------------------------S-
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----------------------------------------------------S-----------------S---------
---S----------------------------------------------------------------------------
----------S--------S------------------------------------------------------------
--S-------------------------------------------------------------------S---------
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---------------------------------S----------------------------------------------
----------------------------------------------------------------------S---------
-------------------------------S------------------------------------------------
----------------S---------------------------------------------------------------
-S------------------------------------------------------------------------------
------------------------------------------------------------------------S--S----
---------S---------S------------------------------------------------------------
-----------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_259
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-------------------------------------------------------------------------------T
CGTGGTGCAGTACTCCTCT-------------------------------------------------------------
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>reverse_3363
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--CGTTGATGCTTTGTTCCGGC----------------------------------------------------------
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