>input_sequence_68259
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------------------------------------------------ATGGCGCCTAGGGGCGGCTACACAGTAGAAGG
AGGAAGCTCAATAACGTCCATGGATCTAGGCCACGGGAGTGTTGAATCAGGCGAATCTCTTCAGGTTATGTTTGCCATTT
CTTCCTTTATCACTT-CCCCTTTTCGATTTTTTCTGACCCGCTTTGCTAAAACTCGC--TCCTCACTTTATCTTCAGCCG
GAACACCGTATTGTGGATGAACCTTCAAAAGATATTCTGGATCCGGAGTTCTACGGCATAGACACGTCCTCTGCACACAG
ATGCATTCACGGAATGCATCCAGCAAAAAAAGTTGCGTTCGTCTACGCAGCCACAGGGAGGAGGTTCCTAGGATGCCCTC
TCTCGGTCAGCAATTTTTCACTTGCTGAATTG---------------TTCTGTTTTGTTTTGATTCCCCATACTCAGAAA
TTCATGTATCTTCTTTGCCCACTCATTTTTCTCCTGTATGCAGGGAGATGATATGTGCCACTGGTTCTTGTGGATTGATG
AACCATGGGGTCCAGTACTTAGCCGTTCAATAAAAAACCTATGGGATCAAACTTCTCGGGTCGCTGACAGAGCAGCAATG
TTGGAGACAAAGAAGAAGGAAATGGAGCACGCTTACTTAGATCTTTGGACTGAAAGAAGCAATATGGAGATAGAACACGA
GCAGGTTGTCAACGGTTTGAAGAACAGATTAGTTGACAATGAGATTAAGATGTCCAGGAGGTTGGATTTTCACATTAAGT
TGTGTGTGGCATCTATTTCTTCAGCTGTTACTCTAGCTTCAGTGCTGGCTTATGTTCTATCTACATTGACATAG------
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>chr5A_1_TraesCS5A01G354400
ACCGGCCAGACGAAGTGATCTCGTATTATGGAGAGGTAAATTAAGTGGCGACTCGATCGAGCGACCCAGGGCGCAGGATA
AGATTCTATATCTAACCCTTCCA----TGGTCAAACGCCGGAATGATTGGCTTAATTTGTTCCTCCTCCGGCCTCCCTTT
TG-TGACTGGTTAACCAGGAAAGCGTTGCCCTTTAGTTTACCGGCCGGTCGACGTGGATTGATCGGTGGTGCTGCCGCCG
GCCACCGGGACCGGAGTAGAAATAGTACTT-GGGGGTACGGGGCGCGAGAGGTCAAGGAGCACTAGCTCGAATCGATTCC
GAGGGAAAGTTGGTGCCCCGTCCGGCGTTGCACTTTGCATGGCTGGGTGGTCAAATGCTACTCAATTC------------
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--------------------------------------------------------GTACGTGGGGTCGA----------
----GGGCATTGGTGCTGTCCGGCCGGCATTGGGTCTGGAGGAGCGTCACTGTTCGGTCGCGAACTCGCGATGCCTCCTG
TCTCTTCTCATTTGCATGCCCGCCCGCGCGCTCATCCTATATATCGACGGTGCAGATTGCGTCTCGAGTTCGCGTGTTGT
TACTTCAAAGGAAAATATAACTATGGCACCGGCTTGATTTTTGGGACAGTCAATTTTTTTGGGAGCCACTGATCAGACTA
CTGATCTTTTGAGTTTATCAGACTAGTTGAAGACCGTAGGATCGGAAGAATCTTGGCCATCCGATCTGGTACTAATGCCC
CACTAATGTTAGGGACGCGGTTTTTGTCTAGCGCGTTTCACTCACAGCGCATATCCCAGCCGTTGCCGAGCGCATGTGGA
TTCGTGGCGCATGCACTCCAAAACACTGTGGGGCCACACTAGGCTCGTGTATATGCCTGTATATCACATTACTACTCGAC
CCACTCCCACCGTATTCCATATCAGTGGGCCCAGTCCCTGTCCGCCCCCACTTCCCTTTATCCCTTCTGCCTCATTTCTT
CCCAGCCACCAGAAGAAGCGGACCAGTATCTGTTCTTTCTCCCCATCAATGGCGCCTAGGGGCGGCTACACAGTAGAAGG
AGGAAGCTCAATAACGTCCATGGATCTAGGCCACGGGAGTGTTGAATCAGGCGAATCTCTTCAGGTTATGTTTGCCATTT
CTTCCTTTATCACTT-CCCCTTTTCGATTTTTTCTGACCCGCTTTGCTAAAACTCGC--TCCTCACTTTATCTTCAGCCG
GAACACCGTATTGTGGATGAACCTTCAAAAGATATTCTGGATCCGGAGTTCTACGGCATAGACACGTCCTCTGCACACAG
ATGCATTCACGGAATGCATCCAGCAAAAAAAGTTGCGTTCGTCTACGCAGCCACAGGGAGGAGGTTCCTAGGATGCCCTC
TCTCGGTCAGCAATTTTTCACTTGCTGAATTG---------------TTCTGTTTTGTTTTGATTCCCCATACTCAGAAA
TTCATGTATCTTCTTTGCCCACTCATTTTTCTCCTGTATGCAGGGAGATGATATGTGCCACTGGTTCTTGTGGATTGATG
AACCATGGGGTCCAGTACTTAGCCGTTCAATAAAAAACCTATGGGATCAAACTTCTCGGGTCGCTGACAGAGCAGCAATG
TTGGAGACAAAGAAGAAGGAAATGGAGCACGCTTACTTAGATCTTTGGACTGAAAGAAGCAATATGGAGATAGAACACGA
GCAGGTTGTCAACGGTTTGAAGAACAGATTAGTTGACAATGAGATTAAGATGTCCAGGAGGTTGGATTTTCACATTAAGT
TGTGTGTGGCATCTATTTCTTCAGCTGTTACTCTAGCTTCAGTGCTGGCTTATGTTCTATCTACATTGACATAGCAATGT
AGTTTATTAGAAAGTACGTGTTTGCTTCACATCGAAAGCATTTGTCTGCTTCATATCAATGTTTGGGCAGAATGTATGAC
AATTATGTGAGCAGAATTACCCTTTGTTTTGAATGAACTCATTTGTTATGAATCTACTGCTCTTGTTTCACTTTCTAAGT
CTCAATTGAGGTTTTTATTTTCAGAGCAAGATTCAAGTTGAAATTAATCTTTAGTCTATGTTATCTTTCCACTTGTTGTC
GCCATGTCGAGCGCTTGAGCATCAGCAGCTGCATTTTTAGTTTTATGCAGAAAACATCCTTATGAAGTGCTTCAACCGAT
CTATTTGAAGTTCCAAAGACAGACAAGTTTACACTCTGATAAGTATGCAGACCACGTGTCACTGTTATGAATTCCATTTA
AAATGAAACCATTATAGTGCCACTTGTTTGTATACTGCGACGATTATCATTCTTAGGCAATTATTGTACTCCAACTAAAG
TCGGAATCTTTTGTGATGTTACACAATTAATTACAGTAAAAGTTTTCTTTCTCTTAGCCATTGATTTTAGCTCAAGACCG
ATTGTCTTACTCTATAATTTCGTCCCGCGATAATCGGAGTTTGATATCATTGCCGATGTCACAGGTGTGATGAAAAATCT
ATGTCAAAAAAAGAATTCCACCTCAGGAGACGTTTCTCACTAGATCTCGTGCTAAAAAGGTAATCTTCGCTTCCAACGGC
AATAGAATATTTCGGTCCATTTATCCACACGGATATATGCATTTTCCAAGCATTTTATCATGCCCGCATAGGTATTATTA
GATAATGTGCTATACGTCTCCAACGTATCTATAACTTATGAAGTATTCATGCTATTATATTATTTGTTTTGAATGTTTAT
AGGCTTTACTAAACACTTTTATATTATTTTTGGAACTAACCTATTAACTGGAGGCCCGGCCCAAATTGCTGTTTTCTTGA
TTATTTCAGTGTTTCGAAGAAAAGGAATATCAAA
>chr5B_64
---------------------------------------------------------------ACCCAGGGCGCAGGATA
AGATTGTATATCTAACCCTTCCATGCATGGTCAAACACCGGCATGATTGACTTAATTTGTTCCTCCTCCGGTCTCCCTTT
TGCTGACTGGTTAACCAGGAAAGCTTTGGTCTC----TTACTGGGCGATCGACGTGGATTGATCGGCGGTGCCGCCGG--
----CCGGGGCCGGAGTAGAAATAGTACTTGGGGGGTACGGGGCGCGAGAGGTCAAGGAACA----CTCGAATCGATTCG
GAGGGAAAGTTGGTGCCCCGTCCGGCGTTGCACTTTGCATGGCTGGGTGGTCAAATGGGATCCGGCTTGCCTGCTCCCTC
GCCATGCTCCCATCCGTACTCCCACTCCATTCTATGGCTGTCCTTTTCTCTTTTTTTTAATCTAATCATCTCCCCCCTGA
TTTTAAGGGGGTGGGGCCGGGTCTTATTTTGTTCCAATTAAATCATGCCACGTATGCGGGAGCACGGATGGGAGCACGCT
GGGGGAGCAGGCAAGTCTCGTCCGGTCAAATGCTACTCAAATGGGCATCATTCGTAGTACGTGGGGTCGACGGTGACGGC
ACGGGGGCTTTGGTGCTGTCATGCCGGCATTGGGTCTGGAGGAGCGTCACTGTTCGGTCGCA--------ATGCCTCCTG
TCTCTTCTCATCTGCGTGCCCGCCCGCGCGCTCATCCTATA---------------------------------------
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>chr6A_873
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CCACTCCCACCGTATTCCACAGTAACGGGCCCCCCTTCCCTGCCCCCACCACCACACTACCCCCTTCTTCCTCATTTGTC
TCTAGCAAAATAGAGCATT-GACCACGAGCTGTTCTTTCTCAGCGTCAATGGCGCCTAGGAATGGCTACACAGGAGAAGG
AGGGAGCTCAGTCATATCCACGGATCTAAGCCATGGCAGTGTTGAATCAGGCGAATCTCTTCAGGTTATGTTTGCTCCCC
TCTCTTTTCCCACTCCCCCCTTTTTCTTTTGGTCAGATCCGCTTCTTCTTAACCTCTTTTCATCTTCTGATCTGCAGCCC
GTCCAACCTACGGCCGATGTACCTCCAGAAGAGATTCCGGATCCAGAGTTCTTTAGCATAGATACTTCCTCTCCACATAG
GTGCCATCACGAAATGCGTCTAGCAAGAAAAGTGGCTTTCGTCTACGCGGCCACAGGCAGGAGGTTCCTTGGATGCCCTC
TCTCGGTGAGCATTTAGTATCTGATTCAATTATCTAATTTTTTGCATTTCAGTTTG------------------CAGACA
TTCAAATTTCTTCTATATCATCCCAATTTTAT-CTGTATGCAGGGACCTGATAGGTGCTCCTGGTTCATGTGGATAGATG
AAGCATGGGGTCCTGTACTTAGCCGTTCATTAATACAACTCTGGGATCAGGCTCTCCTGGACTCTGGAAGAGCAGCAAGG
TTGCAGACAAAGAAAAAGGAAATGGAGCAAGCATACTTAGAGTTGTGGACTGAGAGGAGCAATATGGAGATTGAAAACTA
GCAGGTGGTCAACAAGTTGAAGACCACAATACTCGACACTGAGATTAAGATGTCAAGGAGGTTGGAATTTCACACTAAGA
--TGTGTGGCATTTATTTCTTCAGCTGTTACCCTTGCTTCAGTGCTCGCTTATGTGCTGTCT------------------
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>chr7A_873
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CCACTCCCACCGTATTCCACAGTAACGGGCCCCCCTTCCCTGCCCCCACCACCACACTACCCCCTTCTTCCTCATTTGTC
TCTAGCAAAACAGAGCATT-GACCACGAGGTGTTCTTTCTCAGCGTCAATGGCGCCTAGGAATGTCTACACAGGAGAAGG
AGGGAGCTCAGTCATATCCACGGATCTAAGCCATGGCAATGTTGAATCAGGCGAATCTCTTCAGGTTATGTTTGCTCCCC
TCTCTTTTCCCACTCCCCCCTTTTTCTTTTGGTCAGATCCGCTTCTTCTTAACCTCTTTTCATCTTCTGATCTGCAGCCC
GTCCAACCTACGGCCGATGTACCTCCAGAAGAGATTCCGCATCCAGAGTTCTTCGGCATAGATACTTCCTATCCACATAG
GTGCCATCACAAAATGTGTCCAGCAAGAAAAGTGGCTTTCGTCTACACGGCCACAGGCAGGAGGTTCCTTGGATGCCCTC
TCTCGGTGAGCATTTAGTATCTGATTCAATTATCTAATTTTTTGCATTTCAGTTTG------------------CAGACA
TTCAAATTTCTTCTATATCATCCCAATTTTAT-CTGTATGCAGGGACCTGATAGGTGCTCCTGGTTCATGTGGATAGATG
AAGCATGGGGTCCTGTACTTAGCCGTTCATTAATACAACTTTGGGATCAGGCTCTCCTGGACTCTGGAGGAGCAGCAAGG
TTGCAGACAAAGAAAAAGGTAATGGAGCAAGCATACTTAGAGTTGTGGACTGAGAGGAGCAATAAGGAGATTGAAAACCA
GCAGGTGGTCAACAAGTTGAAGACCACAATACTCGACACTGAGATTAAGATGTCAAGGAGGTTGGAATTTCACACTAAGA
TGTGTGTGGCATTTATTTCTTCAGCTGTTACCCTTGCTTCAGTGCTCGCTTATGTGCTATCTGCA---------------
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>chr2A_982
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-----------------------------CTGTTCTTTCTCAGCGTCAATGGCGCCTAGGAATGGCTACACAGGAGAAGG
AGGGAGCTCAGTCATATCCATAGATCTAAGCCATGGCAGCGTTGAATCAGGCGAATCTCTTCAGGTTATGTTTGCTCCCC
TCTCTTTTCCCACTCCCCCCTTT---TTTTGGTCAGATCCGCTTCTTCTTAACCTCTTTTCATCTTCTGATCTGCAGCCC
GTCCAGCCTACGGCCGATGTACCTCTAGAAGAGATTCCGGATCCAGAGTTCTTCGGCATAGATACTTCCTCTCCACATAG
GTGCCATCACGAAATGCGTCCAACAAGAAAAGTGGCTTTCGTCTACGCGGCCACAGGCAGGAGGTTCCTTGGATGCCCTC
TCTCGGTGAGCATTTAGTATCTGATTCAATTATCTAATTTTTTGCATTTCTGTTTG------------------CAGACA
TTCAAATTTCTTCTATATCATCCCAATTTTAT-CTGTATGCAGGGACCTGATAGGTGCTCCTGGTTCATGTGGATAGATG
AAGCATGGGGTCCTGTACTTAGCCGTTCATTAATACAACTCTGGGATCAGGCTCTCCTGGACTCTGAAAGAGCAGCAAGG
TTGCAGACAAAGAAAAAGGAAATGGAGCAGGCATACTTAGAGTTGTGGACTGAGAGGAGCAATATGGAGATTGAAAACCA
GCAGGTGGTCAACAAGTTGAAGACCACAATACTCGACATTGAGATTAAGATGTCAAGGAGGTTGGAATTTCACATTAAGA
TGTGTGTGGCATTTATTTCTTCAGCTGTTACCCTTGCTTCAGTGCTCGCTTATGTGCTGTCT------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
-----S------------------------------S----S-------S---------------------S--------
------------------------S---SS--SSSSS----S--S--S------------------S-----S----SSS
SSSS-----S-------------------------------------------------S--SSSS-------------S
---------------------------------------------------------SS-SS-SSS-S------------
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--------S-----------SS---------------------------------------SSSSSSSSS----------
-----------S---S-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-------------------S-SS-SS------SSSSS-SS-S-S---S-SSSSS-SS-SSS-------S--------S-S
S-S---S-SSSSS--S-SSS-----SS-S------------SS-S---------------SSS----------S------
---S------S-S-SS------------S----S--S--------------------------------------SSSSS
SS--S---SS----S---------SSS---SS--S--S------SSSSSS---SSSS----S--SSS-S----S-----S
-SS--S-S--SS-SS----S----S--S----S----S------S-------S---------S--S------S----S--
S---SS-----S-----S--------S------S--S-----------S--------S-----------S----------
-------S----S--SS-SS--SSS-S----S-----------------------SSSSSSSSSSSSSSSSSSS----S-
----SS-S------S-SS-SS-S--S----S-S-------------SS-----S----SS-------S-------S----
--S----------S---------------S---S-S-S--S--------SS--SSS-S--S-S----S----------S-
---S----------S--------------S--S--------SS-S--------S--S--------------S---S--S-
------S------SSS-------S--S-S--S-S----S---------------S-----------S------------S
------------S------------------S--S-----------S--------S------S--SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_843
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-----------------------TGGCACCGGCTTGATTTTTG-------------------------------------
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>reverse_2689
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------------------------------------------------ATTGCCGATGTCACAGGTGT------------
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