>input_sequence_68257
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-----------------------------------------------ATGCCCAAGGGCAGCCTCGAGAACCACCTCTTC
CGAAGTACGTAATCCACTCCACCATGC-ATGCATCCATCGCCATTGATCGATCTCGATCCATCCACACGCCGCACTTTGC
TCTTCGCTGACCATGATGCATTCT---CATGGCGCAGGGGGCGGCTCGTTCGAGCCGCTGTCGTGGGCGACGAGGCTGAA
GATCGCCGCCGGGGCCGCGCGGGGGCTGGCGTTCCTGCACTCGCCGGAGACGCAGATCATCTACCGGGACTTCAAGGCGT
CCAACATCCTCCTCGATCACGACTTCGCCCCCAAGCTGTCCGACTTCGGGCTGGCCAAGAGCGGGCCGGCGGCGGGGCGG
TCGCACGTCACCACGCGGGTCATGGGCAGCTACGGCTACGCGGCGCCCGAGTACGTCGCCACGGGCCACCTCTACGTCAA
GAGCGACGTCTACGGCTTCGGCGTGGTGCTGCTGGAGCTGCTCACGGGGCTCCGCGCGCACGACCCCAACCGGCCCAGCC
ACCAGGCCAACCTCGTCGAGTGGGCGCGCCCCTACATCGCCGGCGGCAGGAAGCTCACGGGGCTCATGGACCAGCGCCTC
GCCGGTCAGTACCCGCCCAAGGCGGCGCTCCGGGCCGCCAGGCTCGCGCACCGCTGCCTCTGCGGCGACCCCAAGGCCCG
GCCCTCCATGGACGACGTCGTCGCCAAGCTCGAGGAGATCGACGCCAGAGGGAGCCGCG-ACTCGCTGCCGCCGAGGCCA
AGGACTGTCCCGCCGGCGGCACGAAGATCGCCTTACCGCGGTTCCTCCAA------GCCCGCCTGA--------------
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>chr4B_1_TraesCS4B01G325400
CTACTACGGTTGCAATTTCTCCTGCGAAACTTCTTTTTCAAATTATGCAGTTTCATATACGGTTTTTGTTCGGCTACGCA
GATTTTCGACCCGCAAACAAGTTCCGCGTCGAACTGCAAATGCATTTTGCGGGTCGGGATTTTGCGGGGTCTGCTAGAGT
TGCTCTAAGTTACTCCCACTATGACCTAAGTGTGCCAATGCCAGCAAGCAACAAAAGCTGCATTTTTCAACTCCATCCAT
GTAGTTCATCGATTGTACCTCGTGTATGTACTCCCTCCGTTCCAGATTCTAGTGCGTATAGTTTTTTGGCTTCGATTCCG
ATATGTAGTGCGCATAAGCGCTGTGAAGCTGCTTTGGACGAAATAACCCTCAACTGGTTCACGGCAGTGCAGCAGCAGGT
ACCCACGTGCGTGACAGACCAAGCAGGGGGGGGGGGGGTAATTCTTGTCCAAACAAAGACGCCAGCTCATACATTGGTAT
AAGTGCCCCAGCCAAAGGCGCACTATAAAGAGGAATGGAGGGAGTATTAGTTAGTCCCAGCTGTCCATGTTCATCT-GGG
TTGGC-GCTCTCTGGCACTACTGGCCAGCGCATGAGCTGGGTTTCACATTTAGTTTC---AAAAAAAATTCAGCACCAAC
CGAAATCACCGAAATTCAGTGATTTTGGCCAACGCTTGAATTCAATTAAATGTTTGAAATTTGTAAACTATTTTAAAAAA
CATTTGAATTCATGTGTACTAGTGAAATTGCTGAAATATTTGGGTCAAAAGGTAAATATTTGAGTGTCTACTGAAATTAT
TAAATTCAGTGAATCTGATTGGAATTTCACTGAAATTGAAAACCTCACCGGCGTGTTGTGCTAACGTGGCAACTCGTTTT
TTTGTGTATGGCAAGC--GCAGTCGGAGGTGAACTTCCTGGGGCGGCTGCAGCACCCGAACCTGGTGAGGCTGCTGGGCT
ACTGCGGCGACGGCGACGACCGCGACCTCCTCCTCGTCTACGAGTTCATGCCCAAGGGCAGCCTCGAGAACCACCTCTTC
CGAAGTACGTAATCCACTCCACCATGC-ATGCATCCATCGCCATTGATCGATCTCGATCCATCCACACGCCGCACTTTGC
TCTTCGCTGACCATGATGCATTCT---CATGGCGCAGGGGGCGGCTCGTTCGAGCCGCTGTCGTGGGCGACGAGGCTGAA
GATCGCCGCCGGGGCCGCGCGGGGGCTGGCGTTCCTGCACTCGCCGGAGACGCAGATCATCTACCGGGACTTCAAGGCGT
CCAACATCCTCCTCGATCACGACTTCGCCCCCAAGCTGTCCGACTTCGGGCTGGCCAAGAGCGGGCCGGCGGCGGGGCGG
TCGCACGTCACCACGCGGGTCATGGGCAGCTACGGCTACGCGGCGCCCGAGTACGTCGCCACGGGCCACCTCTACGTCAA
GAGCGACGTCTACGGCTTCGGCGTGGTGCTGCTGGAGCTGCTCACGGGGCTCCGCGCGCACGACCCCAACCGGCCCAGCC
ACCAGGCCAACCTCGTCGAGTGGGCGCGCCCCTACATCGCCGGCGGCAGGAAGCTCACGGGGCTCATGGACCAGCGCCTC
GCCGGTCAGTACCCGCCCAAGGCGGCGCTCCGGGCCGCCAGGCTCGCGCACCGCTGCCTCTGCGGCGACCCCAAGGCCCG
GCCCTCCATGGACGACGTCGTCGCCAAGCTCGAGGAGATCGACGCCAGAGGGAGCCGCG-ACTCGCTGCCGCCGAGGCCA
AGGACTGTCCCGCCGGCGGCACGAAGATCGCCTTACCGCGGTTCCTCCAA------GCCCGCCTGACGACGAAGTGATCG
AAA---CTGTTAACG-ACGCTCTTTCATTATTTG--------TTTCTTTGTTAGCTAGGCAGTCTTTTGTAGCTTGATAC
TTGCATCTGATTTATCCTTTTGGTTAACTACTACTAGTACTAGTAGGTTTTACTGCCCCACTTGTGGCTTTGTATTATTG
TATACTTTTTTGACTTGAAATATGAAACGACCGA---C--ATTTCGATGCACATTCAGAGAGAAAAAGAAGAA-AAGAAA
CATCAGTCTATAAAGCAATCACATACGGTTGCATACAGGTTCT-GATTTCTGAAGCAAA-TGTACAGCTGTAAATTTGAT
GCTAGTAATTTTACCTCC------------AAAAACTCTAGCATTCCATTGTTCTCAAAGAAAAAAAATATGAGAAAAGG
AAAACATCTT----------------TATGCACCATTGACGGCCTGAAGCTGTGTCTAGGAGTCTAGACGGCTCC-TGCC
TTACACATGACCAACGCTGCGAAAAAGCCTTCACTGATCTGGAACAAGCAGGATTGCAGTTT-CGACATGAGAGATGAGC
TTGATCGATGAATGCATTCTTACTGTCAGCTAAACAATCCGACTGCTCATATCATACTCATCTGCAATATGTGGATGCAA
GTAAGATCAGTTAACCGTGCCATCGGATTTTACAAGGGAAATGATTTATA---TTTCTGAAAAGAAAATTCAGTCCAGCA
ATACTTACACAAGAGAGAAGGCATTTCAGCGCCGTAAAGGATGCATCTTCGTGG--------CGCTCAAACTGACCCGTG
AAGGCACGAGACATAATTCTCTCAATTCCACGGCGC----ATGCCTTCAAGCAAGCTTTCGAATGTTTGAAACCTTGAAG
GTGCTTCAGAATTGCAAGACGGTTCAAACAAGCCCAGAAAGAACTTACATTTGCCAGGTAACCTGAACATGAGTTCTAGA
CCTAATGCGAAGCTTCATTT-CGACAAATTCCTATTCTTCCCTATTCTGTACACTAGTTTGGTAACTGTGGTAAACGAGT
TTCCCTATGGCC
>chr5A_502
ACTAAAAAGAAACGA-----------------------------------------------------------------
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--------------------------------------AGGGAGTATTAGTTATTCCCAGCTGTCCATGTTCATTTTGGG
TTGTGTGCTCTCTGGCACTACTGGCCAGCACATGAGCTGGGTTTCACCTTTAGTTTC---AGAAAAATTTCAGCACCAAT
CGAAATCACCGAAATTCAGTGATTTCCACGAACGCTTGAATTCAGTTAAATGTGTGAAAATTGTAAACTATTTTGAAAAA
TACTTGAATCCATGTGTACTACTGAAATTGCTGAAATATTTGGGTCGAAAGGTAAATATTTAAGTGTCTACTGAAATTAT
GAAATTCACTTAATTTCATGGTAATTTCACTGAAATTGAAAACCTCACCGGCGTGCCGTGCTAACGCGGCAACTTGTGTT
TTTTTGTGTATGGCAAGTGCAGTCGGAGGTGAACTTCCTGGGGCGGCTGCAGCACCCGAACCTGGTGAGGCTGCTGGGCT
ACTGCGGCGACGGCGAGGACCGCGACCTCCTCCTCGTCTACGAGTTTATGCCCAAGGGCAGCCTCGAGAACCACCTCTTC
CGAAGTACGTAATCCA-TCCACCATGCAATGCATCCATCGCCATTGGTCGATCTCGATCCATCCACACGCTGCACTTTGC
TCTTCGCTGACCTCTCCTCGATCCATGCATGGCGCAGGGGGCGGCTCGTTCGAGCCGCTGTCGTGGGCGACGAGGCTGAA
GATCGCCGCCGGCGCCGCGCGGGGGCTGGCGTTCCTGCACTCGCCAGAGACGCAGATCATCTACCGGGACTTCAAGGCGT
CCAACATCCTCCTCGACCACGACTTCGCCCCGAAGCTGTCCGACTTCGGGCTGGCCAAGAGCGGGCCGGCGGCGGGGCGG
TCGCACGTCACCACGCGGGTCATGGGCAGCTACGGCTACGCGGCGCCCGAGTACGTCGCCACGGGCCACCTCTACGTCAA
GAGCGACGTCTACGGCTTCGGCGTGGTGTTGCTGGAGCTGCTCACGGGGCTCCGCGCGCACGACCCCAACCGGCCCAGCC
ACCAGGCCAACCTCGTCGAGTGGGCGCGCCCCTACATCGCCGGCGGTAGGAAGCTCACCGGGCTCATGGACCAGCGCCTC
GCCGGCCAGTACCCGCCCAAGGCGGCGCTCCGGGCCGCCAGGCTCGCGCACCGCTGCCTCTGCGGCGACCCCAAGGCCCG
GCCCTCCATGGACGACGTCGTCGCCAAGCTCGAGGAGATCGACGCCAGAGGGAGCCGCG-ACGCGCTGCCGCCGAGGCCG
AGGCCCGTCCCGGCGACATCACAAAGGTCGCCGTACCGCGGTTCATCCAA------GCCGGCCTGACGACGAACTGATAA
TTCCATCTGTTAACGAATGGCCTTTGATGATTAATTTCTTGATTTCTTTGTTCGCTAGTCAGTTTTGTTTCGCTTCATA-
TACTTGCCTTTGAATTACTAGGTC---------------------------ACTGCCGAACTTGTGGCTTTGTATTCTTG
TGTACTTTGTCTAGTAGGAGTAACAAAAAATGGCAGGC--ATTTCGATGCACATTCAGAGAAAAAAGAAAGGAGAAGAAA
CATCAGTCTATAA-GCAATCACAGACTGTTGCATACATGTTATGGATTTCTGAAGCAAGGTGTACAGGTGTAATCCCGAG
TA-ATTATTATACAAAAGTAATACCACCAAAAAAACTCTAGCATTCCGTTGTTCTCAAACAAAAAAAG-G-GAGGAAAAT
AAAACATCTCCTATCATCCTATTATGCATGCACCATCGTCGGCCCGAGGT--TGTCTAGGAGTCTAGACAGCTCCCTGCC
TCACACATGAGCAG-----------------CACTGATCTTGAATCAGCAGGATTGCATTTTTCGAGACCAGAGATGAGA
TTGATGGACGCATGTATTCTTACAGCGAGCAAAACAATCCGAGTGCACTCATCTGCA--------AATATGTGGATGCAA
GTAAGATCAGTTAACCGTGCCATCGAATTTTACAAGGGAAATGATTTATACTATTTCTGAAAAGAAAATTCAGTCCAGCA
ATACTTACACAAGCGAGAAGGCGTTTCAGCACCGTAA-GGATGCATCTTCGACTCTTCATGACGCTCAAACTGACGCGTG
AAGGCAGGAGACATAATTCTCTCAATTCCACAGCGC----ATGCCTTCAAGCAAGCTTTCGAATGTCTGAAACCTTGAAG
GTGCTTCAGAATTGCAAGACGGATCAAACAAGCCCAGAAAGAACTTACATTTGCCAGGTAACCTGAACATGAGTTCTAGA
CCTAATGCGAAGCTTCATTT-CGACAAATTCCTATTCTTTCCTATTCTGTACACTAGTTTGGTAACTGCGGTAAACGAGT
TTCCCTATGGC-
>chr4D_534
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-----------------------------------------------------GTCCCAGCTGTCCATGTTCATTT-GGG
TTGTGTGCTCTTTGGCACTACTGGCCAGCGCATGAGCTGGGTTTCACTTTTAGTTTAAAAAGAAAAATTTCAGCACCAAC
GGAAATCATCGAAATTCAGTGATTCTGGCCAATGCTTG-----AGTTAAATGTTTGAAATTTGTAAACTATTTTGAAAAA
TATTTTAATTCATGTGTACTA---------CTGAAATATTTGGGTCGAAAGGTAACTATTTGAGTGTCTGCTGAAATTAT
GAAATTCAGTGAATTTCATTGGAATTTCACTGAAATTGAAAACCTCACCGGCGTGCTGTGCTAACGTGGCAACTTGTTTT
CTTTTGTATGGCACAAGTGCAGTCGGAGGTGAACTTCCTGGGGCGGCTGCAGCACCCGAACCTGGTGAGGCTGCTGGGCT
ACTGCGGCGACGGCGAGGACCGCGACCTCCTCCTCGTCTACGAGTTCATGCCCAAGGGCAGCCTCGAGAACCACCTCTTC
CGAAGTACGCAATCCACTCCACCATGC-ATGCATCCATCGCCATTCA------TCGATCCATCCACACGCTGCACTTTGC
TCTTCGCTGACCTCTCCTCGACCCATGCATGGCGCAGGGGGCGGCTCGTTCGAGCCGCTGTCGTGGGCGACGAGGCTGAA
GATCGCCGCGGGCGCGGCGCGGGGGCTGGCGTTCCTGCACTCGCCGGAGACGCAGATCATCTACCGGGACTTCAAGGCGT
CCAACATCCTCCTCGACCACGACTTCGCCCCCAAGCTGTCCGACTTCGGGCTGGCCAAGAGCGGGCCGGCGGCGGGGCGG
TCGCACGTCACCACGCGGGTCATGGGCAGCTACGGCTACGCGGCGCCCGAGTACGTCGCCACGGGCCACCTCTACGTCAA
GAGCGACGTCTACGGCTTCGGCGTGGTGCTGCTGGAGCTGCTCACGGGGCTCCGCGCGCACGACCCCAACCGGCCCACCC
ACCAGGCCAACCTCGTCGAGTGGGCGCGCCCCTACATCGCCGGCGGCAGGAAGCTCACCGGGCTCATGGATCAGAGGCTT
GCCGGCCAGTACCCGCCCAAGGCGGCGCTCCGGGCCGCCAGGCTCGCGCACCGCTGCCTCTGCGGCGACCCCAAGGCCCG
GCCCTCCATGGACGACGTCGTCGCCAAGCTCGAGGAGATCGACGCCAGAGGGAGCCGCGGACTCGCTCCCGCCGAGGCCG
CGGCCCGTCCCGGCGGCAGCACAAAGGTCGCCGTACCGCGGTTCCTCCAACTCCAAGCCGGCCTGACGACGAACTGATAA
TTCCATCAGTTAACGAACGGTCTTTCATTAGTTTCTGA---ATTTCTTTGTCAGTTAGGCAGTTTTGTTTTGCTTTATAC
TACTTGATTTTGAATTACTAAGTC---------------------------ACTGCCGCACTTGTGGCTTTGTATTCTTG
TGTACTTTGTCTAGTA------ACACAAAATAGCAGGCATATTCCAATGCACATTCAGAGAAAAAAGAA----GAAGAAA
CATCAGCCTATAA-GCAATCGCAGACTGTTGCATACAGGTTATGGATTTCTGAAGCAAGGTATACAGGTGTAATCCTGAG
AGTATAATTATACAAAAAGATTACCACC-AAAAAACTCTAGCATTCCATTGTTCTCAAACAAAAAAAAAG-GAGGAAAAT
AAAACATCTCATATCATCCTATTATGTATGCACCATCGTTGGCCAGAGGC--TGTCTAGGAGTCTAGACGGCTCCCTGCC
TTACACATGACCAACGCTGTGAAAAAGCCTTCACTGATCTGGAACAAGCAGGATTGCATTTT-CGACATGAGAGATGAGT
TTGATCGATGAGTGCATTCTTACTGTCAGCTAAACAATCCGAGTGCTCATATCATACTCATCTGCAATATGTGGATGCAA
GTAAGATCAGTTAACCATGCCATCGAATTTTACAAGGGAAATGATTTATACTATTTCTGAAAAGAAAATTCAGTCCAGCA
ATACTTACACAAGAGAGAAGGCATTTCAGCACCGTAAAGGATTCATCTTCGTAC--------CGCTCACACTGACGCGTG
AAGGCATGAAACATAATTGT-TCAATCACACAGCGCATGGATGCCTTCAAGAAAGCTTTCAATG--TTGAAACCTTGAAG
GTGCTTCAGAATTGCAAGACGGATCAAACAAGCCCAGAAAGAACTTACATTTGCCAGGTAACCTGAACATGAGTTCTAGA
CCTAATGCGAAGCTTCATTTTCGACAAATTCCTATTCTTTCCTATTCTGTACACTAGTTTGGTAACTGCGGTAAACGAGT
TTCCCTATGGC-
>SNPs
SSSSS-SS-SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------S-----
---SS------------------------------------------S-------------S-----S------------
--------------------------------------------S-----------------------------S-----
S--------------------S------------------------S---------------------------------
S-------------S-S--------------------------------------S------------------S-----
---S---------SSS----------------------------------------------------------------
----------------S---------------------------------------------------------------
----------------------------------------------------------------------S---------
------------SSSSSS-SS--S--------------------------------------------------------
------------S-------------------------------------------------------------------
----------------S---------------------------------------------------------------
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----------------------------------------------------------S---------------------
-----S--------------------------------------------------------------------------
-------------------------------------------------------------------------------S
---S-S------S----S----S---S-----S--------------------------S-------------S----SS
SSS----------------S-------------S-----------------------------S--S-S-S----S----
-SSSSS--SS-SS--SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------------------S---
-S------S-SS-S-S-S-S--SS---SS-SS-S---------------------------S----SS---S--------
-------------S---------S--S--------------S----------------S--------S-----SSS---S
SS--S--S-S-SSSSSSS-----------------------------------------S--------SSS---S---SS
---------S--------------------------S-S-----S--S--SS----------------------------
-------------------S--------------------------------------S--------------------S
------------------------------------------S-------------------------------------
-------------------------S------------------------------------------------------
------------------------------S---------------------SS---------------------S----
------S------------------------S------------------------------------------------
----------------------S---------------------------------------------------------
---------------------------------------S----------------------------S-----------
-----------S
>forward_159
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-----------------------------------------------------------TTTTGCGGGGTCTGCTAGAG-
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>reverse_1135
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--------------GATGCATTCTCATGGCGCAG----------------------------------------------
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>forward_359
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-------------------GCTGTGAAGCTGCTTTGGAC-----------------------------------------
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>reverse_2250
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---------TTATGCACCATTGACGGCCT---------------------------------------------------
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