>input_sequence_68236
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---------CCTCTCGAGTCTCCTCCCTCGCCTCCCCCGTCCCCTTCCCCTTCCCCCTCTCGGATCCGACCCCCCGCGGC
CCGCCCCTCGCCGCCGGCGACCATGTCCAAGTACGGCACCATCCCCAC--------------------------------
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----CTCCTCCTCCGCCGCCGCGGGGGCGCCTCACCTCGGCGGCGCCTCCCCGCTCGACTTCATCTCCCGCGCCAAGGCC
CGCGGCGCGACGGCGCTGGCCACCCGCCGGCCATGGCGCGAGCTCGCGGACGTGCACGCCGTCGGGCTGCCCCCGAGCCT
CGGCGACGCCTACCTGCGCGTGCGCGCCAACCTCGCCCACTTCGCCATGAACTACGCCATCGTCGTCCTCGTCGTCGTCT
TCCTCTCCCTCCTCTGGCAGCCCATCTCCCTCATCGTCTTCCTCGTCTGTATGGTCGGCTGGCTCGTCCTCTACTTCCTC
CGAGACGAGCCCATCGTCCTCTTCGGCCGCGTCGTCGGCGACGGCGTGGTCCTCGCCGTGCTCGCTGCTGTCACGCTCAT
CCTCCTGCTGCTCACCGGCGCCACCACCAACATCCTCACGTCGCTGCTCATCGGCTTCGTGCTCGTCGTGGTGCACGCCG
CACTGCACAAGGCGGAGGACAACGTTGACGAAGAAGTCGGCCGCTGGTACGCGCCGGTGCCAGCGCAGTAGTGTGAGATC
GCTCGCCCTCCAACTCTTGGTTCGTGGTCCGTCCATATTATTGTTCAGTCCCGTGTATGCATTTCGGTTCTTCCCACTGC
TGGATGGTGTACAATTTGTCAATGTGTTCTTGCTGTGCTATTGTCGTTCCTGAA--------------------------
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>chr3B_1_TraesCS3B01G122600
GATGCAGATATCTAGTGACGCCATGCGCCAAGAGCTGAGATCTCCGAGAGGAAGACCAGAACTCGTCGCTGTCTAGATCG
AGGAGGCCGAAGCAGATCAAAGTTTCGAAGATCGAAGAACAACAGGGCCAAAACCCAGGCGGGCTCCCCTGGACCCCGAT
GGACTAGATCTGGGCAGTAATCCCGCCGGCCGCTGCCGCAACCAGCTCTCCACAACCGGAATGAAGAACCGAAGACTGGT
TGCCTCTGAGCTCTGCCCTGGCGCCGTCACGCCCTAACCCAACGCTGGGCCCCCGCCCAAGATCGCTGTCCCGTGTCGAA
CCCCCACACCTGGAGAGGAGAGAGGGCCCCGCCGCACACCCTACCCCTATGAGCACCTTGAAGAGACTGAGCCAGCATAT
CATCTTGAGTTTTGCAAAGTCACCATAGGCATCTCGTAGTCGACGAGAACGTCTCCTCTCACTGAAAGGGTATCGCCGAA
AATTCTAAAATAAATCAAAAAAAATGCGAGCATCAGTACTTAAACTCTCATGCGA-----------------------AT
ATCATCTTGAGTTTTGCAAAGTCAACATAGGCATCTCGTAGTCGACGAGAACGTCTCCTCTCACTGAAAGGGTATCGCCG
AAAATTCTAAAATAAATCAAAAAAAATGCGAGCATCAGTACTTAAACTCTCATGCGCTCGGAATACCACTATCCTTTTAT
GGTTTTACCATCCAACCACATGTTGATTCGATACTACCCTGAGAATTGATCAACAGAGAAGTTCTCTCAAAAAAGAAATT
TCCAAACACCGGCACCGGTAGCGATGATAACATTGTTTTCTTTGTTCCATACGGTGGTGAAATTCGGGGAAATCGCGA--
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----------------------ATTTACAAAACAGGGGCTGTCGCCGTCTAGAATGCCCTCGAAATTCACGTCGCCGTGT
CGTGTAACAGGAACCAATCCAGCACGGCAGCGTTCCCCACCCTCGCGTCGCAT--CCCAATTCGTTAATCCCATCGCCCT
TGCCCGATCCCTCTCGAGTCTCCTCCCTCGCCTCCCCCGTCCCCTTCCCCTTCCCCCTCTCGGATCCGACCCCCCGCGGC
CCGCCCCTCGCCGCCGGCGACCATGTCCAAGTACGGCACCATCCCCAC--------------------------------
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----CTCCTCCTCCGCCGCCGCGGGGGCGCCTCACCTCGGCGGCGCCTCCCCGCTCGACTTCATCTCCCGCGCCAAGGCC
CGCGGCGCGACGGCGCTGGCCACCCGCCGGCCATGGCGCGAGCTCGCGGACGTGCACGCCGTCGGGCTGCCCCCGAGCCT
CGGCGACGCCTACCTGCGCGTGCGCGCCAACCTCGCCCACTTCGCCATGAACTACGCCATCGTCGTCCTCGTCGTCGTCT
TCCTCTCCCTCCTCTGGCAGCCCATCTCCCTCATCGTCTTCCTCGTCTGTATGGTCGGCTGGCTCGTCCTCTACTTCCTC
CGAGACGAGCCCATCGTCCTCTTCGGCCGCGTCGTCGGCGACGGCGTGGTCCTCGCCGTGCTCGCTGCTGTCACGCTCAT
CCTCCTGCTGCTCACCGGCGCCACCACCAACATCCTCACGTCGCTGCTCATCGGCTTCGTGCTCGTCGTGGTGCACGCCG
CACTGCACAAGGCGGAGGACAACGTTGACGAAGAAGTCGGCCGCTGGTACGCGCCGGTGCCAGCGCAGTAGTGTGAGATC
GCTCGCCCTCCAACTCTTGGTTCGTGGTCCGTCCATATTATTGTTCAGTCCCGTGTATGCATTTCGGTTCTTCCCACTGC
TGGATGGTGTACAATTTGTCAATGTGTTCTTGCTGTGCTATTGTCGTTCCTGAACATGAATGCAAAGAATGATGCTTATC
TTCCCGAATTTTACCTGTGTAGTTGATTGCTGTGAGCAGCTGAGTGTGCAATTGGGTCTCAAACAGTCACGGTCATGCTA
AGCGTTCAGTTTGTTTGTCATATAAATTACCTGGTCAGGCAGATTCCTTTTTTGTTCCGTGGGTAATCGAGATGTTGCCT
TTACAAAGTGAGATTGAGACGTCTTGCAGTTCCAGAAGTCCCTTAAACTGCATTGTACCTGGCTTTTCACTAACTTTTAG
AAAGGAAGAAAAGAGATATCTAAATGGTGGTTGGTCTAAAATATCTCTAAATGTATCTGCTAGCTCTGCCAGAATTTCAT
AAATGGTTCAGTGAATGTAGTTTGATTGACAGAGTTTGCGGTATAC------GTTGTCACTATCAGGCTGTCCAATCTGA
TAAAAATAGTTTTAGCAATCATATCATCTCTTTACACCCTGTAACCATAGTGTAGTTCCCTGTTTATAGTTGCGGATCGT
GTATCTATGTGCTTGTTTTTCACGGAGGGCAGAATCATTGTAAGTGCCAGCCAGAAGAAGACGGATATATGCAATTTGGA
AATAATCCGAGAGACAACCCTGGCCTGACAGGCCCTACACTAAGAGTCTTCTGGAAGTAGTGGGAGGCAATTCCTTGCCC
ACTGCTCTTCCCACCAGGGAGGTACAGCTAACTAGCAATTGAATTGAGTTAGCTTAGCTGTTTGTTGGGTGCAGAGTATT
TTAAACTTTGAAATCTGAAGGAATCTTAGTTTTAGAGCTCAATCATCATGCCGTAAAATTCATTTTGGTGGTTGGTACTT
GCACCACACTTCTGAAGGGTCTGTATTTTGCAGTTTCTTTTTTGAGTTGCTGTGTATTCTTTCTAGACTTAGTAA---TC
ATCCTTACGATTATTTAGAGGAACAAATTTCTGTAGTTACAGTTTTACGATTTTACTTAATTTGATGGCAACGTGAGTAA
ATTATTTCACTTGTTTCTCAAGT
>chr3A_1
GATGCAGATATCCAATGACGCCATGCGCCAAGAGCCGAGATCTCTGACAGGAAGACCGAAACTCGTCGGCGTCCAGATCG
AGGAGGCCGGAGCAAATCGAAGTTTTGAAGATCGAAGAACAGCAGGGTCAAAACACAGTGGGGATCCCCTGGATCCCAAC
GGGCTAGATCTGGGCAGTGCTCCCGCCGGCCGCCGCCGCGACCAGTCCTCCACAACCAGGATGAAGAACCGAAGACTGCC
TGCCTCCGAGCTCCGCCCCAGT--------------------------GCCTCCACCTGAGATCGTTGGCCGGCATCGAA
CCACCACACCTGGAGAGGAGAGAGGGCCCCGCCGCACACCCTACCCCTA--AGCACCTTCAAAAGGCTGAGCCAGCATAT
CATCTTGAGATTTACGGAGTTATCATAGGCGTCTCGAAGTCGACGAGAACGTCTCCTCTTACTGAACGGGCATCATCGAT
CGAACCTCCACACTCGGAGAGGAGAGAGGGCCCCGCTGCACACCCTACCCCTGAACATCTTTGAGAGACTGAGCTAGCAT
ATCATCTTGAGATTTACGAAGTCATCATAGGCGTCTAGTAGTCGACGAAATCTTCTCACCGAACAGAC-----ATCGCCG
AAAATTCTGAAGTAAATTCAGAAAAATATGAGCTGAG-------------------------ATACCACTATTCTTCTA-
------ACCATTCAACTCCATGTTGATTCGCTACTACCATGAGAATTTATCGATAGAGAAGT----------------TT
TCCGAACACCGGCACCGGTAGCGATGATAACATTGTTTTCTTTGTTCCATACGGTGGTGAAATTCGGGGAAATCGCGA--
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----------------------ATTTACAAAACAGGGGCCGTCGCCATCTAGAATGCCCTTGAAACTCACGTCGCCGTGT
CGTGTAACAGGAACCCATCCAGCACGGCTGCGTTCCCCACCCTCGCGTCGCATCCCCCAATTCGTTAATCCCATCGCCCT
TGCCCGATCCCTCTCGAGTCTCCTCCCTCGCCTCCCCCGTCCCCTTCCCCTCCCCCCTCTCGGATCCGCCCCCCCGCGGC
CCGCCCCTCGCCGCCGGCGACCATGTCCAAGTACGGCACCATCCCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
CCTCCTCCTCCTCCGCCGCCGCGGGGGCGCCCCACCTCGGCGGCGCCTCCCCGCTCGACTTCATCTCCCGCGCCAAGGCC
CGCGGCGCGACGGCGCTGGCCACGCGCCGGCCGTGGCGCGAGCTCGCGGACGTGCACGCCATCGGGCTGCCCCCGAGCCT
CGGCGACGCCTACCTGCGCGTGCGCGCCAACCTCGCCCACTTCGCCATGAACTACGCCATCGTCGTCCTCGTCGTCGTCT
TCCTCTCCCTCCTCTGGCAGCCCATCTCCCTCATCGTCTTCCTCGTCTGCATGGTCGGCTGGCTCGTCCTCTACTTCCTC
CACGACGAGCCCATCGTCCTCTTCGGCCGCGTCGTCGGCGACGGCGTGGTCCTCGCCGTGCTCGCTGCTGTCACGCTCAT
CCTCCTGCTGCTCACCGGCGCCACCACCAACATCCTCACGTCGCTGCTCATCGGCTTCGTGCTCGTCGTGGTGCACGCCG
CCCTGCACAAGGCGGAGGACAACGTTGACGAAGAGGTCGGCCGCTGGTACGCGCCTGTGCCAGCGCAGTAGTGTGAGATC
GCTCGCCCTCCAACTCTTGGTTCGTGGTCCGTCCATATTATTGTTCAGTCCCGCGTATGCATTTCGGTTCCTCCTACTGC
TGGATGGTGTACAATTTGTCAATGTGTTCTTGCTGTGCTATTGTCGTTAATGAACATGAATGCAAGTGATGATGCTTATC
TTCCCGAATTTTACCTGTGTAGTTGATAGCTGTGAGCAGCTGAGTGTGCAATTGGGTCTCAAACAGTCACGGTCATGATA
AGTGTTCAGTTTGTTTGTCATATAAATTACCTGGTCAGGCAGATTCCCTTTTGGTTCCATGGGTAATTGAGATGTCGCCT
TTACAAAGTGAGATTGAGACGTCTTGCAGTTCCAGAAGTCCCTTAAACTGCATTGTACCTGACTTTTCACTAACTTCTAA
AAAGGAAGAAAAGAGATATCTAAATGGTAGTTGGTCTAAAATATCTCTAAATGTATCTGCTAGCTCTGCCAGAATTTCAT
AAATGGTTCAGTGAATGTAGTTTGATTGACAGAGTTTGGGGTATGGCAAGCAGTTGTCACTATCAGGCTGTCCAATCTGA
TAAAAATAGTTTTAGCAATCATATCATCTCTTTACACCCTGTAACCATAGTGTAGTTCCCTGTTTATAGTTGCGGATCGT
GTATCTATGTGCTTGTTTTTCATGGAGGGCAGAATCATTGCAAGTGCCAGCCAGAAGAAGACGGATATATGCAATTTGGA
AATAATCCGAGAGACAATCCTGGCCTGACAGGCCCTACACTAAGAGTCTTCTGGAAGTAGTGGGAGGCAATTCCTTGCCC
ACTCCTCTTCCCACCAGGGAGGTACAGCTAACTAGCAATTGAATTGAGTTAGCTTAGCTGTTTGTTGGGTGCAGAGTATT
TAAAACTTTGAAATCTGAAGAAATCTAAGTTTTAGAGCTCAATCATCATGCTGTAAAAATCATTTCGGTGGTAGGTACTT
ACACCACACTTTTGAGGGGTCTGTATTTTGCAGTTTCTTTCTTGAGTTGCTGTGTTTTCTTTCTAGACTCAGTAA---CC
ATCCTTGTGATTATTTAGAGGAACAAATTTCTGTAGTTACAGTTTTACGATTTTACTTAATTTGATGGCAACGTGAGTAA
ATTATTTCACTCGTTTCTCAAGT
>chr3D_764
TCA-----------------------------------------------------------------------------
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----------------------------------------------------ATAGAGAAGT----------------TT
TCCAAACACCGGCACCGGGAGCGATGATAACATTGTTTTCTTTGTTCCATACGGTGGTGAAATTCGGGGAAATCGTGAAT
TTACAAAGGGTGCGTTTAGGACACATCTAGATGTGCTCTGCTTATTGCACATCTAAGTAAGTGTATCAAGCATAAACACA
AAAAAAAAGAAAAAGAAAATATCCACAAGGATCTTAATATAAAATCAATAACATAGGATTTAGATGTGCAATACTTATGG
CACGTCTGCTTTAGCAAAACTGATTTACAAAACAGGGGCCGTCGCCGTCTAGAAAGCCCTCGAAATTCACGTCGCCGTGT
CGTGTAACGGGAGGGCATCCAGCACGGCAGCGTTCCCCACCCTCGCGTCGCATCCCA-AATTCGTTAATCCCATCGCCCT
TGCCCGATCCCTCTCGAGTCTCCTCCCTTC----------CCCCGTCCCCTTTCCCCTCTCGGATCCGACCCCCCGCGGT
CCGCCCCTCGCCGCCGGCGACCATGTCCAAGTACGGCACCATCCCCA---------------------------------
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---CCTCCTCCTCCGCCGCCGCGGGGGCGCCCCACCTCGGCGGCGCCTCCCCGCTCGACTTCATCTCCCGCGCCAAGGCC
CGCGGCGCGACGGCGCTGGCCACGCGCCGGCCATGGCGCGAGCTCGCGGACGTGCACGCCGTCGGGCTGCCCCCGAGCCT
CGGCGACGCCTACCTGCGCGTGCGCGCCAACCTCGCCCACTTCGCCATGAACTACGCCATCGTCGTCCTCGTCGTCGTCT
TCCTCTCCCTCCTCTGGCAGCCCATCTCCCTCATCGTCTTCCTCGTCTGCATGGTCGGCTGGCTCGTCCTCTACTTCCTC
CGCGACGAGCCCATCGTCCTCTTCGGCCGCGTCGTCGGCGACGGCGTGGTCCTCGCCGTGCTCGCTGCTGTCACGCTCAT
CCTCCTGCTGCTCACCGGCGCCACCACCAACATCCTCACGTCGCTGCTCATCGGCTTCGTGCTCGTCGTGGTGCACGCCG
CTCTGCACAAGGCGGAGGACAACGTTGACGAAGAGGTCGGCCGCTGGTACGCGCCGGTGCCAGCGCAGTAGTGTGAGATC
GCTCGCCCTCCAACTCTTGGTTCGTGGTCCGTCCATATTATTGTTCAGTCCCGTGTATGCATTTCGGTTCTTCCTACTGC
TGGATGGTGTACAATTTGTCAATGTGTTCTTGCTGTGCTATTGTC--------ACATGAATGCAAGTGATGATGCTTATC
TTCCCGAAGTTTACCTGTGTAGTTGATAGCTGCGAGCAGCTGAGTGTGCAATTGGGTCTCAAACAGTGACGGTCATGTGA
AGTGTTCAGTTTGTTTGTCATATAAATTACCTGGTCAGGCAGATTCCTTTTTTGTTCCGTGGGTAATTGAGATGTTGCCT
TTACAAAGTGAGATTGAGACGTTTTGCAGTTCCAGAAGTCCCTTAAACTGCATTGTACCTGGCTTTTCACTAACTTTTAG
AAAGGAAGAAAAGAGATATCTAAATGGTGGTTGGTCTAAAATATCTCTAAATGTATCTGCTAGCTCTGCCAGAATTTCAT
AAATGGTTCAGTGAATTTAGTTTGCTTGACAGAGTTTGCGGTATGGCAAGCAGTTGTCACTATCAGGCTGTCCAATCTGA
TAAAAATAGTTTTAGCAATCATATCATCTCTTTACACCCTGTAACCATACTGTAGTTCCCTGTTTATAGTTGCGGATCGT
GTATCTATGTGCTTGTTTTTCATGGAGGGCAGAATCATTGTAAGTGCCAGCCAGAAGAAGACGGATATATGCAATTTGGA
AATAATCCAAGAGACAACCCTGGCCTGACAGGCCCTACACTAAGAGTCTTCTGGAAGTAGTGGGAGGCAATTCCTTGCCC
ACTGCTCTTCCCACCAGGGAGGTACAGCTAACTAGCAATTGAATTGAGTTAGCTTAGCTGTTTGTTGGGTGCAGAGTATT
TTAAACTTT----------GAAATCTAAGTTTTAGAGCTCAATCATCATGCTGTCAAAATCATTTCGGTGGTAGGTACTT
ACACCACACTTCTGAAGGGTCTGTATTTTGCAGTTTCTTTTTTGAGTTGCTGTGTATTCTTTCTAGACTTAGTAATAACC
ATCCTTATGATTATTTAGAGGAACAAATTTCTGTAGTTACTGTTTTACGATTTCACTTAATTTGATGGCAACGTGAGTAA
ATTATTTCACTTGTTTCTCAAGT
>SNPs
------------S-S--------------------S--------S--S---------SS---------SS---S------
---------S----S---S------S---------------S-----S------S---SS---S---------S---S-S
--S---------------SS-------------S-----S-----SS----------S-S------------------SS
------S------S----SS-SSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S--SS------S--S--S-SS-----
--S----------------------------------------------SS--------S--S--S--------------
---------S---S-SS---S-S-------S-----S----------------------S------S---S---SS---S
SSSS-SSSS-S-SSSSS-S-SS-SS-S-S--SS-SS-S-SS-SS--SS-SSSSS--------------------------
-----------S---S-S------S-------S---S-----------S-S-S----SS-SS--S--SSSSSS-------
--------S--S-----SS-S------SS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S---S--S
SSSSSS-----S----SS------------S-------S--------S---S-S--------SSSSSSSSSSSSSSSS--
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---------------S----------------------------------------------------------------
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-------------------------------S------------------------------------------------
-----------------------S--------------------------------------------------------
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-------------------------------------------------S------------------------------
--S-----------------------------------------------------------------------------
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-S--------------------------------S---------------------------------------------
--------------------------------------------------------------------------S-----
------------------------------------------------SS---------------SSS------------
---------------------------S-------------------------------------------------S--
--S----------------------------------------------------------------S------------
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--------------------------------------------SS----------------------------------
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----------------------S---------------------------------------------------------
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--------------------S-----S------------------------S------S------S------S-------
S-----------------------------------------------------------------------------S-
-------S------------------------------------------------------------------------
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>forward_70
--------------------------------------------------GAAGACCAGAACTCGTCGCT----------
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>reverse_2395
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--------------------------------------------------------------------------CACTGC
TGGATGGTGTACAA------------------------------------------------------------------
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>forward_90
----------------------------------------------------------------------GTCTAGATCG
AGGAGGCCGA----------------------------------------------------------------------
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>reverse_2628
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-------------------------------------------------------------------CGAGATGTTGCCT
TTACAAAGTGA---------------------------------------------------------------------
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