>input_sequence_68234
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------------------------------------------------ATGCAGGGCGAAGTGG------AGCAGCAGGC
GCCGATGCAGATGGTGCTGCGGGTGAAGCACCCGTCGTCGCTGTCCAGCGGCAGCGAGGAGGCGTCGGAGGGGGAGGGGT
CGTCCAGGTCGGCGCTCTCCGTGTTCAAGGCCAAGGAGGAGCAGATCGAGAGGAAGAAGATGGAGGTCAGGGACAAGGTC
TTCGCGCAGCTCGGCCGCGTCGAGGAGGAGTCCAAGCGCCTAGCATTCATACGACAGGTACCTACCTAGTACTCCTAGCT
AATAGTAGTACTACTCTTCGGTTACGACGT--------------------------------------------------
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---------------------------------AGCCTAAACCATACAGCTCAAACGAAAATGATGTGTTTGTAGGAGCT
GGAAGGGATGGCCGATCCTACGAGGAAGGAGGTGGAATCAATACAGCGGCGGATCGACACCGTCAACCGCCAGCTCAAGC
CTCTCAGCAAGAGCTGCGTCAAGAAGGTGACAAGGACTTCCTGGACGTGACATAGA----AATTCTACTTACTTACTTTC
ACTGCATTCATTATATAT---ATTGACATGTGGATTTTATTGTTGTTGAACTGGGAAAACGAACAAAACAGGAGAAAGAA
TACAAGGAGATTCTCGAGGCGTACAACGAGAAGAGCAAGGAGAAGGCCATACTTGTCAACAGGCTAATAGAGGTG-----
------------------CATCACCTCGTCTTCTTCTTA-----------------------------------------
----------GTTAAATATATCAGCTGCCACATTATTAGTAGTGATCACTTTACTCCGCTCTTCATGTGCAGCTGGTGAG
CGAAAGCGAGAGGATGAGGATGAAGAAGCTTGAAGAGCTCAACAAGACAGTCGATTCACTCTATTAG-------------
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>chr2D_1_TraesCS2D01G290400
TCTTGTCCCAAAGCATCTGCTAGCTAGCATGTTGCCTTCCACTCCAGCTAGTGACCACTGTAGTGGCTGACGGACGACAA
CACGCATCCACCACATCCATACCACAGCATTTGTGTGTCTTC-----CAAGCCTCGCGTTGCAGACGGCTTGTCCCCCTC
GATCGTCTTCCTAGCTAATCCCCAGCTGCCGCAACCCAAAGCTACCTATCTACCAGTACTACGTATGT------------
--------------------------------------------------------------AGTATAGCTTAGCCACTC
AA--------AAGCTATGCCAAAGTGCAAGTGGTGGTACTACCT-------------AAGAAAGAAAGACATACACAATG
AGACATGCATGCGCCGGCTCACCCGAATCACTTCCCCCGCACTGCACT----GGGCTGCACAGTCCGATCCCTGTCGAGA
GCGAG----CGAGAGGAAGAGTTACTTGCACTCGACCCCAGCCAGCC--------AGCCAAGACGGCATGGCAGCTCACC
TAACACGGGCCAACTACAGGTGCAGGGCAGATAG---CAATACAATACGAATATACTACGATCGACATGGTTTCTCTTCT
GTCTAAAGCGATCGTTGGTTGGTTCGGCGCACGTACGAT-----------CGATCACCCGGCCACATGCATGCAAACCAC
TGAAATGATGCT---TTGCGTTCTTTGATTTGAATTTCCTCCGCTTTTGTTTTGTTT---------CCCGGGCCCC----
--TTGCATTGCATTGTGCGACGCAGCCGTTTCACCTCACCCGACCTCCCCTTTTATACTGTACAACAGAATCGACGGATC
GATCGCATTACTGCTTCCGCGGCCATAGTTGCAGCCTGCCTGTTGCGTAGACGATAAGCATGCGACGGCTAAAAGCGACA
AGGACTCGCCGCCGGTTGGTGATAT-----AAGTGGCGGGGAGACGCCCCGGCCGTGAAGACAAGGTATAGGAAGAAGAG
AGAATACCACTGCGCCAACTAGTAGCAACTCAAGAGTCGATTGATTACGTTACGTGAAGTGCG-------------TCGA
TCGATCCCTAGGAAGGAAGGAAGGAAGCAAGCAAGGATAGGA--TAGGATGCAGGGCGAAGTGG------AGCAGCAGGC
GCCGATGCAGATGGTGCTGCGGGTGAAGCACCCGTCGTCGCTGTCCAGCGGCAGCGAGGAGGCGTCGGAGGGGGAGGGGT
CGTCCAGGTCGGCGCTCTCCGTGTTCAAGGCCAAGGAGGAGCAGATCGAGAGGAAGAAGATGGAGGTCAGGGACAAGGTC
TTCGCGCAGCTCGGCCGCGTCGAGGAGGAGTCCAAGCGCCTAGCATTCATACGACAGGTACCTACCTAGTACTCCTAGCT
AATAGTAGTACTACTCTTCGGTTACGACGT--------------------------------------------------
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---------------------------------AGCCTAAACCATACAGCTCAAACGAAAATGATGTGTTTGTAGGAGCT
GGAAGGGATGGCCGATCCTACGAGGAAGGAGGTGGAATCAATACAGCGGCGGATCGACACCGTCAACCGCCAGCTCAAGC
CTCTCAGCAAGAGCTGCGTCAAGAAGGTGACAAGGACTTCCTGGACGTGACATAGA----AATTCTACTTACTTACTTTC
ACTGCATTCATTATATAT---ATTGACATGTGGATTTTATTGTTGTTGAACTGGGAAAACGAACAAAACAGGAGAAAGAA
TACAAGGAGATTCTCGAGGCGTACAACGAGAAGAGCAAGGAGAAGGCCATACTTGTCAACAGGCTAATAGAGGTG-----
------------------CATCACCTCGTCTTCTTCTTA-----------------------------------------
----------GTTAAATATATCAGCTGCCACATTATTAGTAGTGATCACTTTACTCCGCTCTTCATGTGCAGCTGGTGAG
CGAAAGCGAGAGGATGAGGATGAAGAAGCTTGAAGAGCTCAACAAGACAGTCGATTCACTCTATTAGTTAGACGTAATAA
----TAATGTTAATTACCACGCCCGAGAGCTTAATTTCGCTGTGCAATCTCCGTCCGTCCCATGGATTTGA---------
-------ATGTATGTGATCTGTACGTGTCAGCTTGTAACTCACACCATGTCGTGAGCGATTCTTCTTTAATTTTCGCCTT
TCTTCTTGCTTGCTTCCTTGTGATTGACGGGTTTGTTGAGTCCA---TCTTGTTGCACTGTCGTTGTCGAGTAAAACTGA
CGTATTTAAACGAAAGGGACCAAGGAACAAGACTGACAAA-AAAAGGGTGAACATCGCTGGAATTGGTGTCGTGTGTGTT
CATTCATTCTTGGCCAATGTTGATCGTTCATCCATTGTTGTCGTTGTTAGCTAGCGGCAGCTAATAT-----GCTAGAGA
GAGGCCGAGGGGAGGTGCC-CATTGATTCTTCCGTTAGTGCTTATAAGTAGCCCACCTAGTACTGTCCCGAAAAAGGGTG
CTCTTGCAGTTTCCGACTTGAAAGGTCAGCAGCTCAGCACTGTCGATCTTGCAACACCATCAGCACTG-----ATCCTGC
TGGTCAGCAACCACCTGACTGACACCCATAACGAACTGGTGGGTGGCTAGAGCCAGCGGCTACTAACC-GGGGGTTAAAA
CGTCACGTTTAGCAGCGAAACTTCGTCGGATCGACCTAGGTAACATTTAATTAAGCCCCAGGAAAGGAAATGATGAGCGC
TTGCTTCTTGGTAGAA----------------------------------------------------------------
--------------------GACTGACTCATGATGCAGGTGGCTAGCTGGTCCCTGAGTG-----------AGTGAGTGA
GATGGA------GCCATGACTCATGATGCTGATATATAGG--TAGGCGATCGACGAGACAGGCCACATGAACCCCAGGTG
ATTAGTGCACGCAA-----AGGCCCAAGCCATGAAGCCATCTTTTGGCTGGCTCCATGCTCGCCGTCCCGGAGCATGCAT
GGACTGATGAGTGAGTATGGACCAGCTGGTATGTATGGTACC---------ACATTACATCACCGAATAGGCGAATAATG
TCAGTACTTGTGGCTCCAGC
>chr2B_1
TCTTGTCCCATAGCATCTGCTAGCTAGCATGTTGCCTTC-ACTCCAGCTAGTGACCACTGTAGTGGCTGACGGACGACAA
CACGCATC-----------CACCACAGTATTTGTGTGTCTTCCAATCCAAGCCTCGCGTTGCAGACGGCTTGTCTCCCTC
GATCGTCTTCCTAGCTAATCCCCAGCTGCCGCAACCCAAAGCTACCTATCTACGTATCTAGTACTCCCTCAGTAAACTAA
TATAAGAGCGTTTAGATAACTAAAATAGTGATCTAAGCGCTCTTATATTAGTTTACAGAGGGAGTATAGCTTAGCCATTC
AA--------AAGGTACGCCAAACGGCCAAAGTGC-------------------------AAAGAAAGACATATACAAGG
AGACATGCATGCGCCGGCTCACCCGGATCACTTCCCCCGCACTGCACT----GAGCTGCACAGTCCGATCCCTGTCGAGA
GACAG----CGAGAGGAAGAGTTACTTGCACTCGACCCCAGCCAGCCAGCCTGCCAGCCAAGACGGCACGGCAGCTCACC
TAACACAGGCCAACTACAGGTGCAGGGCAGATAGTAGCAATACAATAC-----------GATCGACATGGTTTCTGGCTG
-----AAGCGATCGTTGGTTGGTTCGGCGCACGTACATACGCTCCTCGCGCGATCACCCGGCCACATGCATGCAAACCAC
TGAAATGATGC----TTCCGTCCTTCGATTTGATTTACCTCCGCCTT--TTTTGTTTTGTTTCCTACCCGGGCCCC----
--TA-----GCATTGCGCGACGCAGCCGTTTCACCTCCAT-----TTGCCTTTTATACTGTACGTACAGCAGGATCGATC
GATCGCATTACGAGTTCCGCGGCCAT-GTTGTA-------TGTTGCGTAGACGATAAGCATGGGAGGGCGAAAAGCGACA
AGGACTCGCCGCCGGTTGGTGATATCATATAAGTGGCGGGGAGCCGCCCCGGCCGTGAAGACAAGATATAGGAAGAAGAG
AGAATACTACTACGCCAACTAGTAGCAACTCAAGAGTCGATTGATTACGTTACGTGACGTGCG-------------TCGA
TCGATCCATAGGAAGGAAGGGAGGAAGGAAGGGAGGAAGGATAGTAAGATGCAGGGGGAGGTGGAGCAACAGCAGCAGGC
GCCGATGCAGATGGTGCTGCGGGTGAAGCACCCGTCGTCACTGTCCAGCGGCAGCGAGGAGGCGTCAGAGGGGGAGGGGT
CGTCCAGGTCGGCGCTCTCCGTGTTCAAGGCCAAGGAGGAGCAGATCGAGAGGAAGAAGATGGAGGTCAGGGACAAGGTG
TTCGCGCAGCTTGGCCGCGTCGAGGAGGAGTCCAAGCGCCTAGCATTCATACGACAGGTAGG-------------TACCT
AGGAGTAGTAATACTTTTCAGTTGAGTCATTAATATT-------------------------------------------
----GGAGACCCAAAATGACGTACTCT---------------TGAACGATCAGTTTGTTTCAGCTGAGCCACTG------
AAGTTTGTAACAACAAAAATGATACTGAGATTGAGCCTAAACCATCATAGCTTTGTGTTTGTGT----TTTGTAGGAGCT
GGAGGGGATGGCCGATCCTACCAGGAAGGAGGTGGAATCAATACAGCGGCGGATCGACACCGTCAACCGCCAGCTCAAGC
CTCTCAGCAAGAGCTGCGTCAAGAAGGTGACAAAGACTTCCTGGACGTGA--TAGA----AATTC----TACTTACTTTC
ACTGCATGCATTCGTACGTAAATTGGCATGTGGACTTAATTGTTCTTGAATTGAGAAAACTTACAAAACAGGAGAAAGAA
TACAAGGAGATTCTCGAGGCGTACAACGAGAAGAGCAAGGAGAAGGCCATACTTGTCAACAGGCTAATAGAGGTG-----
------------------CATCACCTCGTCTTCTTCTTGTCTTACTTA--------------------------------
------------TAAATATAT---CTGTCAGGTTAGTAGCATTGATCACTTTACTCGGCTCTTCATCTGCAGCTGGTGAG
CGAAAGCGAGAGGATGAGGATGAAGAAGCTTGAAGAGCTCAACAAGACAGTCGATTCACTCTATTAGTTAGACGTAATAA
----TAATGTTAATTACCACCCCCGAGAGCTTAATTTCGCTGTGCAATCTCTGTCCGTCCCATGGATTTGA---------
-------ATGTATGTGATCTGTACGTGTCAGCTTGTAACTCACACCATGTCGTGAGCGATTCTTCTTTAATTTTCGCCTT
TCTTCTTGCTTGCTTCCTTGTGATTGACGGGTTTGTTGAGTCCA---TCTTGTTGCAGTGTCGTTGTCGA----------
CGTATTTAAACGAAAGGGACCAAGGAACAAGACTGACAAAAAAAAGGGTGAACATCGCTGGAATTGGTGTCGTGTGTGTT
CATTCATTCTTGGCCAATGTTGATCGTTCATCCATTGTTGTCGTTGTTAGCT----GCAGCTAATAT-----GCT--AGA
GAGGCCGACGGGAGGTGCC-CATTGATTCTTCCGTTAATACT--TAAGTAGCCGACCTAGTACTGTCCC-AAAAAGGGTG
CTCTTGCAGTTTCCGATTTGAAAGGTCAGCAGCTCAGCACTGTCGATCTTGCAACACCATCAGCACCG-----ATCCTGC
TGGTCAGCAACCACCTCACTGACACCCATAACGAACTGGTGGGTGGCTAGAGCCAGCGGGTACTAACCAGGAGGTTAAAA
CGTCACGTTTAGCTGCAAAACTTGGTCGGATCGACCTAGGTAACATTTAATTAAGCTCCAGGAAAGGAAATGATGAGCGC
TTGCTTCTTGGTACTCCCTCCGTTCCAAAATAGATGACCCAACTTTATACTAAAGTTAATACAAAGTTGAGTCATCTATT
TTAGAACGGAGGGAGTAGATGACTGACTCATGATGCAGGTGGCTAGCTGGTCCCTGAGTGCTGAGTGAGTGAGTGAGTGA
GATGGAGGGGTAGCCATGACTCATGATGCTGATACATATAGATAGGCCATCGACGAGACAGGCCACATGAACCCCAGGTG
ATTAGCGCACGCAAATTAAAGGCCCAAGACACGAAGCTAGCTATCTTTTGGCTCCATGCCGGA-------------GCAA
GGACTGA----TGAGTATGGACCAGCTGGTATGGTG----------TGGTGACATTACATCACCGAATAGGCGAATAATG
TCAGTACTTGTGGCTCCAGC
>chr2A_3
--TTGTCCCAGAGCATCTGCTAGCTAGCATGTTGCCTTCCACTCCAGCTAGTGACCACTGTAGTGGCTGACGGACGACAA
CACGCATCCACCACGTCCACACCACAGTATTTGTGTGTCTTCCAATCCAAGCCTCGCGTTGCAGACGGCTTGTCCCCCTC
CATCGTCTTCCTAC----TCCCCAGCTGCCGCAACGCCTTTCTAGCAC--------------------------------
----------------------------------------------------------------TATAGCTTAGCCACTC
AACTCAAAATAAGCTGCGCCCAAGTGCAAGTGGTGGTACCTAAGAAAGAAAGAAAGAAAGAAAGAAAGATATGCACAAGG
AGACATGCATGCGCCGGCTCACCAGAATCACTTCCCCCGCACTGCACTGATCGAGCTGCACAGTCCGATCCCTGTCGAGA
GCGAGCGGTCGAGAGGAAGAGTTACTTGCACTCGACCCCAGCCAGCCAG--------CCAAGACGGCATGGCAGCTCACC
TAAC----GCCAACTACAGGTGCAGGGCAGATAGTAGCAATACAATACGAATA---TACGATCGACATGGTTTCTCTTCT
GTCTAAAGCGATCGTTGGTTGGTTCGGCGCACGTACGA-------------GATCACCCGGCCACATGCATGCAAACCAC
TGAAATGATGCATGCTTCCGTCCTTTGATTTGAATCACCTCCGCTTTTGTTTTGTTTTGTTTCCCGGCCGGGCCCCCTTG
CATTGCATTGCATTGTGCGACGCAGCCGTTTCACCTCACT-----TCCCCTTTTATACTGTACAGCAG--------GATC
GATCGCATTACTAGTTCCGCGGTCAT-GTTGCAGCCTGCCTGTTGCGTAGACGATAAGCATGCGACGGCGAAAAGCGACA
AGGACTCGCCGCCGGTTGGTGATAT-----AAGTGGCCGGGAGCCAA------------------------GAGGAAGAG
AGAATACTAC---GCCAACTAGTAGCAACTGAGGAGTCGATTGATTACGTTACGTGCGTCGAGCGAGGGGTGCCGATCCA
TCCATCCATACCTAGGAAGGAAGGAAG--------------------GATGCAGGGGGAGGTGG------AGCAGCAGGC
GCCGATGCAGATGGTGCTGCGGGTGAAGCACCCGTCGTCGCTGTCCAGCGGCAGCGAGGAGGCGTCGGAGGGGGAGGGGT
CGTCCAGGTCGGCGCTCTCGGTGTTCAAGGCCAAGGAGGAGCAGATCGAGAGGAAGAAGATGGAGGTCAGGGACAAGGTC
TTCGCGCAGCTCGGCCGCGTCGAGGAGGAGTCCAAGCGCCTAGCATTCATACGACAGGTAAAC-----------------
--------TACTCTTCTTCGGTTAGTAATACTACTAGCCAAGTGTAAGTAGTACTAACGGCCGATCGCTTCATGGCATTA
ACTAGGAGACCCAAAATGACGTATACTAGTACAGTACCAACATGCATGATCAGTTTGTTCAGCCCAGTCGGGGAACTAAT
AACTCTGTAACAAGAAAAATGATATAGCTTTGTTTTGT-------------TTTGTGTTTGTTT----TCTATAGGAGCT
GGAAGGGATGGCCGATCCTACGAGGAAGGAGGTGGAATCAATACAGCGGCGGATCGACACCGTCAACCGCCAGCTCAAGC
CTCTCAGCAAGAGCTGCGTCAAGAAGGTGACAAGGACTTCCTGGACGTGA--TAGCTAGGAATTC----TACTTACCTTC
ACTGCATTCATTATATGT---ATTGACATGTGGATTCTATTGTTCTTGAATTGGGAAAACGAACAAAACAGGAGAAAGAA
TACAAAGAGATTCTCGAGGCGTACAACGAGAAGAGCAAGGAGAAGGCCATACTTGTCAACAGGCTAATAGAGGTGACCTG
ACCTCAACATCATGCATGCATCACCTCGTCTTCTTCTTAATTACTCCCTCTGGTTCCCCCAGCGACAAGTATTGTGGTGC
AGAGGGAGTAGTTAAATATATCAGCTTCCACATTATTAGTACTGACCACTTTACTCGGCTCTTCATGTGCAGCTGGTGAG
CGAAAGCGAGAGGATGAGGATGAAGAAGCTTGAAGAGCTCAACAAGACAGTTGATTCACTCTATTAGACGTAATGATACC
AGCTTAATGTTAATTACCACCCCTGAGAGCTTAATTTCGATGTGCAATCTCCGTCCATCCCATGAATTTGTGGCATGTCC
TTGTTGCATGTATGTGATCTGTACGCGTCAGCTTGTAACTCACACCATGTCGTGAGCAATTCTTCTTTAATTTTCGCCTT
TCTTCTTGCTTGCTTCCTTGTGATTGACGACCGGGTTTGAGTCCATCTCTTGTTGCACTGTCGTTGTCGAGTAAAACTGA
CGTATTTAAACGAAAGGGACCAAGGAACAAGACCGACAAA-AAGAGGGTGAACATCGCTGGAATTGGTGTCGTGTGTGTT
GATTCATTCTTGACCAATGTTGATGGTTCATCCATTGTTGTCGTTGTTAGCT----GCAGCTAATTAATATCGCTAGAGA
GAGGCCAAGGGGAGGTGCCACATTGATTCTTCCGTTAGTGCT--TAAGTAGCCCACCTAGTACTGTCCC-AAAAAGGGTG
CTCTTGCAGTTTCCGATTCGAAAGGTGAGCAGGTCAGCACTGTCGATCACACCATGAGAATTGAGAACCGATCATCCTGC
TGGTGAGCAACCACCTCACTGACACCCATAACGAACTGGTGGGTGGCTAGCGGTAGTGGCTACTAACCGGGAGGTTAAAA
CGTCACGTTTAGCTGCAAAACTTCGTCGGATCGACCTAGGTAACATTTAATTAAGCTCCAGGAAAGGGAATGATGAGCGC
TTGCTTCTTGGTAGAA----------------------------------------------------------------
--------------------GACTGCA-----ATGCAGGTGGCTAGCTGGTCCCTGAGTTAGCT-------AGTGAGTGA
GATGGAGGGGTAGCCATGACTCATGATGCTGATACATATAGATATGCTGTCGAGGAGACAGGCCACATGAACCCCAGGTG
ATTAGTGCACGCAA-----AGGCCCAAGCCATGAAGCCATCTTTTGGCTGGCTCCATGCTCGCCGTCCCGGAGCATGCAT
GGACTGA----TGAGTATGGACCAGCTGGTATGGTATGTTATGGTATGGTGCCATTACATCACCGAATAGGCGAATAATG
TCACGTA-------------
>SNPs
----------S---------------------------------------------------------------------
--------------S----S-------S----------------------------------------------------
-----------------------------------------------------SSS-SSSSSSSSSSS------------
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----------------S----------------------SSSSS----------------------------------S-
-----------------------------------------------------S--------------------------
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------S----------------------------------------------SSS------------------------
--------------------------------------S-----------------------------------------
-----------S-----S---S--------------S-------------------------------------------
---------------------------------------SSSSSS-------------------S---SSSS--SS----
------------SS------------S------------------------------------------S----------
-------------------------------------------S---------------------S--------------
-------S---S---------------------------------------------S----------------------
-------S-------------------S---SS----SS-SS----S---------S--S--------------------
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------------------------------------------------------------SSSSSSSSSSSSSSS--S--
-SS---------------------S---S---------------------------------------------------
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---------------------------------------------SSSSSSSSSSS-SSSS--SSSSS------------
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--------------------------------------------------SS-------------SSSS-----------
----------------S---------------------------S-----S-----------------------------
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-----------------------------------------S--------------S-----------------------
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--------------------S-----------------------------------------------------------
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----------------------------------------------------SSSS------------------------
------------------------------------------SS-------------------------S----------
----------------S-------------------------------------------------S-------------
----------------S------------------------------------------------------S--------
-------------S--S---------------------------------------S-----------------------
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----------------------------------S---SS-------S--------------------------------
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-------SSSS----------------------SSSS--SSS--------------------------------------
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>forward_567
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-------------------------------------------------------------------ATGGCAGCTCACC
TAACACG-------------------------------------------------------------------------
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>reverse_2261
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--------------------GCCCGAGAGCTTAATTTCGC----------------------------------------
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