>input_sequence_68208
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-----------------------------------------------------------------ACCTAGAACTCCAGT
TCACCATGCAGCAACCACGCGGTGGCTGCTGGGCCGCTCGCCGCCTCCTGGCCGCGCCGGCGTCCCCGCCGGAT------
---CCCGCCCATCCGATGGACGCGCAGCCGATGGCGCGCCTGGAGACGGTGTTCAGCGGCACCACCATCGTGCTCTTCGT
CACCACCGTCTCCTACGTCATCTTCAGTGCAGTCTACGCCTGCATCCGCGCCGCCCGCTACGACGCCCGCCAACAAGGAC
TCGGATGGGTCGACGGCGACGGCCTGGGGGCGGCGGCGCCGCGGGAGGAGACCAAGCGCGCGCTCGAGGCGATACCCGTG
CGGGTGGTCGTCCTGCAGCAGCAGCGGCCGCA------CGATGCCATCGGAGGCAAGGAGGAGGAGGAGGAGAAGAAGGA
CCCCGA------CGCGGACGCTGGCGACTGCGCGGTGTGCCTGGCGGAGTACGCGGCCGGGGACGAGGTGCGGGTGCTCC
CGGCGTGCCGCCACGGGTTCCACCGGGAGTGTGTCGACCGCTGGCTGCTCACGCGCGCGCCCACCTGCCCTGTCTGCCGC
GCCACGGTCGGTGCGCACGTCGAGGGCGCCGACGCCAAGGAGGACTACGCGGCCGGACACGGCGGTGGCATTGGTTTCGC
CGCCGGGTCCCATGCGCTTCCGGAGCCGGTGTGACCGATCGACAGTGAGTGTGGATCGGCAGATGGCGGTCACGGTTCAC
TATAGCTATAGTTTAGCTGAACTTTGATGTCTGAAACAGGTTGTTGCTTTCAGTGATCACCCAGCTTATAATAACTAATA
AGAC-AGCGCCTTTGCT---------------------------------------------------------------
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>chr5A_1_TraesCS5A01G326800
GAGTGCTTACCTCGCTTGCTCCGCCATGGTCGACAACCCTCGCTCCCCTGCGTGTATCTCCAGCCGATGCCTTCTTCGAA
GCAACATTGCTGCTGGAGGCTGGCCGACGCGATGATGTTGCAAAGCGGGGCTCATCATGGCCGACCACCTTCGTCCCCCC
GCATGTATCTCTAGCCGATGCAGCGATGCCCATTGCGAAGCAATGCTGTTCCTAGAGTCCGGCTGGCGTGACAATGATGC
AAAGAGGGGCTCGTCGGCGCTAGGCCGGCTGTCGCGCGACTGCAGGGACACTGGTAGTAGATTGTGATGTTGATGTTGTG
ACCACAACATCGGTGGTGTTGCGACCGCAATGCCGATGATATGGTGTGCCATGATGTTACAGAGAGACCGATTAGA---G
GGGGGAGGGGTTCATGGCAGCAGGGCAATAGCTATAAATTGTCGTGGCGGTCGGCGGGTGCCACACTCCACGCAACTCTG
TCGGGGATGAAGACCAATACAATTTGGGGATTTGTTGCGCTTGCAACATGTGCCTTGTTGCAAAGCTAACACGACACAAC
CAAGCGAGGGCAACATGC-CTCATGTTGCAAATGAGCGGTTGGCTGTCATGTTGCGAACGCACGGTTGGCTGATCAGTTT
GCTGTTCGCGTGCAGATCCAATGGTTCTAGAGGCAGCCGATTCGATGTGAGCTTCAGCCGGCCGATACGTAGGGTCTATT
ATTACGTGTGGAAAGGAGTTAGCCCGGTTGAAAATTGCCACGCTCTAGCTGTGCGCGCGGCACCGCCTCAATTGCAGCC-
---GGCTGGCTGGATCGATCGACCCACCGTTGAGCGGCAGAAACGGACGGGCAGACACAGGCCCCGGCGCGTCGCGCCGC
GCGGAGAAGCGGGGCGGCTACGCTATGAAGCTTCCCTCCACCTTCCGTTTCTCTCGCCCGGATGCCCGCG----------
-TGCTAGCTACCACCCCCGCCTTAAAACCACAGGTCGAGCTCACACACCTTCAC------GCACAACCTAGAACTCCAGT
TCACCATGCAGCAACCACGCGGTGGCTGCTGGGCCGCTCGCCGCCTCCTGGCCGCGCCGGCGTCCCCGCCGGAT------
---CCCGCCCATCCGATGGACGCGCAGCCGATGGCGCGCCTGGAGACGGTGTTCAGCGGCACCACCATCGTGCTCTTCGT
CACCACCGTCTCCTACGTCATCTTCAGTGCAGTCTACGCCTGCATCCGCGCCGCCCGCTACGACGCCCGCCAACAAGGAC
TCGGATGGGTCGACGGCGACGGCCTGGGGGCGGCGGCGCCGCGGGAGGAGACCAAGCGCGCGCTCGAGGCGATACCCGTG
CGGGTGGTCGTCCTGCAGCAGCAGCGGCCGCA------CGATGCCATCGGAGGCAAGGAGGAGGAGGAGGAGAAGAAGGA
CCCCGA------CGCGGACGCTGGCGACTGCGCGGTGTGCCTGGCGGAGTACGCGGCCGGGGACGAGGTGCGGGTGCTCC
CGGCGTGCCGCCACGGGTTCCACCGGGAGTGTGTCGACCGCTGGCTGCTCACGCGCGCGCCCACCTGCCCTGTCTGCCGC
GCCACGGTCGGTGCGCACGTCGAGGGCGCCGACGCCAAGGAGGACTACGCGGCCGGACACGGCGGTGGCATTGGTTTCGC
CGCCGGGTCCCATGCGCTTCCGGAGCCGGTGTGACCGATCGACAGTGAGTGTGGATCGGCAGATGGCGGTCACGGTTCAC
TATAGCTATAGTTTAGCTGAACTTTGATGTCTGAAACAGGTTGTTGCTTTCAGTGATCACCCAGCTTATAATAACTAATA
AGAC-AGCGCCTTTGCTATTTGCAAGTTGCTTGAAATTCAGTGGTGCGTATGTAGATTTTCCAGTGAAGAAGATGAGGGC
AATGCCGTAATGGCACACCCGGACCTCCGTGGCCGAGACGGGGAGTCTTGTCCGGACCTCGCCTTGGACGGAGACGACAC
AACTGTCCATGGCGTTGCCCGGCGAGGACGAGGGTTCTACAGCAAAGGGGATTGACCCGTGAAAGATGCAAAACAATCGA
GCAATTTGATCATATATCATGTGTAACCGAACCGAAAATAAGGATTGCGGTTTCATATCATTATAGCGGTAGGGTTCCAC
TATCGTAAAGATAACGGACAATAGTCCGCCTTCTAATCAGGAAGGTTTACTTGAGGTAAACCTTTCTTTGTTATGTACCA
CCAGAAAAGGAGGGCACCGAATGAAGGGGTACATTTGTAATCTTTATCTTGGAGGAGGGCTGCCGCACTATCTTATTTCG
ATCTTATTTGATGAAAGTCCAAGCCATTTGCGTCATGCTCTTCCAACTGTCATCGTGCTTCACCGTGGCAAGCTCTCAAG
CAACTATGGTGTCGTTAGCAGTCCATGGCAATGTCGTCAGGTCGAAAATTGTAGGAGCATAAAAAGAATGAAGAAAATAT
TCCTGGCAAAATATTTGAGAGTAAGCAAGCAAACTATCCATGCAAGTTTCCTTGAGTAAGGAAGCAAACTATCCGTGCAA
GTTTCCTTCTTAGCCAAGCAACTTCCCATAAAAAAGCAGGGTTAACATGTAAGTTTTTCCTTATCGACATACCTTAAAAC
TATTGTGGTTGTTGATAAATTTGATA-TTTTTTTGCGTAAAGTTCTACCTGCGTGAGTGTATTGCCAGAAAAGACCACCT
CCGAATAGAACTGCCAAAAAACTACCGTGGCGGTCCTATTGCCAGAGACCGCAGGTTCCATATCACAGGATTTTCCGAGT
GGCAGATCGATGGAACCACACGGTGTGCACCATGTGAACTGTTGTGTTGGAACGAGTG
>chr5D_1
GAGTGCTCACCTCGCTTGCTCCGCCATGGTCGACCACCCTCGCTCCCCTGCGTGTATCTCCAGCCGATGCCTACGTCGAA
GCAACGTTGCTGCTGGAGGCTGGCCGACGCGATGATGTTGCAAAGC-GGGCTCATCATGGCCGACCACCTTTGCTCCCCT
GCATGTATCTCTAGCCGATGCAGCGATGCCCATTGCGAAGCAATGCTGTTGCTACAGTCCGGCTGACGTGACAATAATGC
AAAGAGGGGCTTGTCGGCGCTAGACCGGCTATCACGCGACTGCAGGGACACTGGTAGTAGATTGTGATGTTGATAT--TG
ACCATAACATCGGTGATGTTGCGACCGCAACGCCGATGATATGGTGTTCCATGATGTTGCACAGGCTGAGTAGATGGGGG
GAGGGGGGTGTTCATGGCAGCGGGGCAATAGCTATTGCTGC----GGCGGTCGGCGTGCGCCACACTCCGCGCAACTCTG
TCGGT-ATGGAGACCAATACAATTTGGGGATTTGTTGCGCTTGCAACATGTGCCTTGTTGCGAAGCTAACACGACACAAC
CAGACGAGCACAACATTGACTCATGTTGCAAATGAGCGGTTGGCTGTCATGTTGCGAACGCACGGTCGGCTGATCAGTTT
GCTGTTCGCGCGCAGATCCAATGGTTCTCGAGGCGGCCGATTAGATGTGAGCTTCAGCCGGCCGATACGTAGAGTCTATT
ACCTGTGGTGGAAAGGAGTTAGCCCGGTTGAAAATTGCCACGCTCTAGCTGTGCGCGCGGCACCGCCTCAAAGTCAGCCG
GCTGGCTGGCTGGATCGATCGACCCACCGTTGAGCGGCAGAAACGGACGGGCAGACACAGGCCCCGGCGCCTCGCGCCGC
GCGGAGAAGCGGGGCGGCTACGCTATGAAGCTTCCCTCCACCTTCCGTTTCTCTCGCCCGGATGCCCGCGCGAAGATATC
TTGCTAGCTACCACCCCCGCCTTAAAACCACAGGTCGAGCTCACACGCCTTCTTCACGCAGCACAACCTAGAACTCTAGT
TCACCATGCAGCAACCACGCGGTGGCTGCTGGGCCGCTCGCCGCCTCCTGGCCGCGCCGGCGCCCCCGCCGGAT------
---CCCGCCCATCCGATGGACGCGCAGCCGATGGCGCGCCTGGAGACGGTGTTCAGCGGCACCACCATCGTGCTCTTCGT
CGCCACCGTCTCCTACGTCGTCTTCAGCGCGGTCTACGCCTGCATCCGCGCCACCCGCTACGACGCCCGCCAACAAGGAC
ACGGCTGGGTCGATGGCGACGGCCTGGGAGCGGCGGCGCCGCGGGAGGAGACCAAGCGCGCGCTCGAGACGATCCCCGTG
CGGGTGGTCGTCCTGCAGCAGCAGCAGCAGCAGCCCGGCGATGTCATCGGAGGCCGGAAGAAGGAGGAGGACG-------
--CCGA------CGCGGACGCCGGCGACTGCGCGGTGTGCCTGGCGGAGTACGCGGCCGGGGACGAGGTGCGGGTGCTCC
CGGCGTGCCGCCACGGGTTCCACCGGGAGTGCGTCGACCGCTGGCTGCTCACGCGCGCGCCCACCTGCCCTGTCTGCCGC
GCCACGGTCGGTGCTCACGTCGAGGGCGCCGACGCCAAGGAGGACTACGCGGCCGGACACGGCGGTGTCATTGGTCTCGC
CGCCGGGTCCCATGCGCTTCCGGAGCCGGTGTGACCTATCAACCTTGAGTGTGGATCGGCAGATGGCGGTCACGGTTCAC
CATAGCTTTAGTTTAGCTGAACTTTGATGTCTCAAACAGGTTGTTGTTTTCAGTAATCACCCAGCTTATAATAACTAATA
AGGATAGCGCGTTTGCTATTTGCAAGTTGCTTGAAATTCAGTGGTGTGTAAGTAGATTTTCCAGAGAAGAAGATGAGGGC
AATG--------GCACACCCCGAGCTCCGTGGCCGAGACGGGGAGTCTTGTCGGGACCTCGCCTTGGACGGAGACGACAC
AACTGTCCATGGCGTTGCCCGGCGAGGACGATGATTCTACAGCAAAGCGGATTGACCCATGAAAGATGCAAAACAATCGA
GCAATTTGATCATATATCATGTGTAACCGAACCGAAAATAAGGATTGCGGTTTCATACCATTATAGCGGTAGGGTTCCAC
TATCATAGAGATAACGGACAATAGTCCGCCTTCTAATAAGGAAGGTTCACTCGAGGTAAAGCTTTCTTTGCTATGTACCA
CCAGAAAAGGAGGGCACTGAATGAAGGGGTACATTTGTAATCTTTATCTTCGAGGAGGGCGGCCGCACTATCTTATTTCG
ATCTTATTCGATGGAAGTCCAAGCCATTTGCGTCATGCTCTTCCAACTGTCATCGTGCTTCACCGTGGCAAGCTCTCAAG
CAACTATGGTGTCATCAGCAGTCCATGGCAATGTCATCGGGTCGAAAATTGTAAGAGCATAAAAAGAATGAACTAAACAC
CCCTGGCAAAATATTCGACAATAAGCAAGCAAACTATCCATGCAAGTTTCCATGTGTAAGCAAGCAAACTATCCATGCAA
GTTTCCTTCTCAGCCAAGCAACTTCCCAT-AAAAAGCAGGGTTAACATGTAAGTTTTCCTTCTCGATAC-ACCTTAAAAG
TATTGTAGTTGTTGATAAATTTGATTTTTTTTTTGCGTAAAGGACTACCTGCGCGAGTGTATTGCCAGAAAAGACCACCT
CCAAATAGAACTGCCAAAAAACTACCGTGACGGTCCTATTGCCGGAGACTGCAGGTTCCATATCACAGGATTTTCCGAGT
GGCAGATCGATGGAACCGAACGGTGTGCACCATGTGCACTGTTGTGTTGGAACGAGTG
>chr5D_1015
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-------------------------------------------------------------------------------T
TCGCCATGCAAAGACCTTGCGGCGGGTGCTGGGCCACTCGCCGCCTCCTGACCGCGCC------CCCGCCGACGGCGGTG
TCGCCTGACCAGTCCATGGACGCGCAGCA---GGCGCACCTGGCGAGGGTGCTCAGCATCACCACCACCGTGCTCTTCGT
CGCCAGCGTCTCCTACATCGCCCTCAGCACGCTCTACGCCTGCCTCCGCGCCGCCCGCCAGGA------------AGAGC
CCGGCGGGGCCGACGCCGACGGCC------CGGCGCCGCCGCGGGAGGCGACCAAGCGCGCGCTCGAGGCGATCCCCGTG
CGGGTGGTCGTCCTGCTGGACCAT---CCGCG------CGACGGCGGCTGCCCCGAGGCGGTCGTGGCGGACG-------
--AGGGTGTGGGCGCGGACGCCGACGCCTGCGCCGTGTGCCTGGCGGAGTACGCGGCCGGGGACGAGGTGCGCGTGCTCC
CGGCGTGCCGCCACGGCTTCCACCGGGAGTGCGTCGACCGCTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTCTGCCGC
GCCCCGGTCGCCGCGCACCTCGACGGCGCCGACGCCAAGGAGGA------------------------------------
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>chr5A_1034
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------------------GCGGCGGGTGCTGGGCCGCTCGCCGCCTGCTGACCGCGCCGGCGGCGGCCCCCTCGG-----
----CGGACCAGTCGATGGAGGCGCAGCA---GGCGCACCTGGAGAGGGCGCTGAGCATCACCACCACCGTGCTCTTCGT
CGCCAGCGTCTCCTATATCGCCCTCAGCACGCTCTACGCCTGCCTCCGCGCCGCCCGCCACGA------------AGACC
CCGCCGGGGCCGACGCCGACGGCC------CGGCGCCGCCGCGGGAGGCGACCAAGCGCGCGCTCGAGGGGATCCCCGTG
CGGGTGGTCGTCCTGCTGGACCAT---CCGCG------CGACGGCGGTTGCCCCGAGGCGGTCGTGGAGGACG-------
--AGGG------GGTGGACGCCGACGCCTGCGCGGTGTGCCTGGCGGAGTACGCGGCCGGGGACGAGGTGCGCGTGCTCC
CGGCGTGCCGCCACGGCTTCCACCGGGAGTGTGTCGACCGCTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTCTGCCGC
GCCCCGGTCGCCGCGCACCTCGACGGCGCCGACGCCAAGGAGGA------------------------------------
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>SNPs
-------S--------------------------S-------------------------------------S-S-----
-----S----------------------------------------S------------------------S-SS----S
--------------------------------------------------S---S----------S---------S----
-----------S-----------S------S--S----------------------------------------S-SS--
----S----------S--------------S----------------S----------S--S--SSSSS-SSS-SS----
-S---S--S------------S-------------SSS-SSSSSS-----------S-S----------S----------
----SS---S---------------------------------------------------S------------------
--SS----SS------SS------------------------------------------------S-------------
----------S-----------------S-----S-------S-----------------------------S-------
-SSSSSS----------------------------------------------------------------SSS------
----------------------------------------------------------------------S---------
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----------------------------------------------S-----SS----------------------S---
--------------------------------------------------------------S-----------------
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-S-----------------S-------S--S-------------------------------------------------
S---S-----------------------S--------------------------------------------S------
-------------------------S-----------------S----------S----------------SSSSSSSSS
SS-------------------S----------------------------------------------------------
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-------------------------------------------------------------------S-------S----
------------------------------------S---S--SS-----------------------------------
S------S------------------------S-------------S-------S-------------------------
--SS------S-----------------------------------S---S-------------S---------------
----SSSSSSSS--------S--S----------------------------S---------------------------
-------------------------------S-S-------------S----------S---------------------
---------------------------------------------------------S----------------------
----S--S-----------------------------S---------S---S--------S---------S---------
-----------------S--------------------------------S---------S-------------------
--------S----S------------------------------------------------------------------
-------------S-S-------------------S--S--------------S------------------SS---S-S
S--------------S--S-S------------------------------S--S-----S-------------S-----
----------S------------------S---------------------------S-S-SSSSSSSSS---------S
------S------------------S----------------SS---------S--------------------------
--S--------------------------S-------------S-----S------------------------------
-----------------SS-----------------S---------------------
>forward_1013
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---------------------------------GTCGAGCTCACACACCTTCA---------------------------
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>reverse_2750
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-----------------------------GCGGTCCTATTGCCAGAGAC-------------------------------
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