>input_sequence_68207
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-------------ATGGGGGAGCTGCGCCCATTCCGCGTCAACAGCGACAACAGAACCCTCAGCACAAACGAGCACGCCT
GGACCAACGGTTAGGGAGCCACAACATTACAACAACTGGTAACGGTTTTCTACCCGTGACCCACACGTGACATGTGAATG
TGTTGATGCTTGTGCA----GTGGCTAACGTGCTCTTCCTCGAATCGCCTGCCGGCGTCGGATTTTCCTACTCCAACACG
ACCTCCGACTACAACAAGAGCGGAGACCAGAGGACATCGGAGGACGCGTTCCTCTTCCTCGTCAGCTGGTTCGAGAGGTT
CCCGGGGTACAAGGGCCGCTCCTTCTACATCTCCGGGGAGAGCTACGCCGGCCACTACGTGCCGCAGCTCGCAGCCACCA
TCTTGAGCCACAACACTTCCATAAACCTACAGGGTATTTTGGTACGCGTGATTATGTTTAGTTAAACATACACTTCATAA
CAGTTAACACATATATTTCCTAGTGAAGATCGTATAATATAGCTTGCGGATCTCTAATTGGTTAGGTGGGCAACCCATAT
CTTGATGATAACATGAACACAAAAGGGGTGACCGACTTCCTGTGGGGCCATGCGGTGATATCAGATGAGGTGTACGCCAA
CATCACCAAGAGCTGCAACTTCAATCTGTCGGATGGAAGCGCATGCTCTGACGCCATGGCCGCATATGATACTGCCAACA
CTCTCCTCTTCGACATTTACGGACCTGTTTGTATCGACGCACCCGACGGAAAATACTACCCCAGCCGCTATGTAAGATAT
ACGTATTTTGGAGTACATCTTTTCTGA-----------------------------------------------------
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>chr5A_1_TraesCS5A01G244600
TCTTTGAAAAATAAATAATTTATGTTAATATTTTTATTAATGGACCACCCTGGTGTATTGGGCTGGCTACGCCACTGCTG
GCAACGTATAAGGACAACCGAGTGTACCCATGAGGAAATTCAAACAATCATACATCACCGGGGCAGCATGCCAAATGGTG
ATCTCTCCTAACTGTAAGCTTTTCTAAGTTTGCGGACAAACTATAACTGGACGACGTACAGCCGGCATAGGCAGTATTAA
TAGAACAAAAGA-----------CACAGACATGTTATTTTTCTTTCATTTTCCTCTCTGTCTCGTTATATGGTCTTCTGT
CTCGTTATATGGTCTGAAGAACTTTTCAAGGCTCCAACAC--------TGATCGCGTCAAAGCATTCTCCTTCCATTGTC
CTT------------ACCTATATAAGCACCT-GGAACGCCACTCAGATGTTCGTGGAAGCGACGA---CGGCAGCTAATT
TTCTTCAGAAAGCATCATGAGGAACACTTCCTTGTGTCCCCTCATTCTCCTCATCTGCGTGGCGGCGTGGTGCGCAGATG
GGTCGCAGGAGGCTCGATCGGCTCAGAGAGTTGATCCTGTCCAAGAGGACTAGCACCCATAGCAGTAGCAACAGCGTAGA
TGAACCAAGGATAGGAGCTACTGCCACCAGTGGCCTCCGAGCAGAGCACTCCGTCTCTGACCAGAGCGATCAGAAGGACG
CCGACAGGATCGCCGCCCTGCCGGGGCAGCCGCCCAACGGCGTCGGCTTCAGCCAGTACGCAGGCTACGTGACCGTCGAT
GAGATGAACGGCCGGGCGCTCTTCTACTACCTTGTCGAGGCGGCCACCAACGCGGCGACCAGGCCACTCGTCCTGTGGCT
TAACGGAGGTTCGGCCATGCATACATAGAGATGCACTTGTCTGAATGTCTCGTCTCTCATACGTTATGT-----------
------AAAATGATCTTACATTTTGG-GACGGAGTACTTGATATATTTCCATGCGGTGCAGGTCCAGGATGCTCATCCTT
CGGCTACGGAGCAATGGGGGAGCTGCGCCCATTCCGCGTCAACAGCGACAACAGAACCCTCAGCACAAACGAGCACGCCT
GGACCAACGGTTAGGGAGCCACAACATTACAACAACTGGTAACGGTTTTCTACCCGTGACCCACACGTGACATGTGAATG
TGTTGATGCTTGTGCA----GTGGCTAACGTGCTCTTCCTCGAATCGCCTGCCGGCGTCGGATTTTCCTACTCCAACACG
ACCTCCGACTACAACAAGAGCGGAGACCAGAGGACATCGGAGGACGCGTTCCTCTTCCTCGTCAGCTGGTTCGAGAGGTT
CCCGGGGTACAAGGGCCGCTCCTTCTACATCTCCGGGGAGAGCTACGCCGGCCACTACGTGCCGCAGCTCGCAGCCACCA
TCTTGAGCCACAACACTTCCATAAACCTACAGGGTATTTTGGTACGCGTGATTATGTTTAGTTAAACATACACTTCATAA
CAGTTAACACATATATTTCCTAGTGAAGATCGTATAATATAGCTTGCGGATCTCTAATTGGTTAGGTGGGCAACCCATAT
CTTGATGATAACATGAACACAAAAGGGGTGACCGACTTCCTGTGGGGCCATGCGGTGATATCAGATGAGGTGTACGCCAA
CATCACCAAGAGCTGCAACTTCAATCTGTCGGATGGAAGCGCATGCTCTGACGCCATGGCCGCATATGATACTGCCAACA
CTCTCCTCTTCGACATTTACGGACCTGTTTGTATCGACGCACCCGACGGAAAATACTACCCCAGCCGCTATGTAAGATAT
ACGTATTTTGGAGTACATCTTTTCTGATAGTGGCAAATTATAT----GCACGTAACACACTTTCTTTGAATACCTAATTT
CTGAAGAAAAAATATCCGCTCTAAATTGTGCAGGTGCCGGGGTATGATCCATGCACCGGCTACTACATAGATGCTTACCT
CAACGATCCTGAGGTGCAAAAGGCTCTGCATGTTAGAACGACCAAGTGGGCGGGCTGCACGTAAGAGTTAGCTTAGTTGG
GGCCAAGATAAATACTCTTGTGAGCATCCACTCAGTCCACTTACCGCTGCTGTGCTTGTGCAGGGACTTGCACTGGAAAG
ATTCATCGGCGTCCATTGTGCCAACGCTCAAATGGCTCATGGGCCACGGGCTGCATGTGTGGTTGTTCAGGTAGGTAACA
TGCCAACCCCAGGCTGAACTGCAACTGCAAGCACGCATCTAACATTGCCAAAGTGTGTGGGTAACAAATAGTAATATGTT
TTCAGCCGCGATTTCGACTCCGTGTGCCCGTTTACCGCCACGAGGTACTCCATCCATCCATGACCTTGGTGTCGCCGTCA
CGGAGCCGTGGCGCCCATGGACCGCGAACAAAGAGGTAAAGCATGACTACATGTTCTAGTCAGTTTGCACTTGTTTGTTT
GTACTGACTGACACTGATAAATC--TTTGCAGGTTGGAGGGTACGTTGAAGCATACACGGGCGGTTTGGTTTTTGCATCT
GTGAGGGGCGCTGGTCATCAGGTCCCTTACTTCCAGCTTGAGAAAGCTCTGATATTGTTCAGCTCGTTCCTGAAAGGAAC
GCTTCCACTCTATGAAAAGGGGCAGTAGTATTATGGACCTAAGTAAGAATTGTGGTGTGTCATCCATCCAGATATGGTAT
TGCCTTAGCAAGGAGCTTCTTTTTTGTCTGTCTTTTACCTCTTCAAATGGACACGGGCTCTTGAATATACAACAAATTTA
TGGCACCTCTATTTTGTTACAACTGCCTTCCGGAGTGCCACGCACCTAACGTGTGGCACTTATCAACAATTAG
>chr5B_78
-----------------------------------------------------------------------------CTG
GCAACGTATAATGACACCGGAGTGCACCCATAGGGAAACTC------TCATACATCACCAGGGCAGCATGCCAAGTGGTG
CTCTCTCCTAACTGTAAGCTTTTCTAAGCTTGGGTACAAACTATAACTGGACAACATACAGCCGGCATCTGCAGTATTCA
ATTGAGCAACAATGGCCACAGCCCACAGGCATGCTGTTTTTCTTTCCTTTTCCTTTTTGTCTCAG---------------
-------TACGGTCATAAGAACTTTTCAAGGCTCCAGCACTGATTGATTGATCGCGTCAAAACATTCTCCTTCCAATCAT
T-TCCCTTACATTACACCTATATAAGCACCTCGAAACACCACACAAATATCCGTGGACGCGACGG---CAGCTGCTAATT
TTCTTCAGAAAACACCATGAGCAACACTTCCTTGTG---CCTCCTTCTCCTCATCTGCGTGGCCGCGTGGCACGCAGATG
CGTCGCAGGAGGCTCGA----CTCAGAGAGTTGATCCTGTCCAAAAGGGCTAGCACCAGTAGCAGTAGCAACAGCGTAGA
TGAGCCAATGATAGGAACTACAGCCGCCAGTAGCCTCCGAGCAGAGCACTCTGTCTCTGACCAGAGCGATCAGAAGGATG
CCGACAGGATCGCCGCGCTGCCGGGGCAGCCGCCCAACGGCGTCGGCTTCAGCCAGTACTCAGGCCACGTGACCGTCGAC
GAGAAGAACGGCCGCGCGCTCTTCTACTACCTTGTCGAGGCGGCCACCAACGCGGCGACGAGGCCGCTCGTCCTGTGGCT
TAACGGAGGTTCGGCCATGCATACATAGAGATGCACTTGTGTCTCCTTAGGGAATACACATAGCTTCGCTCCTGCGTATA
GTGTCAAAAATGATCTTACATTTTTGAGACGCAGTACGTGATATATTTCCATGACGTGCAGGTCCAGGATGCTCATCCTT
CGGCTACGGAGCAATGGGGGAGCTGGGCCCGTTCCGCATCAACAGCGACAACAGAACCCTCAGCACAAACGAGCACGCCT
GGAACAACGGTTAGGGAGTCACAACATTACAACAACCGCTAACGGTTTTCTACGGACGACCCACACGTGACACGTGAAGG
TTTTGATGCTTGTGCATGCAGTGGCCAACGTGCTCTTCCTTGAATCGCCTGCCGGCGTCGGGTTTTCCTACTCCAACACG
ACCTCCGACTACGACAAGAGCGGAGACCAGAGGACATCAGAGGACGCGTTCCTCTTCCTCGTCAGCTGGTTCGAGAGGTT
CCCGGAGTACAAAGGCCGCTCCTTCTACATCTCCGGGGAGAGCTACGCCGGCCACTACGTGCCGCAGCTCGCAGCCACCA
TCTTGAGTCACAACACTTCCATAAACCTACAGGGTATTTTGGTACGCGCGATTATGTTTAGTTAAACATACATTTCATAA
CAGTTAACACATTTATTTCCTAGTGAAGATCGTATGATATAGCTTGTGGATCTCTACTTGGTTAGGTGGGCAACCCATAT
CTTGATGATAACATGAACACGAAAGGGGTGATGGACTTCTTGTGGAGCCACGCCGTGATATCAGACGAGGTGTACGCCAA
CATCACCAAGAGCTGCAATTTCAATCTGTCGGATGGAAGCGCATGCTCTGACGCCATGGCCGCATATGACACTGCTAACA
CTCTCCTCTTCGACATTTACGGACCTGTTTGTATCGACGCGCCCAACGGAAAATACTACCCCAGCCGCAATGTAAGATA-
---TATTTTGGAGTACATCTTTTCTGATAGTGGCAAATTATATATATGCACGTAGCACACTTCCTTCGAATAACTAATTT
CTGAA-AAAAATTATCCGCTCTAAATTGTGCAGGTGCCGGGGTATGATCCATGCACCGGCTATTACATAGATGCTTACCT
CAACGATCCTGAGGTGCAAAAGGCTCTACATGTTAGAACGACCAAGTGGGCAGGCTGCACGTAAGAGTTAGCTTAATTGG
GGCCAAGATAAATACTCTTGTGAGCATCCACTCACTCCACTTACCACTACTGTGATTGTGCAGGGACTTGCACTGGAAAG
ATTCATCGGCGTCCATTGTGCCAACACTCAAATGGCTCATGGGCCAGGGGCTGCATGTGTGGTTGTTCAGGTAGGTAACA
TGCCAACCCCAGGCTGAACTGCAACTGCAAGCACGCACCTAACATTGCCAAAGTGTGTGGGTAACAAATAGTAATATGTT
TTCAGCGGCGATTTCGACTCCGTGTGCCCGTTTACCGCCACGAGGTAC----TCCATCCATGACCTTGGCGTCGCCATCA
CGGAGCCGTGGCGCCCATGGACCGCGAACAAAGAGGTAAAGCATGACTACATGTTCTAGTCAGTTTTCACTTGTTTGTTT
GTACTGACTGACACTGATAAATC--TTTGCAGGTTGGAGGGTACGTTGAAGCATACACGGGCGGTTTGGTTTTTGCATCT
GTGAGGGGCGCTGGTCATCAGGTCCCTTACTTCCAGCCTGAGAAAGCTCTGATATTGTTCAGCTCGTTCCTGAAAGGAAC
GCTTCCACTCTATGAGAAGGGACACTAGTATTATGGACCTAAGTAAGAATTGTGGTGTCATG--CATCCAGATATGGTGT
TGCCTTAGCAAGGAACTTCTTTTT--TCTGTCTTTTGCCTCTTCAAACGGACACGGGCTCTTGAATATACAACAAATTTA
TGGCACCTCTAGTTTGTTACAACTGCCTTCCGGAGTGCCACACACCTAACTTGTGGCACTTATCA--------
>chr5D_78
-----------------------------------------------------------------------------CTG
GCAACGTATAATGACACCGGAGTGTACCCATAGGGAAACTCATACAATCATACAGCACAGGGGCAGCATGCCAAATGGTG
CTCTCTCCTAACTGTGAGCTGTTCTAAGCTTGCGTACAAAGTATAACTCGACAACATACAGCCTGCATCTGCAGTATTCA
ATTGAGCAATGGCA----------ACAGACATGTAGTTTTTCTTTCCTTTTTCTTTTTGTCTCAG---------------
-------TACGGTCAGAAGAACTTTTCAAGGCTTCAACACTGACTGATTGATCGCGTCAAAACTTTCTCCTTCCAATCAT
TGTCACTTATATTACACCTATATAAGCACCTCGAAACACCACTGAAATATCCGTGGACGCGAGGAGTACAGCTGCTAATT
TTCTTCAGAAAACATCATGAGGAACACTTCCTTGTG---TCTCCTTCTCCTCATCTGCGTGGCCGCGTGGCACGCAGATG
CGTCGCAGGAGGCTCG----GCTCAGAGAGTTGATCCTGTCCAAGAGGACTAGCACCCATAGCAGTAGCCACAGCGTAGA
TGAGCCAATGATAGGAGCTACTGCCACCAGTAGCCTCCGAGCCGAGCACTCCGTCTCTGACCAGAGCGATCAGAAGGATG
CCGACAGGATCGCCGCGCTGCCGGGGCAGCCGCCCAAGGGCGTCGGCTTCAGCCAGTACTCAGGCTACGTGACCGTCGAC
GAGAAGAACGGCCGCGCGCTCTTCTACTACCTTGTCGAGGCGGCCACCAACGCGGCGACGAGGCCTCTCGTCCTGTGGCT
TAACGGAGGTTCGCCCATGCATACATAGAGATGCACTTGTGTCTCCTTAGGGAATACACATAGCTTCGCTCCTGCGTATA
GTGTCAAAAATGATCTTACATTTGGTAC-----------------------------GCAGGTCCAGGATGCTCATCCTT
CGGCTACGGAGCAATGGGGGAGCTGGGCCCGTTCCGCGTCAACAGCGACAACAGAACCCTCAGCACAAACGAGCATGCCT
GGAACAACGGTTAGGGAGGCACAACATTACAACAACCGCTAACGGTTTTCTACCGATGCCCCACACGTGACATGTGAAGG
TTTTGATGCTTG----TGCAGTGGCCAACGTGCTCTTCCTCGAATCGCCTGCCGGTGTCGGGTTTTCCTACTCCAACACG
ACCTCCGACTACGACAAGAGCGGAGACCAGAGGACATCGGAGGACGCGTTCCTCTTCCTCGTCAGCTGGTTCGAGAGGTT
CCCGGAGTACAAGGGCCGCTCCTTCTACATCTCCGGAGAGAGCTACGCCGGCCACTACGTGCCGCAGCTCGCCGCCACCA
TCTTGAGCCACAACACTTCCATAAACCTACAGGGTATTTTGGTACGCGCGATTATGTTCAGTTAAGCATACACTTCATAA
CAGTTAACACATC----TCCTAGTGAAGATTGTATAAATTAGCTTGTGGATCTCTACTTGGTTAGGTTGGCAACCCATAC
CTTGATGATAACATGAACACGAAAGGGGTTATCGACTTCTTGTGGAGCCACGCCGTGATATCAGACGAGGTGTACGCCAA
CATCACCAAGAACTGCAATTTCAATCTGTCGGATGGTAACGCATGCTCTGACGCCATGGCCGCGTATGATACTGCCAACA
CTCTCCTCTTCGACATTTACGGACCTGTTTGTATCGACGCACCCGACGGAAAATACTACCCCAGCCGCTATGTAAGATA-
---TATCTTGGAGTACATCTTTTCTGATAGTGGCAAATTATAT----GCACGTAACACACTTCCTTTGTATACCTAATTT
CTGAAGAAAAATCATCCTCTCTAAATTGTGCAGGTGCCGGGGTATGATCCATGCACCGGCTACTACATAGATGCTTACCT
CAACGATCCTGAGGTGCAAAAGGCTCTACATGTTAGAACGACCAAGTGGGCAGGCTGCACGTAAGAGTTAGCTTAATTGG
GGCCAAGATAAATACTCTTGTGAGCATCCACTCACTCCACTTACCACTACTGTGATTGTGCAGGGACTTGCACTGGAAAG
ATTCATCGGCGTCCATTGTGCCAACGCTCAAATGGCTCATGGGCCACGGGCTGCGTGTGTGGTTGTTCAGGTAGGTAACA
TGCCAACCCCAGGCTGAACTGCAACTGCAAGCACGCATCTAACATTGCCAAAGTGTGTGGGTAACAAATAGTAATATGTT
TTCAGCGGCGATTTCGACTCCGTGTGCCCATTTACCGCCACAAGGTAC----TCCATCCATGACCTTGGCGTCGCCATCA
CGGAGCCGTGGCGCCCATGGACCGCGAACAAAGAGGTAAAGCATGACTACATGTTCTAGTCAGTTTTCACTTGTTTGTTT
GTACTGACTGATGACACTGAAATTTTTTGCAGGTTGGAGGGTATGTTCAAGCATACACGGGCGGTTTGGTTTTTGCATCT
GTGAGGGGCGCTGGTCATCAGGTCCCTTACTTCCAGCCTGAGAAAGCTCTGATATTGTTCAGCTCGTTCCTGAAAGGAAC
ACTTCCACTCTATGAAAAGGGGCAGTAGTA-TATGGACCCAAGTAAGAACTGTCGTGTCATG--CATCCAGATATGGTGT
TGCCTTACTTAGGAGCTTCTTTTTT-TCTGTCTTTTGCCTCTTCAAATGGAGATGGGCTCTTGAATGTA-----------
-------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
-----------S----S-S------------SS-----S---S-------------------------------------
S---------------------------S-----S-----------------S--S------------SS--------S-
SSSS-SS--S-------------------------S----------S-------S-S------SSSSSSSSSSSSSSSSS
SSSSSSS--S----S----------------------------------------------S-------------S-SSS
SS-------------------------------S---S-------S--S-S------S-----------S--S-------
-----------S------------------------SSS----S-------------------S------SS--------
S----------------SSS------------------------------------------------------------
---S----S----------------------S----------------------------------------------S-
----------------S------------------------------------------S-------------------S
----S---------S--------------------------------------------S-----S--------------
----------------------------------------S-SSSSS-SSS-SS-SSSSSSS-S-SS-S-----------
-------------------------------S-----S---------------SS-------------------------
-------------------------S----S-------------------------------------------------
---S--------------S-----------------S-S---------------SS----------------------S-
-S-----------------------S-----------------------------------S------------------
------------S-------------------------------------------------------------------
-----S--------------------------------------------------------------------------
------------------------------------------------S-------------------------------
------------S---------------------------------S---------S-----------------------
--------------------S----------S-------S-----S----S--S-----------S--------------
------------------S-------------------------------------------------------------
-------------------------------------------------------------------------------S
SSS-----------------------------------------------------------S-----------------
-----------S--------------------------------------------------------------------
---------------------------S-----------------------S-----------------------S----
----------------------------------S----------S--S-----S-------------------------
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------S-----------------------------------------SSSS-----------------S------S---
------------------------------------------------------------------S-------------
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-------------------------------------S------------------------------------------
----------------------------------------------------------SSSSSS--------------S-
-------------------------S----------S-------------------------------------------
-----------S-----------------------------S--------S--------------SSSSSSSS
>forward_70
--------------------------------------------------TGGTGTATTGGGCTGGCTAC----------
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>reverse_1646
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---------------------------------------------GGCCATGCGGTGATATCAGA---------------
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>forward_451
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-------------------------------TGGAACGCCACTCAGATGTT-----------------------------
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>reverse_1666
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-----------------------------------------------------------------TGAGGTGTACGCCAA
CATCA---------------------------------------------------------------------------
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>forward_1293
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-------------------------------------------------------------------------CAACACG
ACCTCCGACTACA-------------------------------------------------------------------
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>reverse_2115
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----------------------------------GTCCACTTACCGCTGCTGT---------------------------
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