>input_sequence_68188
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-------------------------ATGGCTGACCCAAGCAGCACGTGCGCGC---------CTCCTTCTTCTTCTTCCA
CGTCGCCGCGGCTCAGCGCCGGCGTCGTCAACTTCTTGGCGCGCCGTGCCATGAACACGCACCACCGAGCAGCAGC----
--AGCAGCAGCATTTCCC---------CTCCACTCGCCGGGCTCCTCCACCGGCTCCCCCGACTCCGTGC----------
-----CGTGGAGCAGCTGCCACCACCACCACGCCCCGCCCACGCCGCCCCT---GCCGCCGTTCGACA---------C--
-------CGACGAGAAGCTCCTGCTCAACACGCTCTCCCAGCACG---------------A---GGCAG------CGGCG
GCGCCGCTGAAGCAAGAGGCAACGGAC------------------GCCG---AGGTGGCGCCCGGCGTGG---GCGGCGG
GCGCGCGTTCCGCGGCGTGCGGAAGCGGCCTTGGGGCAAGTACGCGGCGGAGATCCGGGACTCGACGCGGAATGGCGTCA
GGGTTTGGCTGGGCACGTTCGAGAGCCCGGAGGCGGCGGCGCTGGCCTACGACCAGGCGGCCTTCGCCATGCGCGGCTGC
GCCGCCGTCCTCAACTTCCCCGCCGACCAGGTCCGCCGCTCGCTCGAGGGCGCGGGGGAAGACGTGCGCGGCCGCGCCCA
CGGGGTGTCGCCCGTGCTGGCGCTCAAGCGGCGGCACTCCATGCGGAGCCGAAAGGCCACGGCGTCGTCGCCGTGCCG--
---------CAAGGCCGCCCGTGG------CCGGCCGGAGGGCGTGGTGATGGAGCTGGAGGACCTTGGCGCGGAGTACC
TCGAGGAACTGCTCGGCGCCGCCGACGACATGACGGCCTCGGCCTACGACTCATGGTGCTCGGGCCATCATTCCATCTGA
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----
>chr1B_1_TraesCS1B01G342500
TGGAACCAAGAAAGGAGGAGGAAGGAACAGGCGAAAGAAGGAGAGACGGAAGATTCGTATGGAACCGGTGAAGGAGCAGC
GCTGCTGGCGTCTGGCGAGGTGCAATGCATCCATGCATGCATGCACGTCCCGCCTAATTACGGGGTTATCCTTGCTTGGA
AATTTCCAAGAAATTAAAAAAGGACGTTA-----------AAATATTGACTCACGTGCGGCTTCATCACGTACCA---TT
TGCAGTAACATAATTAACCGTCTCGCTCGGCTCACACCA--------------CCCAGCTAAATTGCAGCCAGTGGAGTG
GAGTGTATTATGCTTGGAAACTTCAGATAGATGCCAGGCGACGAA--------TGGTGGTAATAATATGCCGGATGGTAG
CCACTGCCTAATTCAGAGCGAATATGAGAAGGTCAGGT-----CAGGTGCAATGGACCTCAACATTGACTCACGTGCGGC
TAATCTC-----GCTCACCA--------TTTGAGTGCAGTGGAGTGTATACCACTACCACCCTCTAGCTAACTCCCACTT
GATCA-TACTTAAGTAGGCTAGGCT----------------------------ATTTTCCATGATCACTGATTCGCGTAT
TTCGGTGGGGTCTGAAATACTTGTAGCCCTGAAATTTCGAGCCAGTTCCAATCCAAAATTTAAATCAGGTTAAATTTTAA
TAAAA-----------------TTTACTGGGTTTTCAAAACTCAAAAACCGAAAGAATTTCTGGAATTTCACGTATTTCG
GCGACGTCCAAAAGTTTTTCGTTTCCGAAATGAAGAACCTTGGCTACTGA---TATCTTCTTTCACAATTGCTGTAGTGT
AACATTCCTGCATTTTGTGGAGCCCCGGCAAAA-GCAAGGCAAGTAGGCA----AA-----GGCACCCAGAAACAGTTCG
GAAACCAGGAAGCAGAGCATCTTTTTACATAATCCCAGTTCTACTCTCCCCTGCTTCGTT-----CTCTTCACAACCAAC
TCCTGTCGCCGGTATA-------AAAACCATGGAGGCGCGCTTCCGGTCGTTTCAACTTTCAACTCGACATCAA------
--------------AGGAACATTCCATGGCTGACCCAAGCAGCACGTGCGCGC---------CTCCTTCTTCTTCTTCCA
CGTCGCCGCGGCTCAGCGCCGGCGTCGTCAACTTCTTGGCGCGCCGTGCCATGAACACGCACCACCGAGCAGCAGC----
--AGCAGCAGCATTTCCC---------CTCCACTCGCCGGGCTCCTCCACCGGCTCCCCCGACTCCGTGC----------
-----CGTGGAGCAGCTGCCACCACCACCACGCCCCGCCCACGCCGCCCCT---GCCGCCGTTCGACA---------C--
-------CGACGAGAAGCTCCTGCTCAACACGCTCTCCCAGCACG---------------A---GGCAG------CGGCG
GCGCCGCTGAAGCAAGAGGCAACGGAC------------------GCCG---AGGTGGCGCCCGGCGTGG---GCGGCGG
GCGCGCGTTCCGCGGCGTGCGGAAGCGGCCTTGGGGCAAGTACGCGGCGGAGATCCGGGACTCGACGCGGAATGGCGTCA
GGGTTTGGCTGGGCACGTTCGAGAGCCCGGAGGCGGCGGCGCTGGCCTACGACCAGGCGGCCTTCGCCATGCGCGGCTGC
GCCGCCGTCCTCAACTTCCCCGCCGACCAGGTCCGCCGCTCGCTCGAGGGCGCGGGGGAAGACGTGCGCGGCCGCGCCCA
CGGGGTGTCGCCCGTGCTGGCGCTCAAGCGGCGGCACTCCATGCGGAGCCGAAAGGCCACGGCGTCGTCGCCGTGCCG--
---------CAAGGCCGCCCGTGG------CCGGCCGGAGGGCGTGGTGATGGAGCTGGAGGACCTTGGCGCGGAGTACC
TCGAGGAACTGCTCGGCGCCGCCGACGACATGACGGCCTCGGCCTACGACTCATGGTGCTCGGGCCATCATTCCATCTGA
TGCAA-GAAGAGAGCTGGT-------AACGATGGATTGATCACCATGACACCATTTGTGTAGCTCTTTCTTC-------C
CTGTTGCTGT---TGCTGTTGTGGGCG----------------GTTCCAGAATTTAGATAGCTTCTGTAGGATGGAGAAA
CGGGTTG-CGAGACCGACGGCATGTTTGGGTCTGAATTTGGATAGCCGT----GAAAGATGTGAAGTGACAAATGTTTGG
GCTTGAATCCAGTC--------------AAAATGACTGCATGGTTGTAGATAATTCATAGGCGCCAAGTTCGAATTTTGT
GTGGCTTGGGTTGCTG----TTTT---------T--TTCTTTTAAAAAAGAAACAGAAAAGATACACGGGATTGTTGTTA
GT---TTTTATCGTTGGCGGGTAAAGTGGACT-AGATAAAAGAAGCATGCATGTCCTGATCGACCAGGTCAAGTCCAAAG
TCCAAACATGTCT-GCCTGCAAGTTG-ACGTTGGTGTGTGTTGGTAGTCAGTCACGTACGAGTATATGTGTACAAGCTAA
ACACAATACTAAGATCATCTTCAATAGATGATGCAAATTTGAGGATGCAAAAAGGAGATGT--AAACATTTACATCTTAA
AAAAAATGCATTTTACATCTTAAAAAAAAAGAGTCAACTCCAACCGATGATGCA--------------------------
-----------------TATTGGAGATGTAAAAGAGCAACTCCAATAGATGGTGCAAAGTGGAGATGTGAAACCAGCCGC
CGGCTGCGTGGCTGTGTACAACTAGTCGGCATGAGCGCTGATGGCCGAGCGCCGAGAGACAGGAGGATCGTCGGTGGACC
GAGCGGCGACCGAGCGACGAGAGCCGGGATGTCGAATGCGGCGGGAGGAGCTCGAATGGCCGGCGGTGCGGCTATGAATC
GAGCGGTGGATTGGTCGCGGCGGGGCG-----ACGACATTGCGGCACGAGAAGATCAAGTCTGGCGGCGGAAAAGCGCCG
GCGGCGTGGAGGCATGTGTGCCGCTCGAATTCGGCGGAGCGGGGCGGGGGAGGGGGTGTGGGGCTCAAATCACGCGGTGC
ACGC
>chr1D_1
TGGAACCAAGAAAGAAGAAGGAAGGAACAAGCGAAAGAAGGAGAGAAGGAAGATTCC-------------AAGGAGCAGC
GCTGCTGGGGCCAT-CGAGGTGCAATGCATCCATGCATGCATGCACGTCCCGCCTAATTACC-GGCTATGCTTGCTTGGA
AATTTCGGACAAATTAAAAAGGAC-GTGATGGTGAGGTGCAAATATTGACTCACGTGCGGCCTCATCACGTACCACCATT
TGCAGCAACATAATTAATCGTCT--------------CA--------------CCCAGCTAAATTGCAGCCAGTGGAGTG
TG-----TTATGCTTGGAAATTTCAGAGTGATGCCAGACGACGAATGGTGGATTGGTGGTAATAATATGCCAGATGGTAG
CCACTGCCTAATTCAGAGCGAATATGACA-----AGGT-----CAGGTGCAATGGACCTCAACATTGACTCACGTGCGGC
TAAGCTC-----GCTCACCG--------TTTGAGTGCAGTGGAGTGTACACCACTACCACCCTCTGGCTAACTCCCACTT
GATCA-TACTTAAGTTGGCTAGCTCAGCTACAACGAGTAATATTACCACCATGATTTTCCATGATCACAGATCCGCATAT
TTCGGTGGGGTCCGAAATACTTGTAACCCTGAAATTTCGAGCCAGATTCAATC---------------------------
TAAAA-----------------CTTACTGAGTTTTGAAAACTCAAAATCCGAGAGAATTTCTGAAATTTCACGTATTTCA
GCGACGTCCAAAAGGTTTTCGCTTCCGAAATAAAAAACCTTGGCTGCTACTATCATCTTCTTTCACAATTGCTGTAGTGT
AACATTCCTGCATTTTGTGGAGCCCCGGC-AAA-GCAAGGCAAGTAGGCAGGCAAA-----GGCATCCGGAAACAGTCGG
GAAACCAGGAAACAGAGCA--TTTTTATATGATCCCAATATTACCCTCCCCTGCTTCGTT-----CTCTTCCCAACCAAC
TCCTGTCGCCGGTATA-------AAAATCATGGAGGCGCGCTTCCGGTCGTTTCAACTTTCAACTCCACATCAA------
--------------CGGAACATTCCATGGCCGATCCAAGCAGCACGTGCACG------------CCTTCTTCTTCTTCCA
CGTCGCCGCGGCTCACCACCGGCGTCGTCAACTTCTTGGCGCGCCGTGCCATGACCACGCACCACCGAGCAGCAGCGGCG
GCAGCAGCAGCATTTCCC---------CTCCACTCGCCGGGCTCCTCCACCGGCTCCGCCGACTCCGTGCCGTCTACGTG
GAGCACCTGC------------CAGCACCACGCCCCGGCCACGCCGCCTCC---GCTGCCGTTCGACACCAGCGACGC--
-------CGACGAGAAGCTCCTGCTCAGCATGCTCTCCCGGCACCAGGGCGCCTCCGCGCACGGGGCAG------CGGTG
GAGCCGCTGAAGCAGGAGGCCACCGAC------------------GCCGC---------------GGTGG---ACGCCGG
GCGCGCGTTCCGCGGCGTGCGGAAGCGGCCATGGGGCAAGTTCGCGGCGGAGATCCGGGACTCGACGCGGAACGGGGTCA
GGGTGTGGCTGGGCACGTTCGAGAGCCCGGAGGCGGCGGCGCTCGCCTACGACCAGGCGGCCTTCGCCATGCGCGGCGGC
GCCGCCGTCCTCAACTTCCCCGCCGACCAGGTCCGCCGCTCGCTCGAGGGCGCGGGGGAAGACGTGCGCGGCCGCGCCCA
CGGGGTGTCGCCCGTGCTGGCGCTCAAGCGGCGGCACTCCATGCGGAGCCGAAAGGCCACGGCGTCGTCGCCGTGCCGC-
-AAAATAGCCAAGTCCGCCCGTGG------GCGGCCGGAGGGCGTGGCGATGGAGCTGGAGGACCTTGGCGCGGAGTACC
TCGAGGAACTGCTCGGCGCCGCCGACGGCATGACGGCCTCGGCCTCCGGTTCATGGCGCTCGAGCAATCATTCCATCTGA
TGCAA-GAAGAGAGTTGGC-------AACGATGGATTGATC--------GCCATTTGTGTAGTTCTTTCTTCGGTCTCCC
CTTCC----C---TGTTGCTGTTGC------TGGTCGGGTCTCGTTCCAGAATTTAGATAGCTTCTGTAGGATTGAGAAA
AGGTTTGCTGTTTTT--------------------------------------------------GTGACAAATGTTTGG
GTTTGAATCCAGTC--------------AAAATGAATGCATGGTTGTAGATAGTTCATAGGCGCCAAGTTCGAATT--GT
GTGGCTTGGGTCGCTGTT---TTT---------T--TTCTATTAAAAAAGAAACACAAAAGGTACATGGGATTGTTGTTA
GT---TTTTTCCAGTGGCGGGTAAAGTGAACT-GAAAACAAGATGCATGCATGTCCTGATCGACCAGGTCAAGTCCAAAG
TCCAAACATG-----CCCGCAAGTCG-ATGTTTGGTGT------------------------------------------
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----
>chr1D_134
CTAATTAA------------------------------------------------------------------------
-------------------------------------------------------------C-GGCTATGCTTGCTTGGA
AATTTCCGACAAATTAAAAATGGAGGTGATGGTGAGGTGCAAATATTGACTCACGTGCGGCCTCATCACGTACCACCATT
TGCAGTAGCATAATTAACCGTCT--------------CACTCAGCTCACACCACCCAGCTAAATTGTAGCCAGTGGAGTG
TG-----TTATGCTTGGAAACTTCAGAGTGATGCCAGACGACGAATGGTGGATTGGTGGTAATAATATGGCAGATGGTAG
CCACTGCCTAATTCAGAGCGAATATGAGAAGGTCAGGT-----CAGGTGCAATGGACCTCAACATTGACTCACGTGCGGC
TAAGCTT-----GCTCACCATTTGAGCTTTTGAGTGCAGTGGAGTGTATACCACTACCACCCTCTAGCTA-CCCCCACTT
GATCA-TACTTAAGCTGGCTAGCTCAGCTACAACGATTAGTATTACCACTATGATTTTCCATGATCGCAAATTCGCATAT
TTCGGTGGGGTCTGAAATACTTGTAACCCTGAAATTTCGAGCCAGATTCAATCCAAAATTTAAATTGGGTTAAATTTCAT
TAAAA-----------------TTTACTGAGTTTTGAAAACCCCAAAACCAAAAGAATTTCCGAAATTTAACGTATTTCA
GCGACGTCCAAAAGGTTTTCGCTTCCGAAATAAAGAACCTTGGCTGCTGCTACTATCTTCTTCCACAATTGCTGTAGTGT
AACATTCCTGCATTTTGTGGAGCCCCAGC-AAA-GCAAGGCAAGTAGGCA----AA-----GGCACCCAGAAACAGTCGG
GAAACCAGGAAGCAGAGCAT-TTTTTAGATAATACCAATTCTACCCTCC-------------------------------
-CCTGTCGCCGGTATA-------AAAACCATGGAGGCGCGCTTCCGGTCGTTTCAACTTTCAACTCCACATCAA------
--------------AGGAACATTCCATTGCCGATCCAAGCACCACGTGCGCGC---------CTTCTTCTTCTTCTTCCA
CGTCGCCGCGGCTCACCACCGGCGTCGTCAACTTCTTGGCGCGCCGTGCCATGACCACGCACCACCGAGCAGCAGC----
--------AGCATTTCCC---------ATCCACTCGCCGGGCTCCTCCACCGGCTCCGCCGACTCCGTGC------CGTG
GAGCAGCTGC------------CACAACCACGCCCCGGCCACGCCGCTCCT---GCCGCCGTTCGACA---------C--
-------CGACGAGAAGCTCCTGCTCAACGCGCTCTCCCAGCACCACGACGCCTCCGCGCACGGGGCAG------CGGCG
GCGCCGCTGAAGCAGGAGGCCACCGAC------------------GCGGC---------------GGTGG---GCGGTGG
GCGCGCGTTCCGCGGCGTGCGGAAGCGGCCCTGGGGCAAGTTCGCGGCGGAGATTCGGGACTCGACGCGGAACGGCGTGA
GGGTGTGGCTGGGCACGTTCGAGAGCCCGGAGGTGGCGGCGCTCGCCTACGACCAGGCGGCCTTCGCCATGCGCGGCGGC
GCCGCCGTCCTCAACTTCCCCGCCGACCAGGTCCGCCGCTCGCTCGAGGGCGCGGGGGAAGACGTGCGCGGCCGCGCCCA
CGGGGTGTCGCCCGTGCTGGCGCTCAAGCGGCGGCACTCCATGCGGGGCCGAAAGTCCACGGCGCCGGCGGCATGCCGC-
-AA---------GGCCGGCCGTGG------CCGGCCGGAGGGCGCGGTGATGGAGCTGGAGGACCTCGGCGCGGAGTACC
TGGAGGAACTGCTCGGCGCCGCCGGCGACATGACGGCCTCGGCCTCCGGTTCGTGGTGCTCGAGCCATCATTCCATCTGA
TGCAA-CAAGAGAGTTGGC-------GACGGTGGGTTGATC--------GCCATTTGTGTAGTTCTTTCTTC-------C
CTGTTGCTGC---TGTTGCTGTTGC------TGGTCGGGTCTCGTTCCAGAATTTAGATAGCTTGTGTAGGATTGAGAAA
ACGGTTATTGAGACCGACGGCATGTTTGGGTCTGAATTTAGATAGCCGTGAGTGAAAAATGTGAAGTGACAAATGTTTGG
GTTTGAATCCAGTC--------------AAAATGAATGCATGGTTGTAGATAGTTCATAGGCGCCAAGTTCGAATTTTGT
GTGGCTTGGGTCGCTGTTATTTTT---------T--TCCTTTTCAAAAAGAATCAGAAAAGGTACAGGGAT----TGTTA
TTATTATTTTTGGTTGGCAGCTAAAGTGGGCT-GGAAAAAAGAAGCACGCATGTCCTGATCGACCAGGTCAAGTCCAAAG
TCCAAAGTCCAAACGCCTGCAAGTTTCATGTTGGTGTGTGTTGGTAGGCAGTCACGTGCGAGTATATGCGTACAAGATAA
ACACAATACTA---------------------------------------------------------------------
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>chr1A_372
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-------CTAATCCAGAGCGAATATGACAAGGTCAGGTCAGGTCAGGTGCAATGGACCTCAACATTGACTCACGTGAGGC
TAATTAAGCTTGGCTCACCA--------TTTAAGTGCAGTGGAGTGTATACCACTACCAGCA-----CTA-CTCCCACTT
GATCATTACTTAAGCTGGCTAGCTCAGCTACAACGATTAACATTACCACCATGATTTTTCATGATCACAGATTCGCATAT
TTCGGTGGGGTCCGAAATACTTGTAACCCTGAAATTTCGAGCCAGATTCAATC---------------------------
TAAAATTTTACTTAGGTTAAATTTTACTGAGTTTTGAAAACGCAAAATCTGAAAGGATTTCCGAAATTTCACGTATTTCG
GCGACGCCCAAAAGTTTTTCGTTTCTGAAATGAAGAACCTTG---GCTGCTACCATCTTCTTTCACAATTGCTGCAGTGT
AGCATTCCTGCATTTTGTGGAGCCCCGGC-AAAAGCACGGCAAGTAGCCA----AAGGGACGGCATCCGGAAACAGTCGG
GAAACCTGTAAGCAGAGCACGT------------------------TCCCCTGCTTCGTT-----CTCTTCCCAACCAAC
TCCTGCCACGGTGCCACCGGTATAAAACCATGGAGGCGCGCTTCC-----------------ACTCGACATCAA------
--------------AAGAACATTCCATGGCTGTTCCAAGCGGCACGTGCGCGG------CTTCTCCTCCTTCTTCTTCCA
CGTCGCCGCGGCTCAGCGCCGGCGTCGTCAACTTCTTGGCGCGCCGTGCCATGACCACGCACCACCGAGCAGCAGCGGCG
---GCAGCAGCATTTCCC---------CTCCACTCGCCGGGCTCCTCCACCGGCTCCGCCGACTCCGTGC------CGTG
GAGCAGCTGC------------CGCCACCACGCCCCGGCCACGCCGCCCCC---GCCGCCGTTCGACA---------CTA
ACGACGCCGACGAGAAGCTCCCGCGCAACATGCTCTCCCAGCACCAGGACGGCTCCGCACACGGGACAG------CGGCG
GCGCCGCTGAAGCAGGAGCCCACCGAC------------------GCCGG---------------GGTGG---ACGCCGG
GCGCGCGTTCCGCGGCGTGCGGAAGCGGCCTTGGGGCAAGTACGCGGCGGAGATCCGGGACTCGACGCGGAACGGCGTGA
GGGTGTGGCTGGGCACGTTCGAGAGCCCGGAGGCGGCGGCGCTCGCCTACGACCAGGCGGCCTTCGCCATGCGCGGCGGC
GCCGCCGTCCTCAACTTCCCCGCGGACCAGGTCCGCCGCTCGCTGGAGGGCGCGGGGGAAGACGTGCGCGGCCGCGCCCA
CGGGGTGTCGCCCGTGCTGGCGCTCAAGCGGCGGCACTCCATGCGGAGCCGAAAGGCCACGGCGTCGTCGCCGTGCCGC-
-AAAATAGCCAAGGCCGCCCGTGG------GCGGCCGGAGGGCGTGGTGATGGAGCTGGAGGACCTTGGCGCGGAGTACC
TCGAGGAGCTGCTCGGCGCCGCCGACGACATGACGGCCTCGGCTTCCGATTCATGGTGCTCGAGTCATCATTCCATCTGA
TGCAA-CAAGAGAGTTGGCAAGTGGCAACGATGGATTGATC--------ACCATTTGTGTAGTTCTTTCTTC-------T
CTTCC----C---TGTTGCTGTTGCTGGCCGTGGTCGGGTCTCGTTCCAGAATTTAGATAGCCTCTGTAGGATTGAGAAA
CGGTTTG-TGAGACCGACGGCATGTTTAGGTCTGAACTTAGATGGCC----GTGAAAGATGTGAAGTGTCAAATGTTTGG
GTTCGAATCCAGTC--------------AAAATGGGTGCATGTTTGTAGAT-GTTCATAGGCGCCAAGTTCAAATTTTGT
GTGGCTTGGGTCGCTG-----TTT---------T--TTCTTTTCAAAAAGAATCAGAAAAGGTACACGGGATTGTGGTTA
GT---TTTTATCGTTGGCGGGTAAAGTGGACT-GGAAAAAAGAAACATGCATGTCCTGATCGACCAGGTCAAGTC-AAAG
TTCAAACA----T-GCCTGCAAGTTG-ATGTTGGTGTGTGTTGGTAGGCAGTCACGTGCGAGTATATGCGTACAAGATAA
ACACAATAAGAGCA-----TCCAATAAAAGATGCAAATTTGAAGATATAAAACAGAAGATAT------------------
--------------------------AAAGG---CAACTCGAGCAGATGATGTATATATTGGAGATGTAAAAGAGCAATT
CGAGTAGATGATGTATATATTGGAGATGTAAAAGAGCAATTCCAACAGATGATGCAAAGTGAAGATGTAAAACCGGCCGC
CCGCCGTACGGATGTGTACAACTAGTCTGCATGAGCGCCGGTGGCCGAGCATCGAAAGACGGGAGGAGCACCGGTGGACC
GAGCGGCGGCCGAGCGACGAGAGCCGGGAGGTCGAATGCGGCGGGGGGAGCTCGAATGGCCAGCGGCACGGCCGCGAATC
GAGCGGCGAATTGGTCGCGGCGGGGCGGGGCGACGACCGTGCGGCGCGAGAAGGTCGGGTCTGGCGGCGGAA-AGCAACG
ACGGTGTGGAGGTAGGTGTGCGGCTCGAATCTGACGGCGGCAGGGCGGTCGGGG--------------------------
----
>chr4A_857
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---------AAGCAGAGCAT-TTTCCCAGTAATTCCAAATCTACCCTCCGCTGCATCATTCTCACCTCTGCTCAACCAAC
TCCCGCCACCGGTATA-------AATTCCATGGAGCCGCGCCTCC-----------------ATCCGTTCCAGCTTCCAA
CCCGACATCCCACGAGAAAAACTCCATGTCTGATCCCAGCGCCAGCAGCACGGCCTCTTCTTCTCCGACTTCTTCATCTA
CGTCGCCCCGGCTCACCACCGGCGTCGTCAACTTTCTGGCCCGTCGTGCGGTGACCACGCAGCAGAACCACCACC-----
-TACCAGCAGCCGAAG---CATTCCCGCTGCACTCGCCGGGCTCCTCCACCGGCTCCGCCGACTCCGCGC----------
-----CCTGG------------CACCACCGCGCCCCGGCCACGCCGCCACCTGTTCTTCCGTTCGACA---------CCA
GCGACGCCGACGAGATGCTCCTGCTAGACATGCTCTCCCAGCACCACGAGGTCCAGCACGCCGCGGCCGCACCGACGACG
GCGCCGGCGAAGCAAGAGGCCGACGAG------------------GAGGGCAAGGTGGCACTAGGTGTG---------GG
TCGCGCGTTCCGCGGAGTGCGGAAGCGACCGTGGGGCAAGTTCGCGGCGGAGATCCGGGACTCGACGCGCAACGGCGTGC
GCGTGTGGCTGGGCACCTTCGACAGCCCAGAAGCTGCGGCGCTGGCGTACGACCAGGCTGCGTTCGCCATCCGCGGCGGG
GCCGCCGTTCTCAACTTTCCGGCCGATCAGGTCCGGCGCTCGCTCGAGGGCGCCGCTGACGACGCATGCGGCCGTGCCCA
TGGCTTGTCGCCCGTGCTGGCGCTCAAGCGGCGGCATTGCATGCGGAGCCGGAAGGCCGCGGCGGCCGGCAGGGTGGCG-
-AA---------GGCCGCCACCCGGGGGGCGCGGCCGGAGTGT---GTGATGGAGCTTGAGGACCTCGGCGCGGAGTACC
TCGAGCAGCTGCTTGGCGCCTCCGAGGACA--------------------------------------------------
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----
>chr5D_1029
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--------------------------------------------------------------CTCCGTCTTGTACATCTA
CGTCGCCCCGGCTAACCACCGGCGTCGTCAACGTCCTGGCTCGCCGTGCCATGACCACACAGCAAAACCACCACC-----
-GAGCAGCAGCGGAAG---AATTCCCACTGCACTCGCCTGCCTCCTCCACCGGCTCCGCGGACTCCGCGC----------
-----CATGG------------CACCACCGCGCCCCAGCCACGCCGTCACCTGTGCTCCCGTTCCACA---------CCA
ACGACGCCGACGAGATGCTCCTGCTCCACATGCTCTCCCAGCACCACGAGGTCCAGCACGACGCGGCCGCACCCACGATT
GCGCCGGTGAAGCGGGAGGCCAGCCAAGAGGAAGAGGAAGACAAGGCGGC---------------CGTGG---ACGTCGG
GCGTGCGTTCCACGGGGTGCGCAAGCGACCGTGGGGCAAGTACGCGGCGGAGATCCGTGACTCGACGCGGAACGGCGTGC
GGGTGTGGCTGGACACCTTCGACAGCCCGGAAGTTGCGGCGCTGGGGTACGACCAAGCTGCCTTCACCATCCGTGGCGGC
GCTGCTGTGCTCAACTTCCCCGCCGACCATGTCCGGCGTTCGCTCGAGGGCGCAGCAGACGATGTATGCGGTCGTGCCCA
CGGCGTGTCGCCCGTGCTGGCGCTCAAGCGGCGGCACTCCATGCGGAGCCGGAAGGCCACGACGGCGGGCAGGAAGGTGT
AAA---------GGCCGCCACCCGGGGGGCGCAGCCAGAGGGCATGGTGATGGAGCTTGAGGACCTTGGTGCGGAGTACC
TCGAGCAGCTGCTCGGCGCCTCCGAGGACA--------------------------------------------------
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----
>chr4A_1039
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------------------------------------------------------------------------TTCATCGA
CCTCCCGGCGGCTCACCACCGGCGTCGTTAACTTCTTGACCCGCCGTGCCATGACCACGCAGTAGAACCACCACC-----
-CAGCAGCAGCATCCCGCCAACTCCCGCTCCACTCGCCGGGCTCGTCCACTGGCTCTGCCGACTCCACGC----------
-----CATGG------------CACCACCGTGCTCTGACCACGCCGCCCCT---GCTCCCGTTCGACA---------CCA
ACGATGCCGACGAGATGCTCCTGCTCCACATGCTCTCACAGCACCAGCAACACACGCACAA---GGCCC------TGGCG
GCGCCGGTGAAGCTAGAGGCGGCCGAC------------------GGAG---AGGAAGCAGGTCACCAAGTCAGCGACGG
GCGCGCGTTCCGCGGGGTGCGCAAGCGGCCATGGGGCAAGTACGCGGCGGAGATCCGTGACTCGACGCGGAACGGCGTGC
GTGTGTGGCTGGGCACCTTCGACAGCCCGGAGACTGCGGCGCTGGCATACGACCAAGCTGCCTTCGCCATCCGCGGCGGC
GCCGCCGTGCTCAACTTCCCCGCCGACCATGTCCGGCGTTCGCTTGAGGGCGTAGCAGACGACGTGTGCGGTCGTGCCCA
TAGCGTGTCGCCCGTGCTCGCGCTCAAGCGGCGGCACTCCATGCGGAGCCGGAAGGCCACGGCGGCGGGCAGGAAGGTG-
-AA---------GGCCGCCACCCGGGGGGCGCAGCCAGAGGGCATGGTGATGGAGCTTGAGGACCTCGGTGCGGAGTACC
TCGAGCAGCTGCTCGGCGCCTCCGAGGACA--------------------------------------------------
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----
>chr5B_1054
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-------GCGGCTCACCACCGGCGTCGCTAACTTCTTGACCCGCCGTGCCATGACCACGCAGCAGAGTCACCACC-----
-CAGCAGCAGCATTCCACCAACTCCCGCTCCACTCGCCGGTCTCCTCCACTGGCTCTACCGACTCCACGC----------
-----CATGG------------CACCACAGTGCTCCGACCACGCCGCCCCT---GCTCCCGTTCGACA---------CCA
ACGATGCCGACGAGATGCTCCTGCTCCACATGCTCTCACAGCACCAGCAACACACGCACAA---GGCCG------TGGCG
GCGCCGGTGAAGCGAGAGGCCCCCGAC------------------CGAC---AGAAAGCAGCTCAAGCAGCCAGCGCCGG
GCGCGCGTTCCGCGGGGTGCGCAAGCGGCCGTGGGGCAAGTACGCGGCGGAGATCCGTGACTCGACGCGGAACGGCGTGC
GGGTGTGGCTGGGCACCTTCGACAGCCCGGAAGATGCGGCACTAGCGTACGACCAAGCTGCCTTCGCCATCCGCGGCGGC
GCCGCCGTGCTCAACTTCCCCGAAGACCAGGTCCGGCGCTCCCTCGAGGGCGCCGCTGACGACGTGTGCGGCCGTGCCCA
TGGCGTGTCGCCCGTGCTGGCTCTCAAGCGGCGGCACTCCATGCGGAGCCGGAAGGCCACGGCGGCGGGCAGGAAAGTG-
-AA---------GGCCGCCACTCGGGGGATGCAGCCAGATGGCATGGTGATGGAGCTTGAGGACCTTGGTACAGAGTACC
TGGAGCAGCTGCTCGGCGCCTCCGAGGACA--------------------------------------------------
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----
>chr1B_1460
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--------------------------------GCGGCGGCACTCGCCTACGACCAGGCGGCCTTCGCCATGCGCGGCACC
GCCGCCGTCCTCAACTTCCCCGCCGACCAGGTCCGCCGCTCGCTCGAGGGCGCGGGGGAAGACGTGCGGGGCCGCGCC--
------------------------CAAGCGGCGGCACTCCATGTGGAGCCAAAAAGCCACGGCGCCGGTGGCGCGCCG--
---------CAAG---GCCCGTGG------CCGGCCGGAGGGCGTGGTGATGGAGCTGGAGGACCTTGGCGCGGAGTACC
TCGAGGAGCTGCTGGGCGCCGCCGACGACATGACGGCCTCGGCCTCCGGTTCGTGGTGCTCGAGCCATCATTCCATCTGA
TGCAAAGAAGAGAGTTGGG-------GACGATGGGTTGATC--------GCCATTTGTGTAGTTCTTTCTTC-------C
CTTCC----C---TGTTGCTGTTGC------TGGTCGGGTCTCGTTCCAGAATTTAGATAGCTTGTGTAGGATTGAGAAA
CGGCTTG-T----------------------CTGAATTTAGATAGCC----GTGAAAGATCTGAAGTGACAAATGTTTGG
GTTTGAATCCAGTC--------------AAAATGAATGCATGGTTGTAGAT-----------------------TTTTGT
GTGGCTTGGCTCGCTG-----TTTTTTCTTTCTT--TTCTTTTCAAAAAGAAACAGAAAAGGTACACGGGATTGTTGTTA
GT---TTTTTCAGTTGGCGGGTAAAGGGGGCTGGAAAAAAAGAAGCAGGCATTTCCTGATCGACTAGGTCAAATCCGAAG
TCCAAACA----T-GCCTGCAAGTTG-ATGTTGGTTTGTGTTGGTAGGCAGCCACGTGCGAGTATATGTGTACAAGATAA
ACACAATACTAAGAGCATCTCCAATACATGATGCAAATTTAAAGATGTAAAACACGAGATGTAAAAAATTTACATCTTT-
AAAAAATGCATTTTACATCTTCAAAAAAAGG---CAACTCC---------------------------------------
-------------------------ATGTAAAAGAGCAACTCCGATAGATGATGCAAAATGGAGATGTAAAACTGGCCGC
CGGTTGCGTGGTTGTGTATAACTAGTCGGCATGAGCGCCGGTGGCCGAGCGCCGAGAGGCGGGAGGAGCGACGG------
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----
>chr1B_1637
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-------------------------------------------------CGAAAGGTCACGGTGTCGTGGCCGTGCTGC-
-AA---------GGCCCGT-------------GGCCAGAGGGCGTGGTGATGGAGCTGGAGGACCTTGGCACGGAGTACC
TCGAGGAAATGCTCGCCGCCGCCGTCGACATGACGGCCTCGGCCTCCGATTCATGGTGCTCGAGCCATCATTCCATCTGA
TGCAA-GAAGAAAGTTGGC-------GACGATGGATTGAT---------ACCATTTGTGTAGTTCGTTCTTC-------T
TCGTTGCTGTTGTTGTTGATGTTGA------TGGTCGGGTCTCGTTGCAGAATTTGGATAGCATATGTGGGATTGAGAAA
CAGTTTGCGGAACG--------------------------GATGGCC----GTGGAAGATCTGTAGTGACAAATGTTTGG
GTTTGAATCCAGTCCCCCTTTAAAAAAAAAGATGAATGCATGGTTGTAGATAGTTCATAGGGGCCAAGTTCGAATTTTGT
GTGGCTTGGCTCGTTG-----CTTTTTATTTTCTTCTCTTTTGAGAAAGGAATCATAGAAGGTATACGGAATTGCTGTTA
GTATTTTTTTTCGTTGGAGGGCGAAGCGGACT-GG-AAAAAAAAACATGCATGTCCTGATCGAGCAGGTCAAGTC-AAAG
TCCAAACA----G-GCGTGCAAGTTG-ACGTCGGTTTGTGTTGGTAGGCAGTCACGTGCGAGTAT---------------
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----
>SNPs
--------------S--S-----------S----------------S---------SSSSSSSSSSSSSS----------
--------S-S-SSS----------------------------------------------SS--S---S----------
-------S-S----------S---S--S---------------------------------S------------------
-----------------------SSSSSSSSSSSSSS-------------------------------------------
SSSSSSS--------------------SS--------S---------------------------------S--------
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---------------S------SSS-------------------------------------------S-------S---
-------------------------S-------------------S-S-----------------SS----------S-S
-----------------------------S-----S---------------------------S----------------
---------------------------------------------S---S------------------------------
-----------------------------S-----------------------------------------------SS-
--------------------S------S---------S------S--------------------------S--------
--------------------------------------------------------------------------------
---------------------------------S----------------------------------------------
------------------------------------------------------S-------------------------
---------------------------------------------------------S----------------------
------S---SSSSSSSSSSSS---------------S------------------------------------------
--------------------------------------------S-----------------------------------
--------------------S--S-----------------------------------S--S-----------------
------------------------------------------------------------------------S-------
----S------------------------------------------------------------------------S--
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---------------------------------------------S---S------------S-----------------
--------------S---S----------------------SSSSSSSS-------------S-----------------
---------------S--S---S-SS-----------------------------------------------S------
--------S------------------------------S----------------------------------------
-S---------------------------------S----------------S---------------------------
-----------S-------------------------------------------------S------------------
---------------------------------S--S-------------------------------------------
----------SS-----------------------------------S---------S------------------S---
--------------S-----S-----S---------------S----S----SS--SSSSS-----S-----------SS
---------------------S-------S-SSS--------S-S-------S---------------------------
---------------------------------------------------S----------------S-----S-----
-----------S--------------------------S-S-------------------S------S--S---------
--------S--------------------S---------------S---------------S----SS----SSS-----
------S-S----------------------------SS------S-------S--SS--------------S---SS--
S---S-------S-S------S--------SS-S---S-SSS--SS--SSS---SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS
>forward_222
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------------------------------------------ATATTGACTCACGTGCGGCT------------------
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>reverse_2179
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------------------TTGTGGGCGGTTCCAGAATT------------------------------------------
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----
