>input_sequence_68175
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-------------------------------------------ATGCCCAAGGGCAGCCTCGAGAACCACCTCTTCCGAA
GTACGTAATCCA-TCCACCATGCAATGCATCCATCGCCATTGGTCGATCTCGATCCATCCACACGCTGCACTTTGCTCTT
CGCTGACCTCTCCTCGATCCATGCATGGCGCAGGGGGCGGCTCGTTCGAGCCGCTGTCGTGGGCGACGAGGCTGAAGATC
GCCGCCGGCGCCGCGCGGGGGCTGGCGTTCCTGCACTCGCCAGAGACGCAGATCATCTACCGGGACTTCAAGGCGTCCAA
CATCCTCCTCGACCACGACTTCGCCCCGAAGCTGTCCGACTTCGGGCTGGCCAAGAGCGGGCCGGCGGCGGGGCGGTCGC
ACGTCACCACGCGGGTCATGGGCAGCTACGGCTACGCGGCGCCCGAGTACGTCGCCACGGGCCACCTCTACGTCAAGAGC
GACGTCTACGGCTTCGGCGTGGTGTTGCTGGAGCTGCTCACGGGGCTCCGCGCGCACGACCCCAACCGGCCCAGCCACCA
GGCCAACCTCGTCGAGTGGGCGCGCCCCTACATCGCCGGCGGTAGGAAGCTCACCGGGCTCATGGACCAGCGCCTCGCCG
GCCAGTACCCGCCCAAGGCGGCGCTCCGGGCCGCCAGGCTCGCGCACCGCTGCCTCTGCGGCGACCCCAAGGCCCGGCCC
TCCATGGACGACGTCGTCGCCAAGCTCGAGGAGATCGACGCCAGAGGGAGCCGC-GACGCGCTGCCGCCGAGGCCGAGGC
CCGTCCCGGCGACATCACAAAGGTCGCCGTACCGCGGTTCATCCAA------GCCGGCCTGA------------------
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>chr5A_1_TraesCS5A01G497700
ATCCCTTTCTGTTACTGTTACTTACATGATAATGTCAATGGAAAACATTTCCCTGCGGGTTCACCCCTTTCCAGCTGGTC
GTTGTCTTGTGCTATGGCCTATAGTATAGGTGTGTGTACAATTCTGGTCAACCTCCCCTTACCTATAGTTGACAAGTACT
AGTAGTATGCGTGATAATTAATGCCAGTAAGCAACAAGCTGCATTTTTCAACTCCATCAATTTGCTGGTTAATTTGCTTC
CAATCCATGCCGTCACCTCGTAGTTCATCGATTGCACCTCGTGTATGTACTTCCTCTATTTTGTTTAGTCTGCATATAAG
ATTTGATTAAAGTCAACTTTATGAAAAAAAAATGTATCAACATCCACAATACTAAAATTATATGTCATGAAAATTAATTT
TATCATGCATCTAATAACATTGATTTCATAGTGGATATCTTTTCCTATAAAGCTAGTCAAAATTTACAAAGTTCGACTTT
GACCAAATTTTATATGCAAACTAAAAAGAAACGAAGGGAGTATTAGTTATTCCCAGCTGTCCATGTTCATTTTGGGTTGT
GTGCTCTCTGGCACTACTGGCCAGCACATGAGCTGGGTTTCACCTTTAGTTTC---AGAAAAATTTCAGCACCAATCGAA
ATCACCGAAATTCAGTGATTTCCACGAACGCTTGAATTCAGTTAAATGTGTGAAAATTGTAAACTATTTTGAAAAATACT
TGAATCCATGTGTACTACTGAAATTGCTGAAATATTTGGGTCGAAAGGTAAATATTTAAGTGTCTACTGAAATTATGAAA
TTCACTTAATTTCATGGTAATTTCACTGAAATTGAAAACCTCACCGGCGTGCCGTGCTAACGCGGCAACTTGTGTTTTTT
TGTGTATGGCAAGTGCAGTCGGAGGTGAACTTCCTGGGGCGGCTGCAGCACCCGAACCTGGTGAGGCTGCTGGGCTACTG
CGGCGACGGCGAGGACCGCGACCTCCTCCTCGTCTACGAGTTTATGCCCAAGGGCAGCCTCGAGAACCACCTCTTCCGAA
GTACGTAATCCA-TCCACCATGCAATGCATCCATCGCCATTGGTCGATCTCGATCCATCCACACGCTGCACTTTGCTCTT
CGCTGACCTCTCCTCGATCCATGCATGGCGCAGGGGGCGGCTCGTTCGAGCCGCTGTCGTGGGCGACGAGGCTGAAGATC
GCCGCCGGCGCCGCGCGGGGGCTGGCGTTCCTGCACTCGCCAGAGACGCAGATCATCTACCGGGACTTCAAGGCGTCCAA
CATCCTCCTCGACCACGACTTCGCCCCGAAGCTGTCCGACTTCGGGCTGGCCAAGAGCGGGCCGGCGGCGGGGCGGTCGC
ACGTCACCACGCGGGTCATGGGCAGCTACGGCTACGCGGCGCCCGAGTACGTCGCCACGGGCCACCTCTACGTCAAGAGC
GACGTCTACGGCTTCGGCGTGGTGTTGCTGGAGCTGCTCACGGGGCTCCGCGCGCACGACCCCAACCGGCCCAGCCACCA
GGCCAACCTCGTCGAGTGGGCGCGCCCCTACATCGCCGGCGGTAGGAAGCTCACCGGGCTCATGGACCAGCGCCTCGCCG
GCCAGTACCCGCCCAAGGCGGCGCTCCGGGCCGCCAGGCTCGCGCACCGCTGCCTCTGCGGCGACCCCAAGGCCCGGCCC
TCCATGGACGACGTCGTCGCCAAGCTCGAGGAGATCGACGCCAGAGGGAGCCGC-GACGCGCTGCCGCCGAGGCCGAGGC
CCGTCCCGGCGACATCACAAAGGTCGCCGTACCGCGGTTCATCCAA------GCCGGCCTGACGACGAACTGATAATTCC
ATCTGTTAACGAATGGCCTTTGATGATTAATTTCTTGATTTCTTTGTTCGCTAGTCAGTTTTGTTTCGCTTCATA-TACT
TGCCTTTGAATTACTAGGTC---------------------------ACTGCCGAACTTGTGGCTTTGTATTCTTGTGTA
CTTTGTCTAGTAGGAGTAACAAAAAATGGCAGGC--ATTTCGATGCACATTCAGAGAAAAAAGAAAGGAGAAGAAACATC
AGTCTAT-AAGCAATCACAGACTGTTGCATACATGTTATGGATTTCTGAAGCAAGGTGTACAGGTGTAATCCCGAGTA-A
TTATTATACAAAAGTAATACCACCAAAAAAACTCTAGCATTCCGTTGTTCTCAAACAAAAAAAG-G-GAGGAAAATAAAA
CATCTCCTATCATCCTATTATGCATGCACCATCGTCGGCCCGAGGT--TGTCTAGGAGTCTAGACAGCTCCCTGCCTCAC
ACATGAGCAG-----------------CACTGATCTTGAATCAGCAGGATTGCATTTTTCGAGACCAGAGATGAGATTGA
TGGACGCATGTATTCTTACAGCGAGCAAAACAATCCGAGTGCACTCATCTGCA--------AATATGTGGATGCAAGTAA
GATCAGTTAACCGTGCCATCGAATTTTACAAGGGAAATGATTTATACTATTTCTGAAAAGAAAATTCAGTCCAGCAATAC
TTACACAAGCGAGAAGGCGTTTCAGCACCGTAA-GGATGCATCTTCGACTCTTCATGACGCTCAAACTGACGCGTGAAGG
CAGGAGACATAATTCTCTCAATTCCACAGCGC----ATGCCTTCAAGCAAGCTTTCGAATGTCTGAAACCTTGAAGGTGC
TTCAGAATTGCAAGACGGATCAAACAAGCCCAGAAAGAACTTACATTTGCCAGGTAACCTGAACATGAGTTCTAGACCTA
ATGCGAAGCTTCAT-TTCGACAAATTCCTATTCTTTCCTATTCTGTACACTAGTTTGGTAACTGCGGTAAACGAGTTTCC
CTATGGCTG
>chr4D_23
----------------------TACATGATAATGTCAATGGAGAACATTTCCCTGCGGGTTCACCCCTTTCCAGCTAGTC
GTTGTCTTGGCCTATGGCCTATC-----GGTGTGTGTACAATTCTGGTCAACCC-------CCTATAGTTGACAATTAGT
AAGCGTGCC------AATTAATGCCAGCAAGGAACAAGCTGCATTTTTCAACCCCATCCATTTGCTGGTTAATTTGCTTC
TAATCCATGCCGTCCCTAGCTCGTCGTC----------------------------------------------------
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-------------------------------------------------GTCCCAGCTGTCCATGTTCATTT-GGGTTGT
GTGCTCTTTGGCACTACTGGCCAGCGCATGAGCTGGGTTTCACTTTTAGTTTAAAAAGAAAAATTTCAGCACCAACGGAA
ATCATCGAAATTCAGTGATTCTGGCCAATGCTTG-----AGTTAAATGTTTGAAATTTGTAAACTATTTTGAAAAATATT
TTAATTCATGTGTACTA---------CTGAAATATTTGGGTCGAAAGGTAACTATTTGAGTGTCTGCTGAAATTATGAAA
TTCAGTGAATTTCATTGGAATTTCACTGAAATTGAAAACCTCACCGGCGTGCTGTGCTAACGTGGCAACTTGTTTTCTTT
TGTATGGCACAAGTGCAGTCGGAGGTGAACTTCCTGGGGCGGCTGCAGCACCCGAACCTGGTGAGGCTGCTGGGCTACTG
CGGCGACGGCGAGGACCGCGACCTCCTCCTCGTCTACGAGTTCATGCCCAAGGGCAGCCTCGAGAACCACCTCTTCCGAA
GTACGCAATCCACTCCACCATGC-ATGCATCCATCGCCATTCA------TCGATCCATCCACACGCTGCACTTTGCTCTT
CGCTGACCTCTCCTCGACCCATGCATGGCGCAGGGGGCGGCTCGTTCGAGCCGCTGTCGTGGGCGACGAGGCTGAAGATC
GCCGCGGGCGCGGCGCGGGGGCTGGCGTTCCTGCACTCGCCGGAGACGCAGATCATCTACCGGGACTTCAAGGCGTCCAA
CATCCTCCTCGACCACGACTTCGCCCCCAAGCTGTCCGACTTCGGGCTGGCCAAGAGCGGGCCGGCGGCGGGGCGGTCGC
ACGTCACCACGCGGGTCATGGGCAGCTACGGCTACGCGGCGCCCGAGTACGTCGCCACGGGCCACCTCTACGTCAAGAGC
GACGTCTACGGCTTCGGCGTGGTGCTGCTGGAGCTGCTCACGGGGCTCCGCGCGCACGACCCCAACCGGCCCACCCACCA
GGCCAACCTCGTCGAGTGGGCGCGCCCCTACATCGCCGGCGGCAGGAAGCTCACCGGGCTCATGGATCAGAGGCTTGCCG
GCCAGTACCCGCCCAAGGCGGCGCTCCGGGCCGCCAGGCTCGCGCACCGCTGCCTCTGCGGCGACCCCAAGGCCCGGCCC
TCCATGGACGACGTCGTCGCCAAGCTCGAGGAGATCGACGCCAGAGGGAGCCGCGGACTCGCTCCCGCCGAGGCCGCGGC
CCGTCCCGGCGGCAGCACAAAGGTCGCCGTACCGCGGTTCCTCCAACTCCAAGCCGGCCTGACGACGAACTGATAATTCC
ATCAGTTAACGAACGGTCTTTCATTAGTTTCTGA---ATTTCTTTGTCAGTTAGGCAGTTTTGTTTTGCTTTATACTACT
TGATTTTGAATTACTAAGTC---------------------------ACTGCCGCACTTGTGGCTTTGTATTCTTGTGTA
CTTTGTCTAGTA------ACACAAAATAGCAGGCATATTCCAATGCACATTCAGAGAAAAAAGAA----GAAGAAACATC
AGCCTAT-AAGCAATCGCAGACTGTTGCATACAGGTTATGGATTTCTGAAGCAAGGTATACAGGTGTAATCCTGAGAGTA
TAATTATACAAAAAGATTACCACC-AAAAAACTCTAGCATTCCATTGTTCTCAAACAAAAAAAAAG-GAGGAAAATAAAA
CATCTCATATCATCCTATTATGTATGCACCATCGTTGGCCAGAGGC--TGTCTAGGAGTCTAGACGGCTCCCTGCCTTAC
ACATGACCAACGCTGTGAAAAAGCCTTCACTGATCTGGAACAAGCAGGATTGCATTTT-CGACATGAGAGATGAGTTTGA
TCGATGAGTGCATTCTTACTGTCAGCTAAACAATCCGAGTGCTCATATCATACTCATCTGCAATATGTGGATGCAAGTAA
GATCAGTTAACCATGCCATCGAATTTTACAAGGGAAATGATTTATACTATTTCTGAAAAGAAAATTCAGTCCAGCAATAC
TTACACAAGAGAGAAGGCATTTCAGCACCGTAAAGGATTCATCTTCGTAC--------CGCTCACACTGACGCGTGAAGG
CATGAAACATAATTGT-TCAATCACACAGCGCATGGATGCCTTCAAGAAAGCTTTCAATG--TTGAAACCTTGAAGGTGC
TTCAGAATTGCAAGACGGATCAAACAAGCCCAGAAAGAACTTACATTTGCCAGGTAACCTGAACATGAGTTCTAGACCTA
ATGCGAAGCTTCATTTTCGACAAATTCCTATTCTTTCCTATTCTGTACACTAGTTTGGTAACTGCGGTAAACGAGTTTCC
CTATGGCTG
>chr4B_500
ACTATAAAGAGGAATGG---------------------------------------------------------------
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----------------------------------AGGGAGTATTAGTTAGTCCCAGCTGTCCATGTTCATCT-GGGTTGG
C-GCTCTCTGGCACTACTGGCCAGCGCATGAGCTGGGTTTCACATTTAGTTTC---AAAAAAAATTCAGCACCAACCGAA
ATCACCGAAATTCAGTGATTTTGGCCAACGCTTGAATTCAATTAAATGTTTGAAATTTGTAAACTATTTTAAAAAACATT
TGAATTCATGTGTACTAGTGAAATTGCTGAAATATTTGGGTCAAAAGGTAAATATTTGAGTGTCTACTGAAATTATTAAA
TTCAGTGAATCTGATTGGAATTTCACTGAAATTGAAAACCTCACCGGCGTGTTGTGCTAACGTGGCAACTCGTTTTTTTG
TGTATGGCAAGC--GCAGTCGGAGGTGAACTTCCTGGGGCGGCTGCAGCACCCGAACCTGGTGAGGCTGCTGGGCTACTG
CGGCGACGGCGACGACCGCGACCTCCTCCTCGTCTACGAGTTCATGCCCAAGGGCAGCCTCGAGAACCACCTCTTCCGAA
GTACGTAATCCACTCCACCATGC-ATGCATCCATCGCCATTGATCGATCTCGATCCATCCACACGCCGCACTTTGCTCTT
CGCTGACCATGATGCATTCT---CATGGCGCAGGGGGCGGCTCGTTCGAGCCGCTGTCGTGGGCGACGAGGCTGAAGATC
GCCGCCGGGGCCGCGCGGGGGCTGGCGTTCCTGCACTCGCCGGAGACGCAGATCATCTACCGGGACTTCAAGGCGTCCAA
CATCCTCCTCGATCACGACTTCGCCCCCAAGCTGTCCGACTTCGGGCTGGCCAAGAGCGGGCCGGCGGCGGGGCGGTCGC
ACGTCACCACGCGGGTCATGGGCAGCTACGGCTACGCGGCGCCCGAGTACGTCGCCACGGGCCACCTCTACGTCAAGAGC
GACGTCTACGGCTTCGGCGTGGTGCTGCTGGAGCTGCTCACGGGGCTCCGCGCGCACGACCCCAACCGGCCCAGCCACCA
GGCCAACCTCGTCGAGTGGGCGCGCCCCTACATCGCCGGCGGCAGGAAGCTCACGGGGCTCATGGACCAGCGCCTCGCCG
GTCAGTACCCGCCCAAGGCGGCGCTCCGGGCCGCCAGGCTCGCGCACCGCTGCCTCTGCGGCGACCCCAAGGCCCGGCCC
TCCATGGACGACGTCGTCGCCAAGCTCGAGGAGATCGACGCCAGAGGGAGCCGC-GACTCGCTGCCGCCGAGGCCAAGGA
CTGTCCCGCCGGCGGCACGAAGATCGCCTTACCGCGGTTCCTCCAA------GCCCGCCTGACGACGAAGTGATCGAAA-
--CTGTTAACG-ACGCTCTTTCATTATTTG--------TTTCTTTGTTAGCTAGGCAGTCTTTTGTAGCTTGATACTTGC
ATCTGATTTATCCTTTTGGTTAACTACTACTAGTACTAGTAGGTTTTACTGCCCCACTTGTGGCTTTGTATTATTGTATA
CTTTTTTGACTTGAAATATGAAACGACCGA---C--ATTTCGATGCACATTCAGAGAGAAAAAGAA-GAAAAGAAACATC
AGTCTATAAAGCAATCACATACGGTTGCATACAGGTTCT-GATTTCTGAAGCAAA-TGTACAGCTGTAAATTTGATGCTA
GTAATTTTACCTCC------------AAAAACTCTAGCATTCCATTGTTCTCAAAGAAAAAAAATATGAGAAAAGGAAAA
CATCTT----------------TATGCACCATTGACGGCCTGAAGCTGTGTCTAGGAGTCTAGACGGCTCC-TGCCTTAC
ACATGACCAACGCTGCGAAAAAGCCTTCACTGATCTGGAACAAGCAGGATTGCAGTTT-CGACATGAGAGATGAGCTTGA
TCGATGAATGCATTCTTACTGTCAGCTAAACAATCCGACTGCTCATATCATACTCATCTGCAATATGTGGATGCAAGTAA
GATCAGTTAACCGTGCCATCGGATTTTACAAGGGAAATGATTTATA---TTTCTGAAAAGAAAATTCAGTCCAGCAATAC
TTACACAAGAGAGAAGGCATTTCAGCGCCGTAAAGGATGCATCTTCGTGG--------CGCTCAAACTGACCCGTGAAGG
CACGAGACATAATTCTCTCAATTCCACGGCGC----ATGCCTTCAAGCAAGCTTTCGAATGTTTGAAACCTTGAAGGTGC
TTCAGAATTGCAAGACGGTTCAAACAAGCCCAGAAAGAACTTACATTTGCCAGGTAACCTGAACATGAGTTCTAGACCTA
ATGCGAAGCTTCATTT-CGACAAATTCCTATTCTTCCCTATTCTGTACACTAGTTTGGTAACTGTGGTAAACGAGTTTCC
CTATGGC--
>SNPs
-SSSSSSSSS-SS-SS-SSSSS--------------------S---------------------------------S---
---------SS-----------SSSSSS-------------------------SSSSSSSS--------------S--S-
-SSS--SSSSSSSSS------------S---S--------------------S-----S---------------------
S-------------S-SSSS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S----------------------S-------
-------------------------S-----------------S-------------------------------S----
---------------------SSS-S-----------------------S-----S----------------------S-
-----S-----------S---------------------------------------S----------------------
----S-S--------S-S----------------------------------S---------S----------S------
---S-SSSS-----------------------------------------------------------------------
------------------------------------------S-------------------------------------
-----------------------S------------------S-------------------------------------
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-----------------------------------------S--------------------------------------
---------------------------S----------------------------------------------------
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------------------------S-------------------------------------------------------
------------------------------------------S-------------------------------------
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----------------------------------------------------------S---------------------
-----------S--S-------------------------S---------------------------------------
-------------S--S----S--S---SSS-SSSSS-----------S-----S-----------S----S--------
---S------------S-------------------------------------S-------------------------
-------------S-S-----------S--------------------------------------S-------------
---------------------------------S--------------------------------------S---SS--
-------------SS-S-------S------------------S-------------------S----------------
------S---------------S-----------------S----S-------------------S-----------S--
------S--S--------------------------S---SS----------------S---S-SS---------S----
-S--S-S---S--------S-SS---S---------------S-SS---SSSS---------------------------
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---------S--------S----------------------------SSSSSSSSSSS----------------------
--S-----------------------------------------------------------S-----------------
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>forward_265
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-----CATGCCGTCACCTCGTAGTT-------------------------------------------------------
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>reverse_1772
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-----------ACATCACAAAGGTCGCCGTA-------------------------------------------------
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>forward_266
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------ATGCCGTCACCTCGTAGTTC------------------------------------------------------
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>reverse_1775
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--------------TCACAAAGGTCGCCGTACC-----------------------------------------------
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>forward_268
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--------GCCGTCACCTCGTAGTTCAT----------------------------------------------------
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>reverse_1937
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----------------GGTCACTGCCGAACTTGTGG--------------------------------------------
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