>input_sequence_68120
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------------------------------ATGGCTTGCTCCATCTTCTGTAGTG---TACTTGTGGTGGTCACCGCGGT
GGTGATC---GGTACGGCTCG---------CGGCAGCAGCGGCTCCGGCGACCATCTCACCGCCGGCTTCACCCGTGTGA
GGCTGACGGAGTCCCAGTTTGTTGTGCAGAAGCCCTACAACGTTCCGCTCGACGCGCGCTACGAGTTCGCCGGCGGCGTG
CGCCGAACGTGGGTCTTCTCCACCGACAAGCCCGCCAGCGCCACCCACCCCGGTGGTGCGCGCACCGAAATCAAGATCAA
CGTATGTAGGCGCCCATCC----GGCATCCGACACCGAACATATAACATATCCTCCTTTTGCGCCCCATCTCATGCTCTC
GCCGGTTGCTTATA--TTAATTCGTG------TGTGTTGTGCCATGGTGCATGGCATGCATGCAGGAGGTGTACACGTCG
GGGGTGTGGCAGTT-CGAGGGTGAGGTGTACGTGCCGGCGGGGACGTCCGGCGCGTCCATCATGCAGATCTTCGGGGCCA
AGCCGGAGCGGCAGGCGACGACGCTGATGCTCCACGTCTACGACGGCAACCTCACCTTCTACCACCACCTGGACAGTGTG
CTCGCCCACGACGTCTACGACCGCTGGCTCCGGCTCAACATCGTCCATGACGTGGGCGCGCGCAACGTCACCGTCTTCGT
CGACGGCGCCGAGAAGCTGCGCTCGAGCAGCCACGGCGCGCCGCACGCCGAGCACTACTTCAAGTTCGGGGTGTACAAGC
AATCACACCACAACCCGTCGCACCGCATGGAGTCACGGTGGAGGAACGTCCGGGTCTTCACCAAGCCATGA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>chr3B_1_TraesCS3B01G159300
ATGAACAGTAAAATCCAAAAAAATAGAAAATAAATTCACAAAAATCTGATATATTTTTTATGATGAACATTGATACATTT
TCTAATTGCATGCAAAATTTCAGGTTGAAATGACATTCGTAGAGGTCCGAGAAAAAAAATTTAAAATCGATGGTCCAAAA
AGACTATTGTTGGAAGCATTTTGGAGCATCAATTTTGTTATTTTTGCCCAGACCTCCATGAATGTCATTTTGACCTGATA
TTTTGCATGCAGTTAGAACATTCATCAATGTTTACCACAACAAAAATTGAGATTTTTTTTGATTTTTTTTACTTTTTTTG
ATTTTACTGTTCATGCAGGAGCATATGAGCTCGGGATGAAAAGAGCACTTTCGGTCTACTCCTTGATTCTTTCTTAGTAC
CACTCTTTTGTCACTTTAAACCATTGTGAATCCCGTCTACTCTTTGAGTCTTCATAGTACCATTCCTTTGTCACGTTCTT
TTTTTAACTAAATGTAAGCTTCAATCTCAGAGGTTATAATTAGGACCCACCACTTAATCAAATGATTTGTCA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGCTTA
TCCACTAAATTTGTTATCCCCTGTCAAGTAAAACTGTCACAAAAAACGTTCATTTTACCATGTGCACACACTTGACGTCA
GGT-------------------------------ACATATGAAATACAAAT-GTGGCGCTCTAAGAACAATGTATTCTGT
TTGATTATGTTTGTTTTACGATAGAGATGCTTGATTATGACAACAAAGTGCATCCACATGCCTAAGTAATTCCGTTTGTA
TGTATCTAGGACAGAAGCACTGGCTGGCCGCTGAAGAATAAATGACAGTAGATGTTACTATCTTCCAGAATGCAAGTCCC
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------TTAGGACTTTGGTGCAAGTGATCAACATATATACTCCTCCTTA
AGCACTGGAGTAGTATATAAATACATCATGCACGTACCTCTTGTTCCAACAACTAACGGTTCTAGACTTCAAGTCATTTG
CAGTGCGTCCGTGCGTGCGTGAGCGACCTCATGGCTTGCTCCATCTTCTGTAGTG---TACTTGTGGTGGTCACCGCGGT
GGTGATC---GGTACGGCTCG---------CGGCAGCAGCGGCTCCGGCGACCATCTCACCGCCGGCTTCACCCGTGTGA
GGCTGACGGAGTCCCAGTTTGTTGTGCAGAAGCCCTACAACGTTCCGCTCGACGCGCGCTACGAGTTCGCCGGCGGCGTG
CGCCGAACGTGGGTCTTCTCCACCGACAAGCCCGCCAGCGCCACCCACCCCGGTGGTGCGCGCACCGAAATCAAGATCAA
CGTATGTAGGCGCCCATCC----GGCATCCGACACCGAACATATAACATATCCTCCTTTTGCGCCCCATCTCATGCTCTC
GCCGGTTGCTTATA--TTAATTCGTG------TGTGTTGTGCCATGGTGCATGGCATGCATGCAGGAGGTGTACACGTCG
GGGGTGTGGCAGTT-CGAGGGTGAGGTGTACGTGCCGGCGGGGACGTCCGGCGCGTCCATCATGCAGATCTTCGGGGCCA
AGCCGGAGCGGCAGGCGACGACGCTGATGCTCCACGTCTACGACGGCAACCTCACCTTCTACCACCACCTGGACAGTGTG
CTCGCCCACGACGTCTACGACCGCTGGCTCCGGCTCAACATCGTCCATGACGTGGGCGCGCGCAACGTCACCGTCTTCGT
CGACGGCGCCGAGAAGCTGCGCTCGAGCAGCCACGGCGCGCCGCACGCCGAGCACTACTTCAAGTTCGGGGTGTACAAGC
AATCACACCACAACCCGTCGCACCGCATGGAGTCACGGTGGAGGAACGTCCGGGTCTTCACCAAGCCATGAATCACACGA
AGCGTGTACGCCGTTTGATGATTTGACTGGTTGCAACCTTGGTTTTAATTTCAGTTTCAGAAATAATTCGACTCCTACCA
AAACTACCGAAGTTGAGTTTGATGATTTGATAACCATGATTTTAAATTTCAGTTCCAA-------CCATGTTTTATAATT
TAATGTTTCCCTTTGGTGTGTGTTAATTTGGACG-------GAAGCTGTGATGAGATCGATGGTGATGATTATTCAACCA
TTTTCGAGCAATTCTAATCTTAAATAAACTTCGCCGGTGATGAGCTGTGCCGGTGGAGAC--CTCGATGGAGGTCGGCAG
CGGCGGCATTTTCCTCCCAGCACTTGCAAGT-----------------CCC-CTTTGGCTAATCTTAGATGTTGAGAATA
TCTTTATTGCCATATCAAACTAAATGGCAACATTTTGTATTTCATGTTCTTAAT-AAAGTAACAAGAATAATTTGACCAG
ACAATGCTAGTTCCTATCATGTGACATATGTGATAAGCAATTTAAACTATTAAAGAAACCAATGCTAATTCTTACACTGA
CCAAACAATGCTAATTGATTAAGATTACATGAATACTATGGATGAGCC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TGCCCAACGAAACTCATGGGATGGGCTTGTCCAACATTTTTGTTGAGTACTTTCTCAATTTGAATGGAATTGTCC
TACATGGCATAATAGTACATCCCTCAAGCCAGCCACAAGACTTCCTCCCTCCTCCCGTGTGGTATTTTACTGCAAACTAG
AAGAACGCCCGTGCGTTGCAACGGGGCCACATTAACTTTAAGTGTTCAATATTAATCATGTTAATATTACATTTAATATT
CTCATACATATCAAGTGACACTGGCGACCTTTTTTACCATCAAAACCTCACACACATACACTCTCCGTACCTCTTCCTCA
CTCTCTCTCCCCCTCTCTCCCCCCCTCTCTCTCTCTCTAACACACACACATATCCATCTTATTGGGTATAGGACCATAAT
CCATCTATTTCACACATATGCTA
>chr3D_374
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GTCTAATCCTTGATTCTTCC-TAGTAC
CACTCTTTTGTCACTTTAAACCATTGTGAAACCCGTCTGCTCTTTGAGTCTTCATAGTGCCACTCCTTTGTCACGTTCTT
TTTTTAATTATATTTAAACTTCAATCTTGGAGGTTATAATTAGGGCTCATTGCTTAATCAAAGGAAGAGATAATTTAAGC
ATACATGGATGCATATGGTGGCTTGTTTAATTGTTGTTTTAATATATATATATATTTATTCGATGAGTTGTTTTACTAAT
ATACTTCCTCCGTTCACAAATATGTGATGCTCTAACATTTTTCTGAATTGGATGCATATACACATGTTTTAGTGTGCTTA
TTCACTTATTTTAGTTCGTATTTAGTCCATATTGAAATATGCAAAACATCTTATACTACGTATTTGTGAACTGGGGAAGT
AATATATAGATATGTAGATAAGATACAAAGGTAGATAGATCAAATACATATGGTGGCGCTCTAAAAACAATGTGGTGTGT
TTGATTATGTTTGTTTTGAGATAGAGAGGCTTGATTATAACAACGAAGTGCATCCACATGCATAAGTAATTCCGTTTGTA
TGCATCTAGGACAAAAGCACTGGCTGGCCGCTGAAGAATAAATGACAGTAGATGTTACTATCTTCCCGAATGCAAGACCC
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------TTAGGACTTTGGTGCAAGTGATCAACATTTATACTCCTTAAGC
AC-----------TATATAAATACATCATGCACGTAACTCTTGTTCCAACAACTAAGTGTTCTAGACTCCAAGTCATTTG
C-GTGCGTCCGTGCGAGAGCGAGCGACCTGATGGCTTGCTCCATCTTGTGTAGCG---TACTTGTAGTGGTCACCGCGGT
GGTGATC---GGCACGGCTCG---------CGGC---------TCCGGCGACCATCTCACCGCCGGCTTCACCCGTGTGA
GGCTCACGGAGTCCCAGTTTGTTGTGCAGAAGCCCTACAACGTTCCGCTCGACGCGCGCTACGAGTTCGCCGGCGGCGTG
CGTCGGATGTGGGTCTTCTCCACCGACAAGCCCGGCAGCGCCACCCACCCCGGTGGCGCGCGCACTGAGATCAAGATCAA
CGTATGTAGGCGCCCATGCATGCGGGCATCTCA----------------------------CGCTCCATCTCACG--CTC
GCACGTTGCTTATA--TTAATTCGTT------TGTTGATCCATGGA-------GCATGCACGCAGGAGGTGTACACGTCG
GGGGTGTGGCAGTT-CGAGGGTGAGGTGTACGTGCCGGCGGGCACGTCCGGCGCGTCCATCATGCAGATCTTCGGGGCCA
AGCCGGAGCGGCAGGCGACGACGCTGATGCTCCACGTCTACGACGGCAACCTCACCTTCTACCACCGCCTGCAGAGTGTG
CTCGCCCACGACGTCTACGACCGCTGGCTCCGGCTCAACGTCGTCCATGACGTGGGCGCGCGCAACGTCACCGTCTTCGT
CGATGGCGCCGAGAAGCTGCGCTCGAGCAGCCACGGCGCGCCGCACGCCGAGCACTACTTCAAGTTCGGGGTGTACAAGC
AATCACACCACAACCCGTCGCACCGCATGGAGTCACGGTGGAGGAACGTCCGGGTCTTCACCAAGCCATGACTCACACCA
T--GCGTATGCAGCTTGATGATTTGGTTGGTTCCAATTCCAACCATG------GTTTCAAATTTCAGTCGACACCTACCG
AAACCACCGAAGCTCAATTCGATGATTTGATAACCATGATTTTAAATTTCAGTTCCAAGTTCCAACCATGTTTTATAATT
TGATATTTCACGCTAGTGTTTGTTAATTTGGACGATGGGATGATGCTGTGATGAGATCAATGATGATGATTATGCAACCA
TTTTCGAGCAATGCTAATTTTAAATAAACTTCGCCCATGATGAACTCTGCCGGTGGAGACCTCTCGATGGAGGTCGGCAG
CGGCGGCATTTTCCTCCCGGCAGCCACTGCCCGCACCCTCGTCAAGTCCCC-CTTTGGCTAATCTTAAATATTGAGAATA
TCTATATTGACATGCCAAACTAAATAGCAACATTTCGTATTTCCTGTTCTTA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>chr3D_644
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ATATCAAATACATAT-GTGGCACTCTAAAAACAATGAACTGTGT
TTGATTTTGTTT--TTTGAGATAGAGACGCCTGATTATAACAACGAAGTGCATCAACATGCCTAAGTAATTCCGTTTGTA
TGCCTCTAGGACAAAAGCACTGGCTGGCCGCTGAAGAATAAATGACATTAGATGTTACTATCTTCCCGAATGCATGTCCC
TTTAGAGCATCTCCAGCCGTTGGCCCCACAGGGGCTTGAAAAATCGCCGCCTGGGGGTGAACCGGTGCAAAAATCGGCTT
GAGGGCGATTGGGTTCCCAGCCGCCGCCCCCCGGTCGCTCTCAGGCGCCGATATCGGCTCAATTTTGACGTAAATTTGCC
CGCTTTTCAGTCCATTTTTGACGCAAAATCGGCCCGCTGTCGGCGCAAATCGGTCCATATTCGCCGTGCTTCAGCGCAAA
TTCAACAGAAGTTATTTTTTATCACATAGTTCATCATAGAAAATCAATAAAAATTAAATAGTTCAACAACAAACAGTTCA
ATACAAATTATATAGTTCAACAAATAAAAACTCATATTTCATCACACGTCGAGCTAGGTGTTGCCCTTGAGCCTCCATAG
GTGCTCCACCAGATCCTGCGGCAGTTGTTGATGCACCTGTGGGTCTCGGATCTCCTGGCGCGTATTGAGGAAGGCAGTCC
AGGTTGTCAGTAGCTGGTGATCAATTTGGGCAAGAAGAGTCTGCCTGTAATATGGTTCAGTTTCAAACACTGGCTCTTCC
TGCTCTCTCTCAATGATCATGTTGTACAAGATGACACATCAAGTCATGATCTCCCACATATGATCTTTCGACCAGGTCTG
AGCGGGGTACCGGACAACAGCAAATCGAGATTGGAGTACACCAAATGCCCGCTCGACATCCTTCCTGCAAGCCTCCTGAA
CCTTCGCAAAGTAGGAGTTCTTGCCTCCTGGCATGGGATTTGAAATAGTCTTCACAAATGTAGACCATGTCGGATAGATG
CCATCTGCTAGGTAGTATCCCCCTTGTTGTAGTGCCGCCCATTGACCTCGAAGTTCACCGGAGGAGAATGACCTTCAACA
AGTTTGGCAAAGACAGGGGAGCACTGCAGCACGTTGATGTCATTGTGAGTTCCTGGCATACCATAGAAGGAGTGCCAAAT
CAAGAGGTCCCGTGTGGCCACTACCTCAAGTACCACACCGCAATCGTCTTTGGCGTCTTTGTACATCCCGTGCCAAGCAA
ACGGACAGTTTTTCCATTTTCAATGCATGCAGTCGATGCTACCAAGCATCCTAGGAAATCCTCTTGCTGCATTCTGTGCT
AGCATCCGAGCAGTGTCTTCAGCATTGTGGTCCAAACACTGCCACTACTGCCATGCAGAACTTGTAGAAACACTCAATGG
TCATGGACTCGGCCATGCGCCCATAGTCGTCGAGTGAATCACCGGGAGCTCCGTATGCAAGCATCCTCATAGTTGTCATG
CACTTCTAGATTGAGGTGAACCCAAGTTTGCGGGTGCAATCCTTCTTGGACTTGAAGTAGCTGTCGAACTCCCGGATGGA
ATTCACAATTCTGAGGAAAAGCTTTTGGCCCATCCGATAACGGCACCGAAATACTTTGTCGCCGTGCAGTGGAACGTCGG
AGAAGTAGTCGGAGTAGAGCATGCAATAGCCTCTCAGTCGATGTCGGTTCTTCGCTTTCAGCCGCCCCGGCGCCGAGCCA
CCTCGCCGCGGCTTTGCATTGCTCGCGAGCAGGCCGGCCAGGGCGGCGAGGACCATGAGATGCTCTTTGTCCTGGACATT
GGCATCGGCTTCCTCCTCCAGCAGCGCCGCGAGCGCCTCGTCCGAGTCCATCGTCGAGCAGATAAATCGTTGAACACCTG
GTGGGCGTGGTGGGCGCACAGCCGCCGGTATCCCGCCCTGCGCGGTCAGAGCGCGGGAAAACTCGCCCAGGAAGGTGGTG
GAGAGGTTGCCGCGGCAAAACCCTTCTTTTTTCCGGCGGGGAATGGCCTATCTAGCGGTGGTGGGCGGTGGGCGGCGCCG
GGATCGGCATGGTGGCAGGAGGGCGTGCGGGGGGTGGGGCGAATCTGGACGTTTGTCTTGAATTTTCGCCTGACAGTGTG
GCCTAGGCGTGGTTTTCCCTTTCGCCGGAGCCCCCGAGCGCCCCCAAGCGTACTGGGTTCGGCCTGGGATCGCCGGACCC
AAAAATGGGTCAAGCCGGCGGATTTCGGCGTCTTGGGGGCGCGACTGGGAGTTTTTTTTGTGCCGGCGTGAAAAAAGTCA
CCCTGGGAGCCTGTTGGGGGCACGGCTGGAGATGCTCTTAGGACTTTGGTGCAAGTGATCAACACTCCTTAA---TAAGC
AC-----------TATATAAATACATCATGCACGTACCTCTTGTTCCAACGACTAACGGTTCTAGACTTCAAGTCATTTG
C-GTGCGTCCGTGCGTGCGCGAGCGACCTGATGCCTTGCTCCATCTTGCGTAGTGTACTACTTGTGGTGGTCACCGCGGT
GGTGATC---GGCACGGCTCGCGGCCGCAGCGGC---------TCCGGCGACCACCTCACCGCCGGCTTCACACGTGTGA
GGCTGACGGAGTCCCAGTTTGTTGTGCAGAAGCCCTACGACGTTCTGCTCGACGCGCGCTACGAGTTCTCCGGCGGCATC
CGCCGGATGTGGGTCTTCTCCACCGACAAGCCCGGCAGCCCCACCTACCCCGGTGGCGCGCGCACCGAGATCAAGATCAA
CGTACGTAGGCGCCCATGC----GGCATCCGAAACCGAACA---AAAATATCCTCTTTTTGCGTCCCATCTCATGCGGCG
GTACGTTGCTTATATGCGGTTTTGCTAATTCTTGTGTTGTGCCATGGTGCATGGCATGCATGCAGGAGGTGTACACGTCG
AGGGTGTGGTAGTTTCGAGGGTGAGGTGTACGTGCCGGCGGGCACATCCGGCGCGTTCATCATACCGATCTTCGGGGCCA
AGCCGGAGCGGCAGGCGACGACGCTGATGCTCCACGTCTACGACGGCAACCTCACCTTCTACCACCGCCAGCAGAGTGTG
CTCGCCCACGACGCCTACGACCGCTGGCTCCGGCTCAACGTCGTCCATGACGTGGGCGCGCGCAACGTCACCGTCTACGT
CGACGGCGCCGAGAGGCTGTGCTCGAGCAGCCACGGCGCGCCGCACGCCGAGCACTACTTCAAGTTCGGGGTGTACAAGC
AATCACACCACAACCCGTCGCACCGCATGGAGTCACGGTGGAGGAACGTCCGGGTCTTCACCAAGCCATGACTCACGCCA
T--GCGTATGCAGCTTGATGATTTGGTTGGTTCCAATTCCAACCATG------GTTTTAAATTTCAGTCGACACCTACCG
AAACTACCGAAGCTCAATATGGTGATTTGATAACCATGATTTAAAATTTCAGTTCCAA-------CCATGTTTTACAATT
TAATATTTCCCTTTGGTGTGTGTTAATTTGGACGTGG----GATGCTGTGATGTGATCGATGGTGATGATTATTTAACCA
TTTTCGAGCAATTCTAATCTTAAATAAATTC-----------------GCCGGTGGAGAC--CTCGATGGAGGTCGGCGG
CAGCGCCACTTTCCTCCCAGCACTTGCAAGT-----------------CCTTCTTTGGCTAATCTTAGATGTCGAGAATA
TCTTTATTGACAGACCAAACTAAATGGCAACATTTTATATTTCATGTTCTTAATTAAAGTAACAAGAATAATTTGACCAA
ACAATGCTAATCCTTACCGTGTGGCATTTGTGATAAGCAATTCAAACAATTAAAAACCCCAATGTTAGTTCTTACACTAA
CCATCTTC-----ATTGATTAAGATTACATGAATACTATGGATGAGCCAATAATGTTACACCTACATATGGGTTTATGAA
ACCTTACGTAAATCCTTCCCACGCTAACTAAACTATCCCCCCCCCCCTGATTTTCAGGGTGGGCCCGTGTCCCCAAATTC
GGCCCAATCCAAACCCACCACATCAGATCGTACGCAACATACGTAAGACTCGTTACGTAAGTGTAGCATCGCTCATGGAT
GAGCCTGCCCAACGAAACTCATGGGA-GGGCTTGTCCAACATTTTTGCCAAGTACTTTCTCAATATGAATGGAATTGTCC
TAGATGGAATAATAGTACATCCCTCAAACCAGCCACAAAACTTCCTCCCTCCTCCCGCATGGTATTTCACTGCAAA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>chr3A_649
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAATACATAT-GTGGCGCTCTAAAAACAATGTCTTGTTT
TTGATTATGTTTGTTTTGAGATAGAGAGGCTTGATTATAACAACGAAGTGCATCCACGTGCATAAGTAATTCCGTTTGTA
TGCATCTAAAACAAAAGAACTGGCTGGCCGCTGAAGAATAAATGACAGTAGATGTTACTATCTTCCCCAATGCAAGTCCC
TTTAGGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------CTTTGGTGCAAGTGATCGACATATATACTCCTTAAAC
AC-----------TGTATAAATACATCATGCACGTAGCACTTGTTCCAACAACCAAGTGTTCTAGACTTCAAGTCATTTG
C-GTGCGTCCGTGCGTGCGCGAGCGACCTGATGGCTTGCTCCATCTTGTGTAGTG---TACTTGTGGTGGTCACCGCGGT
GGTGATCATCGGCACGGCTCGCGCGGGCAGCAGC---------TCCGGCGACCACCTCACCGCCGGCTTCACCCGTGTGA
GCCTGCCGGAGTCCAAGTTCGTTGTGCAGAAGCCCTACAACGTTCCGCTCGACGCGCGCTACGAGTTCGCCGGCGGCGTG
CGCCGGATGTGGGTCTACTCCACCGACAAGCCCGCCAGCTCCACCCACCCCGGCGGCGCGCGCACCGAGATCAAGATCAA
CGTATGTAGGCGCCCATGCATGCGGCATCCGACACCGGGC-------ATATCCTCCTTTTGCGCCCCATCTCATGCTCTC
GCCGGTTGCTTATATTTTAATTCGTG------TGTGTTGTGCCATGGTGCATGGCATGCATGCAGGAAGTGTACACGTCG
GGGGTGTGGCAG-TTCGAGGGCGAGGTGTACGTGCCGGCGGGCACATCCGGCGTGTCCATCATGCAGATCTTCGGGGCCA
AGCCGGAGCGGCAGGCGACGACGCTGATGCTCCACGTCTACGACGGCAACCTCACCTACTACCACCGCCTGCAGACTGTG
CTCGCCCACAACGTCTACGACCGCTGGCTCCGGCTCAACGTCGTCCACGACGTGGGCGCGCGCAACGTCACCGTGTTCGT
CGACGGCGCCGAGAGGCTGCGGTCGAGCAGCCACGGCGGGCCGCACGCCGAGCACTACTTCAAGTTCGGGGTGTACAAGC
AGTCGCACCACCACCCGTCGCACCGCATGGAGTCGCGATGGAGGAACGTCCGAGTCTTCACCAAGCCATGAATAACGCGA
T--GTGTGCGCCGTTTGATGATTTGA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>chr3D_974
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---TGCATCCGTGCGTGCCCGAGTGATTTGATGGCTTGTTCCATCTTGTGCACT---CTGCTTGTGATGGGCACCGCGGT
GGTGATC---GGCATGGCTCA---------CG------------CCGGCGACCCCCTCACCGCCGGCTTCACCCCTGTGA
GGCTGACGGAGTCCCAGTTCGTTGTGCAGAGGCCTTACGACGTCCCGCTCGACGCGCGCTACGAGTTCGCCGGCGGCGTG
CGCCGGATGTGGGCCTACTCCACTGACAAGCCCATGAGCGCCACCCACCATG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ACCTGCGGAGGGTG
CTCGCCGGCGGCGTCTACGACCGGTGGCTCCGGCTCAACGTCGTCCATGACGTGGGGGCGCGCAACGTCACCGTGTTCGT
CGACGGCGCCGAGGTGCTGCGCTCGCGCAGCCACGGTGCGCCCGGCGCACCGCACTACTTCAAGTTCGGGGTGTACAAGC
AGTCGCACCACCACCCGTCGGACCGCATGGAGTCGCGATGGAGGAACGTCCGAGTCTTCACCAAGCATTGAATCACGCGA
T--GGGTCGGCAGTTGGTTGTTTTGATTGGTTCCAAC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S------------S-S------
------------------------------S-------S-------------------S---S-----------------
-------S--S--S---S---------SS---------------S-S--SSS----------S--SSS-SS---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-S----S-S---SS-SSSSSS-SSSSSSSS-SSSSSSS-SSS-----S-SSSS-SSSS-S-S-SSSSSS---S-SSSSSS
SS---------------------------------S----S-------S---------------S-----------S---
-----------------SS--------S----------S-----S-----------------------------------
--S----------S----------------------------------------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------SSSSS
-SSSSSSSSSSSS-------------------------------------------------------------------
-S-----------------S---------S-----------------S--------------------------------
------------S---------------------SSSSSSSSS-------------------------------------
--------------------------------------------------------------------------------
-----S-S------------------------------------------------S-----------S-----------
-----------------S-----------------------SSS--S---------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
-----------------------------------------------------------------------S-S------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
SSS-----------------------S-----S----SSSSSSSS-SSSSSSS------S-SS-S-S-----S------S
------------S-S-S---------------------------------------------------------------
----S--------------------------------------S------------------------------------
-----------------------------------SS------S--S---------------------------------
--------------------------------------------------------------------------------
---------S----S----------------------------------------------------------------S
---------S-S-S--S-S----S---S--------------S----S------S-SS------S--S----------S-
---SSSSSSSSSS-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------S--------------------SSS--------------S---------------
--S----S-------------------S----------S------------------SS--------S--------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_224
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TGCCCAGACCTCCATGAATG----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-----------------------
>reverse_3647
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CATATCCTCCTTTTGCGCCC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>forward_3643
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GGCATCCGACACCGAACATA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>reverse_5276
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------CCTCA
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