>input_sequence_68115
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-----------------------------------------------------------ATGGAAGCAAATCAGCCACAA
GGATTTGGAGTTGAACAGAAGTCAGGACCAGAGCAAACAGATGAGATGCTAGGATCACAGGTTAACCAAAAGTTAACGCA
AATGTGCCTAGACGACGATGTTGTGGAAGCTGGCATTGTTCAAGGAAAGCAAGATGATCCAGAGGCAAGATTGGAGGTTC
ATCAGAAGTTTGCTGAAATGTGCCTAGACACTGCTGTGGGAACTGATGTTAACCAAGAAAAGCAATCTGATCAAGAGGCA
AGATCGGAGGCTGATCAAAAGCCTGCAGAAACTATCAGGCAGTGCACAGTTGTGGAAGCCAATGTTAAGCCAGAAG---A
GCAGCAGGCTGCTGCTAATCCAGGTGTCATTTACCGCTGCAAAAAGTGTCGGAGGATGGTAGCAACACAAGAGTACGTCG
TCACGCACGAGGTAGGCCTAGGAGAGGCAGGCTTCTTAAAGCGCAGAAACGATGCGGATGAGAAGAAGCCTGAATGCAGT
GCCTGCATCTTCGTGGAGCCCATGAAGTGGATGCAGGCTGGTGAGTTCCTCAACTTTAGCTCCGTTTGCTTGTTTCTTAA
CTCCTTTCTCGGTTCAGCGTAT-TTTGTTTGTTTTTTGATGCAAAAACCTGATGTGTTGGTCTTTCCCGTGACGGTTGCA
GTGGAAGAGGGGTACGTTTCGAACAAGCTGTGGTGCATGGGATGCCAGACCCGGCTGGGATCGTTCGACTGGGCAGGCAT
GCAGTGCTGCTGCGGAGCGTGGGTGATCCCGGCTTTCCAGCTGCTCAAAAGCAGGATCGACGAGTCTCACATGTGA----
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>chr2D_1_TraesCS2D01G363400
TTAGCAGTATTGTCAAATGCTGTAGATGGTGAGAGATTTACAGAGATACCACCCAATGCTTGACAGAGGTCATGTTAGAG
AGTTGTTGCCCATTCAGAGCCTTCTGGATATTAGTCACGGGTGGGTGTGTATTGGGGG--TATTTGTTTTGGCTTTTGTT
AGTTGGCACAGGGGATTCAAGCAAGGACTGGGTTGAGTTTGGGATATGTGATAGCCCTCTACAGTCCATGTATATGTCGC
CACTACTAGT----------------------------------------------------------------------
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-----------------------------------------------------------------------------CAA
TATACTATGTCTTGTGTCTGTCATTGTCATATCCACGAACTTTTCTGAGAGATACGTGTAACTTTATTCAAACACCACAA
CCA------------------------TATTGATGAACTTGAATGTGTGTTAAAAAGGAGTTGGCTGAAAGAGTGTTTCT
GGACACATTTCTTAATTGTAGCCACTAGTTCTGTGAGAGATACTACATAAATGTAAAATGTACTCCCTCCGTAAAGAAAT
ATAAAAGCATTCTAAATGCTCTTATATTTCTTTACAGAGGGAGTAATAGGTAAGGAACAATGAAATGATTATTCTCAGTC
AAATCCTAAAACTAAGTTCTTTAATTTAGGAGTTGCTTGCACTACTAGCAATTTTGAGATCCCTATAGAGGGACTGATGA
ACAGCTGAATACATATAGACATCTATGTACACACCTTAATGTACATTAGGCAATCATATTTGTTGATAAAAAAA-TGCAT
TTATAGAAGCTTTTGTCTGTTTTATGTGCAATCTGTGGAGGCA-CCTATATGAGTGTGTCTGTCTACTAGCACTATACAT
GAA---TTATGGTTTGCCTGTTAAAGTTGACTAGAGCTATATGCGACTTTTTATGGCTTGCCTGTTAAATTAGATGGGGA
AACTGAACCCAGTTAGTTCTCAGCACATTTCTGAAGGCTTTAATTTTCAACAGCATGGTAGGCTAATTTTATGTTCTGTG
TGGTTGTAGCCTACCTGCATTT-AACTTGCCATGGCTAACATTATGTAATTTAAAGCAGATGGAAGCAAATCAGCCACAA
GGATTTGGAGTTGAACAGAAGTCAGGACCAGAGCAAACAGATGAGATGCTAGGATCACAGGTTAACCAAAAGTTAACGCA
AATGTGCCTAGACGACGATGTTGTGGAAGCTGGCATTGTTCAAGGAAAGCAAGATGATCCAGAGGCAAGATTGGAGGTTC
ATCAGAAGTTTGCTGAAATGTGCCTAGACACTGCTGTGGGAACTGATGTTAACCAAGAAAAGCAATCTGATCAAGAGGCA
AGATCGGAGGCTGATCAAAAGCCTGCAGAAACTATCAGGCAGTGCACAGTTGTGGAAGCCAATGTTAAGCCAGAAG---A
GCAGCAGGCTGCTGCTAATCCAGGTGTCATTTACCGCTGCAAAAAGTGTCGGAGGATGGTAGCAACACAAGAGTACGTCG
TCACGCACGAGGTAGGCCTAGGAGAGGCAGGCTTCTTAAAGCGCAGAAACGATGCGGATGAGAAGAAGCCTGAATGCAGT
GCCTGCATCTTCGTGGAGCCCATGAAGTGGATGCAGGCTGGTGAGTTCCTCAACTTTAGCTCCGTTTGCTTGTTTCTTAA
CTCCTTTCTCGGTTCAGCGTAT-TTTGTTTGTTTTTTGATGCAAAAACCTGATGTGTTGGTCTTTCCCGTGACGGTTGCA
GTGGAAGAGGGGTACGTTTCGAACAAGCTGTGGTGCATGGGATGCCAGACCCGGCTGGGATCGTTCGACTGGGCAGGCAT
GCAGTGCTGCTGCGGAGCGTGGGTGATCCCGGCTTTCCAGCTGCTCAAAAGCAGGATCGACGAGTCTCACATGTGATTTT
ACTCGGCCAAGTGGCCTTACCATTGCTTGGCGAGTTAGTGGTTAGCGGTGATACTGCAGCAGCATGTGTAGGAACTAGGA
ACTGATACTATCAGATTTGTTTCTCTGTATAAAGTGCGCTTATCTTGTCCACCACATCAGCTTTGTCCAGCGTCTGTTTT
GATTAACGGCTCTTAACCAGTACGTACTTCCTTCGTCTCAAAAAAAGAAGACCTATAAATTTATAAATTTTCTCTTGAGT
CAAATGGTGTAATGTTTGACC--------------------AATTTTGTTGAAAATTTATCGACAACTATGGTACTACCA
ACCTAGTATCATGAAATAAACAACTTATTGCCGGATTAGAGCCTCTAGCAGGGCACTAAACATGGCCCACGTATAGTTTT
CTCGGTCGACGCGCCAAATATTTCACCCGGAGCCCCTCACACAAGTGTACCGAAAAAGGGTTTCCCCC-GCTTTGTATTC
CAAAGCAAACCACCCTTGTGCACATCGCAATGCTGGGGCGAGCAGCACATCAAGCCCGAAAGAAAACGAAGAAGAAACAA
ATGCCAACAGCGGCAACTCGACAAAGCGCGGAAGACCCGCGACCGCTGGGCCCTCCGGAAACACACCACCAC--------
-------------------------------------------------------ACGCTGCTGCCC-GGACGAGTCCTA
GGGTTTCCCCCAGTACGCGGAGGGAGGTGGGGGATGGTTACTACCGACACCCTCCAAGAAGGAATAGTGGCACCCGCCGG
TGTCACCGCATCAGAGCCGGGCGAACCGGCAAGGATTTCTCCCAGACACGAAACCCCACCGCCCAACCGGAACCGACCAG
CCAAACCACCGTCCAACACCATGCGCCATCACGATTGCGCCGCCACCCACGCCGTTTCACTGCGAACACCAACACGAGGC
CAAGAAGACCG--GAGAGAAGAGCCGAGCAACGGGAGCAGCAGCA-CAAGGCCGAGCGGGAGGGAACCACCTCCACCGCC
GTCGTGCCAGAGGCCCACGCCTCCGGCACCGTCGCGATAGCCGT
>chr2A_1
TTAGCAGTATTGTTAAATGCTTTTGATGGTGAGAGATTTACAGGGATACCACCCAATGCTTGACAGAGGTCATGT--GAG
AGTTGTTGCCCATTCAGAGCCTTCTGGATATTAGTTACAGGTGGGTGTGTATT-GGGGGCTATTTGTTTTGTCTTTTGTT
AGTTGGCACAGGGGATTCAAGCAAGGACTGGGTTGAGTTTGGGATATGTGATAGCCCTCTACAGTCCATGTATATGTTGC
CACTACTAGTATTGGCCCTATTTGGTTCAGCTTTTATCGACGGATTCGGCTGCCGCGCAGCAGAATCTAAACCAAAGGGC
GAACCCAGCAGAATCCGATTCCAGAAATCTGCTGCCAAAATCTGAACCAAAAGCGGAAGCAGCCCAGGATGTGCTTTCCA
AAATCTGATTCCGCTGCGGGTCAAAATCTGAAAAAGCTGTATCAGCTGGTTCGCCAAATGACCTACATCCTTTTCACATC
AGATTTTTCACAGCTGTTTTTCCACAGCAGATTTTTCACAGCTGCTTTTAGAAATCCACAGCCGAACCAAACAGGGCCAA
TATACTAGGTCTTGTGTCTGTCATTGTCATATCCATGAACTTTTCTGAGAGATACCTGTAACTTTATTCAAACACCACAA
CCA------------------------TATCAATGAACTTGAATTGTGTTC-AAAAGGAGTTGGCTGAAAGAGTGTTTCT
GGACACATTTCTTAATTGTAGCCACTAGTTCTATGAGAGATACTACATAAATGT---ATGTACTCCCTCTGTAAAGAAAT
ATAAAAGCATTCTAAATGCTCTTATATTTCTTTACAGAGGGAGTAATAGGTAAGGTACAATGAAATGATTATTCTCAGTC
AAATCCTAAAACTAAGTTCTTTAATTTAGGAATTGCTTGCACTACTAGCAATTTTGAGATCCCTATAGAGGGACTGATGA
ACAGCTGAATACATATAGACATCTATTTACACACCATAAAGTACATTAGGCAATCATATTT-------------------
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>chr2B_9
--------ATTGTCAAATGCTGTAGATGGTGAGAGATTTACAGGGATACCACCTAATGCTTGACAGAGGTCATGTTGGAG
AGTTGTTGGCCACTCAGAGCCTTCTGGATAT-AGTTACAGGTGGGTGTGCATC-GGGG--TATCTGTTTTGGCTTTTGTT
AGTTGGCACAGGGGATTCAAGCAAGGACTGAGTTGAGTTTGGGATATGTGATAGCCCTCTACAGTCCATGTATCTGTTGC
CACTACTAGT----------------------------------------------------------------------
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-----------------------------------------------------------------------------CAA
TATATTATGTCTTGTGTCTGCCATTGCCATATCG---------TCTGAGAGATACCTGTAATTTTATTCAAACACCACAA
CCATTACAAATGTACCGCGGAGTTCCATATTGATGAGCTTGAATGTGTGT-------GAGTTGGCTGAAAGAGTGTTTCT
GGACACATTTCTTAATTGTAGCCACTAGTTCTGTGAGTGATATTACATAAATGT---AGAAT------------------
------------------------------------------GTAATAGGTAAGGCACAATGAAATGATTATTCTCAGTC
AAATCCTAATACTAAGTTCTTTAATTTAGGAGTTGCTTGCACTACTAGCAATTTTGAGATCCCTATAGAGGGACTGATGA
ACAGCTGAATACATATAGACATCTATTTACACACCTTAATGTACATTAGGCAATCATATTTGTTGATAAAAAA--TGCAT
TTATAGAAGCTTTTGTCTGTTTTATGTGCAATCTGCGG-GGCA-CCTATATGTGTGTGTCTGTCTACTAGCACTATACAC
GACTTCTTATGGTTTGCCTGTTAAAGCTGACTAGGGCTATATGCGACTTTTCATGGCTTGCCTGTTAAATTAGA-GGGGG
AACTGAACCC----AGTTCTCAGCGCATTTGTGGAGGCTTTAATTTTGAACAGCATGGTAGGCTAATTTTAGGTTCTGTG
TGGTTGTAGCTTGCCTGCATGTAAACTTGTCATGGCTAT-AGTATGTAGTGTAAAGCAGATGGAAGCGAGTCAGCAACAA
GGATTTGGAGTTGAACAGAAGTCAGGACCAGAGCAAACAGATGAGATGCTAGCATCACAGGTTAACCAAAAGTTCACGGA
AATGTGCCTAGACGACACTGCTGTGGAAGCTGGCATTGTTCAAGAAAAGCAAGATAATCCAGAGGCAAGATTGGAGGTTC
ATGAAAAGTTTGCTGAAATGTGCCTAGACACTGCTGTGGGAACTGATATTAACCAAGAAAAGCAATCTGATCAGGAGGCA
AGATCGGAGGCTGATCAAAAGCCTGCAGAAACTATCAGGCAGTGCACAGTTGTGGAAGCCAATGTTAAGCCAGAAG---A
GCAG---GCTGCTGCTAATCCAGGTGTCATTTACCGCTGCAAAAAGTGCCGGAGGATGGTAGCAACACAAGAGTGCGTCG
TCATGCACGAAGTAGGCCTGGGAGAGGCAGGCTTCTTAAAGCGCAGAAACGATGCGGGTGAGAAGAAGCCTGAATGCAGT
GCCTGCATCTTCGTGGAGCCCATGAAGTGGATGCAGGCTGGTTAGTTCCTCGACCTTACC----TTTGTTTGTTTCTTGC
TTCCTTTCTTGGTTCAGCGTAT-TT---------TTTGATGCAAAAACCTGATGTGTTGGTCTATCCCGTGACGTTTGCA
GTGGAAGAGGGGTACGTTTCGAACAAGCTGTGGTGCATGGGATGCAAGACCCGGCTGGGATCGTTCGACTGGGCAGGTAT
GCAGTGCTGCTGCGGAGCGTGGGTGATCCCGGCTTTCCAGCTGCTCAAAAGCAGGATCGACGAGTCTCACATGTGATTTT
ACTCGGCCAAGTGGCCTTGCCGTTGCTTGGCGAGTTAGTGGTTAGCGGTGATACTGCAGCAGCATATGTAGGAACTAGGA
ACTAATACTGTCAGATTTGTTTCTCTGTATAAAGCGCGCTTATCTTGTCCACCACATCAGCTTTGTCCAGCGTCTGTTTT
GATTGACGGTTCTTAACTAGT--GTACTTCCTTTGTCTC-AAAAAAGAAACC---------TATAAAATTTCTGTCAAGT
CAAATGGTGCAATGTTTGACC--------------------AATTTTGTTGAAAATTTATCAACAACTACGGTACTACCA
AGTTAGTATCATGAAATAAACAACCTATCGCTGGATTAGACCCTCTAGCAGGGCACTAAACA------------------
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>chr2A_672
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--------------------------------------------ATTAGGCAATCATATTTGTTGATTAAAAAAATGCAT
GTATAGAAGCTTTTGTCTGTTTTATGTGCAAGCTGCGG-GGGCGCCTATATGTGTGTGTCTGTCTACTAGCACTATATAC
GACTTCTTATGGTTTGCCTGTTAAAGCTGACTAGGGCTATATGCGACTTTTCATGGCTTGCCTGTCAAATTAGA-GGGGG
AACTGAACCCAGTTAGTTCTCAGCACATTTGTGAAGGCTTTAATTTTCAACAGCATGGTAGGCTTATTTTATGTTCTGTG
TGGTTGTAGCCTGCCTGCATGTAAACTTGTCATGGCTAACAGTATGTAATTTAAAGCAGATGGAAGCAAATCAGCCACAA
GGATTTGGAGTTGAACAGAAGTCAGGACCAGAGCAAACTGATGAGATGCTAGGATCACAGGTTAACCAAAAGTTCACGGA
AATGTCCCTAGACGACGCTGCTGTGGAAGCTGGCATTTTTCAAGAAAAGCAAGATGATCCAGAGGCAAGATTGGAGGTTC
ATCAGAAGTTTGCTGAAATGTGCCTAGACACTGCTATGGGAACTGATATTAACCAAGAAAAGCAATCTGATCAAGAGGCA
AGATCGGAGGCTGATCAAAAACCTGCAGAAACTATCAGGCAGTGCACAGTTGTGGAATCCAATGTTAAGCCAGAAGAGCA
GCAG---GCTGCTGCTAATCCAGGTGTCATTTACCGCTGCAAAAAGTGTCGGAGGATGGTAGCAACACAAGAGTACGTCG
TCACGCACGAGGTAGGCCTAGGAGAGGCAGGCTTCTTAAAGCGCAGAAACGATGCGGATGAGAAGAAGCCTGAATGCAGT
GCCTGCATCTTCGTGGAGCCCATGAAGTGGATGCAGGCTGGTGAGTTCCTCAACCTTACC----TTTGTTTGTTTCTTAC
CTCCTTTCTCGGTCCAGCGTATCTT---------TTTGATGCAAAAACCTGATGTGTTGGTCTATCCCGTGACGTTTGCA
GTGGAAGAGGGGTACGTTTCGAACAAGCTGTGGTGCATGGGATGCAAGACCCGGCTGGGATCGTTCGACTGGGCAGGCAT
GCAGTGCTGCTGCGGAGCGTGGGTGATCCCGGCTTTCCAGCTGCTCAAGAGCAGGATCGACGAGTCTCACATGTGATTTT
ACTCGGCCAAGTGGCCTTGCCATTGCTGGGCGAGTTAGTGGTTAGCGGTGATACTGCAGCAGCATATGTAGGAACTAGGA
ACTGATACTGTCAGATTTGTTTCTCTGTATAAAGTGCGCTTATCTTGTCCACCACATCAGCTTTGCCCAGCGTCTGTTTT
GATTAACGGCTCTTAACCAGTACGTACTTCCTTCGTCTC-AAAAAAGAAGACCTATAAATTTATAAATTTTCTCTTAAGT
CAAATGGTATAATGTTTGACCAATTTTGTCGAAAATTGACCAATTTTGTCGAAAATTTATCAACAACTATGGTACTACCA
ACCTAGTATCATGAAATAAACAACTTATTGCCGAATTAGAGCCTCTAGCAGGGCACCAAACATGGCCCACGTATAGTTTT
CTCGGTCGAGGCGCCAAATATTTCACCCGGAGCCCCTCAAACAAGTGTACCGAAAAAGGTTTTCCCGT---TTTGTATTC
CAAAGCAAACCATCATTATACACATCGCAATGCTGGGGCGAGCAACACATCAAGCCCAAAAGAAAACGAAGAAGAAACAA
ATGCCAACAGCGGCAACTCGACAAAGCGCGGAAGAACTGGGACCTCTGCGCCCTCTGGAAACACACCACCATAGCTCGGA
GCTTCGATCAACCGCGTACTAAGCAGCACCTCCAAGAAGGAATGTGACGCTGACGACGCTGCTGCCTTGGACGAGTCCTA
GGGTTTCCCCCAATACGCGGAGGGAGGTGGGGGATGGTTACTACCGACACCCTCCAAGAAGGAATAGTGCCACCCGCCGG
TGTCACCGCATCAGAGCCGGACGAACCGGCAAGGATTTCTCCCACACACCAAACTCCACCGTCCAACCGGAGCCGACCAG
CCAAACCACCGCCCAACACCATGCGCAGTCACGGTTGCGCCGACGCCCATGCCGTCTTACTGCGAACACCAACACGAGGC
CAAGAAGACCG--GAGA--AGAGCCGAGCGACGGGAGCAGCAACACCAAGGCCGAGCGGGAGGGAACCACCTCCACTGCC
ATCGTGCCAGAGGCCCGCGCCTCCGGCACCGTCGCGATAGCCGT
>chr7D_2245
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-----------------------------------------------TACCGAAAAAGGGTTTCCCCCCGCTTTGTATTC
CAAAGAAAACCACCATTGTACACATCGCAATGCTGGGGCGAGCAGCACATCAAGCCCA-AAGAAAAAGAAGAAGAAATAA
ATGCCAACAGCGGCAGCTCAACAAAGCGCTGAAGACCCGCGACCGCTGCGCCCTCC--AAACAAACCACCACAGCCCGAG
GCTCCGATCTACCGCGAACTAAGCAGCACCTCCAAGAAGGGATGCGACGCCAACGACGCTGCTGCCC-GGACAAGTCCTA
GGGTTTCCCCCAGTACGCGGAGGGAGGTGGGGGATAGCTACAACCGACACCCTCCAAGAAGGGATAGTGGCACCCGCCGG
TGTCACCGCATCGGAGCTGGACGAACCGGCAAGGATTTCTCCCGCACTCCAAACCCCACCGTCCAACCGGAGCCGACCAA
CCAAACCACCGCCCAACACCATGCGCCATCACGGTTGCGCCGCCACCAACGCCGTCTCGCTGCGAGCACCACCACGAGGC
CAAGAAGACCGGAGAGA--AGATCCAAGCGACGGGAGCAGCAGCACCAAGGCCAAGCGGGAGGAAACCACCTCCACCGCC
GTCGTGCGAGAGGCCCGGGCCTCCGGCACCGTCACGGTAGCCGT
>SNPs
-------------------------------------------S--------------------------------S---
-----------------------------------S--S--------------S--------------------------
-----------------------------------------------------------------------------S--
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-----------------------------------S-------------------S------------------------
--------------------------------------------------SS----------------------------
------------------------------------------------------SSS------------S----------
-------------------------------------------------------S------------------------
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--------------------------S-----------------------------------------------------
-----------------------------------S--S-------------S--------------------------S
--S-----------------------S-------S----------------S----------------------S----S
------------------------------S-------------------------------------------------
------------S-------S--------S-----------S--------------------------------------
--------------------------------------------------------------------------S---S-
-----------------S--S-----------------------S-----------------------------------
-----------------------------------------------S--------------------------------
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----SSS-------------------------------------------------------------------------
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------------------------------------------------------S---S-SSSS----S----------S
-------------------------SSSSSSSSS-----------------------------S----------S-----
---------------------------------------------S----------------------------------
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------------------S----------------------------------------------S--------------
---------S----------------------------------------------------------------------
---------------------------------------S------------------------------------S---
-------------------------------------------------------------S------------------
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---------S-----------------------------S----------------------------------------
--------------S----S-------------------------------------S----------------------
------------------------------------------------S-------------------------------
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--------------------S-----------------------S----S-----------S---------S--------
-----------S---------------------S---------------------S------------------------
-----------------SS----------S--------------------------------------------------
----------------S---------------------------
>forward_134
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----------------------------------TCACGGGTGGGTGTGTATTG--------------------------
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>reverse_1920
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-------------------------------------------------------------------------------A
CTCCTTTCTCGGTTCAGCG-------------------------------------------------------------
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>forward_1485
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------------------------GGAAGCTGGCATTGTTCAAGG-----------------------------------
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>reverse_2570
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---------CGCGCCAAATATTTCACCCG---------------------------------------------------
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