>input_sequence_68041
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-----CTATAAATCCTCTACTAATTCCGCCACACACTCACACAGCCAAGTGTGAGACACATACT----ACAAAGCAAGTG
AGCTGAGTGAGCTGTGAGCAGCTAGCTAGTGATCGGCGACGATGAGGGCATCCGCCTTCTCGCTGTGCTTGCTGTTGGCC
CTCGTCGCGGCAAATGTTGCTAGCCTCGCCGTCGCTGGGAGGGCGCCGGAGCTGAAACATGAGCCCAGCCTAGAGCCGAA
GCCTACGCCACAGCCTGACCCCAAACCAGACCCGCAGACCGACCCTAAACTCGCGCCGAAACCTGACCCGACACCCAAGC
CCGACCCTAAACTCGCGCCAAAACCTGACCCAAAAC------------CAGACCCA------------------------
------------------------------AAACCGGTGCCGAAACCTGACCCAGCACCCAAGCCCGACCCCAAACCGGC
GCCGAAACCTGACCCAGCACCCAAACCCGACCCCAAACCAGACCCGCAGCCCGACCCTAGACCGGCGCCAAAGCCTGACC
CCAAGCCCACGCCCGACCCAAAGCCTGCCCCGGGCCCCAGCCCGAAGCCGGACCCCAAACCCCAGACGCCGGAACAATCG
TCCTCGCAGCCGAAGCAGCCGCCACGTTCGCCGTCAGGCTACTTCAACTGACGGGAGGGAGGCTCGTCAGCAGCCGCTTG
GTAATGGAGAATTAGCCTGCCTGCATTTGCATGGGTGTTGGTGCTTAAGTTGTCTCCGGTAATGGTTAGTA--ATGTATT
GCATGTGTTCCCTCCGTCTCTGTACGTGTTGTCTCCAGTTTGTTCGTGTGAGCCATCTTTGCGTCAGTGTGTCTCC----
---------CGTGTGATGTACCATGA------------------------------------------------------
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>chr5A_1_TraesCS5A01G083700
CCATAGCTTTCCAACGATATATCAGAAGCCCCATTTGGA---CACCTTTTAGCTAAAGTTCAACCTAGTACTCGGGGAAG
GTCAGGCGCGTTACTT--GGGAAGTTCATGTTGTGATCAGAATATTATTCTAATCCCGTGATCAGAATAGTGTTT-----
-----ATGTATGTGTATATATATA--------TAGTGTTAC-------TATTCATCACCCAGGGTGCAGAATAAGTTATT
CTTCACCCGAGGTAATCTTACGATCATTTCATAATTAAACTACGCTTGGAATTCAAATAGTTACATTTCTATTGATTCAC
TACGTAAAATTTGACATAA-GAAAA-TAAA-AA-TATAGATCATAAGACAAGAAAATTTGCAGTTTATGTGTATTTCAGA
CTATGTTTTTACGTTTATAATTTTACATAACATAAAATATTTTTT-ACGGTAATTATATATTTTCTTACGGTCCCTTTTT
GCGTCGGAAATAAGACAAAACTTACGAAACGTAAAATTACGGTGCATTGATGGTAAAATATAGGAGGGGGGGAGAATAAC
TATTCCTCATTCGGAATGACGAATAGCGA-----TATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATAATGGATGGAGGGGGTAGCATTTTGGCTCGGTTTATGTCTCTAAGATGGATCGAGTAGTCGAGAAGG
AACGCATAGCAAAAGCAGAGACAATCGAAGAAGACGAAGGTGGAGC-GGGGACCGGCTCTTTGCATGCATGCGTACGTGC
CACTTGTTCGTGT-CCGGACGGGGTCCTAGATCTCGCAAAA--TGCCCGCGTACGTGTCCGTCGATCCATGCCGTCTCGT
GGATCCTTTGGCTCTTTTCTGCTGGATGATTTGGCCGGTGCGCGCATGCCATGCAAAGGTGACATGAACAAAAGCTGAGA
GATGTCACTGTAGCTGGTCACCGTGCCGGTCACGGGCTCGC-AAAGGCAATGGACACGCGTCCGGTGTTGGCACGCTCGC
CGGGCCTATAAATCCTCTACTAATTCCGCCACACACTCACACAGCCAAGTGTGAGACACATACT----ACAAAGCAAGTG
AGCTGAGTGAGCTGTGAGCAGCTAGCTAGTGATCGGCGACGATGAGGGCATCCGCCTTCTCGCTGTGCTTGCTGTTGGCC
CTCGTCGCGGCAAATGTTGCTAGCCTCGCCGTCGCTGGGAGGGCGCCGGAGCTGAAACATGAGCCCAGCCTAGAGCCGAA
GCCTACGCCACAGCCTGACCCCAAACCAGACCCGCAGACCGACCCTAAACTCGCGCCGAAACCTGACCCGACACCCAAGC
CCGACCCTAAACTCGCGCCAAAACCTGACCCAAAAC------------CAGACCCA------------------------
------------------------------AAACCGGTGCCGAAACCTGACCCAGCACCCAAGCCCGACCCCAAACCGGC
GCCGAAACCTGACCCAGCACCCAAACCCGACCCCAAACCAGACCCGCAGCCCGACCCTAGACCGGCGCCAAAGCCTGACC
CCAAGCCCACGCCCGACCCAAAGCCTGCCCCGGGCCCCAGCCCGAAGCCGGACCCCAAACCCCAGACGCCGGAACAATCG
TCCTCGCAGCCGAAGCAGCCGCCACGTTCGCCGTCAGGCTACTTCAACTGACGGGAGGGAGGCTCGTCAGCAGCCGCTTG
GTAATGGAGAATTAGCCTGCCTGCATTTGCATGGGTGTTGGTGCTTAAGTTGTCTCCGGTAATGGTTAGTA--ATGTATT
GCATGTGTTCCCTCCGTCTCTGTACGTGTTGTCTCCAGTTTGTTCGTGTGAGCCATCTTTGCGTCAGTGTGTCTCC----
---------CGTGTGATGTACCATGAATAAACAGAGGAACATGTATCC--------------------------------
---CACTTGATTTTCTGGGTGTTGCTCTCATTCCTTCTCTAGTACCACTCCTTTAATTTCATCTCTGTTGCAATGCTATT
GTGTTCCTTCAACTATGCGTATTGCGTAGTGTTCCATAATATTTGTAGCTAC-------TGGGAAATGGAAAGGCAGGGC
ACTTGACAAACATCAAATTTCAGAACTTAATTCCTCAAACG-AAAAGGAAAAACAGAACTT-ACCAACAGTTTCAGTTAG
AACTT--GGGCCTGTTTGCTTGGGCCGATATCGGGTCAGTCAGATTATTCTGCAGGTTCCCCGCAAAAAAGG--AAGACT
ATTTTGCAGGTGGATCATGGCCCATATGGAAAGACAGAGAAAGATATAGGTTACCCCAACACAAAATATCATCACTTGTT
TGAATGAAATGTTGCCTCTTATATAAATTATAATTATAATGGAGTATGTGGTTCCTGTAACAAGACACGGTCATGGGCAA
TAACAGGGGATTGAAAAGTGGCAGGAAACGAAATGCAAGGCCGACTCTCACTTCCCACATTTTGCCTGCAACCTCTTCAC
TTCAGACCTCCAGCAAACAATGTCTGACATGAATAGCATGATGTGCACGTTGCCATGGCGTCGCGTCGTGATGGATGATG
ATGCTCTTCCTTCTCAGTTTCATATCACAGGTCAATACACCAGTGTGGTTGTACATGCTGTTGGTCACTAACCATGTGGT
GACGACGACACCGTCTGCACACCGAAATAGGATTTGCCTCATGCTCTGATGCTTGATGGCTTCTCGACAACAAGGGTAAG
TAACAGGAACAAGCCAAAGGAGATGACGAGTGATGTGGCCATCAAGATAAGCATTGCTTGTAGTGTGATGCTTGGGCTCA
AGAAGAAGATGACTGCGATGGCACCTGATTGCCAAACCTTCAACTGTGCAAAAGCTGCTTCCTGCATTTGTCATTTTTCA
AGACAAGCTTAGTATTTATTTAAGATAACTTAGT
>chr2A_1
CCATAGCTTTCCAACGTTATATCGCAAGCCCCATTTGGA---CACGTTTTAGCTGAAGTTCAACCTAGTACTTAGAGAAG
GTCAGGCGCTTTACTC--GGGAAGTTCATGTTGTGATCAGAATATTATTCTGATCCCGTGATCAGAATAGTGTTT-----
-----ATGTATATATATATATATATATATATGTAGTGTTAC-------TATTCATCACCCAGGGTGCAGAATTGGTTATT
CTTCACCCGAGGTAATCTTATGATCATTTCATAATTAAATTACGTTTCGAATTCAAATAGTTACATTCTTATTGATTCAC
TACGTAAAATTTGACATAA-GAAAAATAAA-AA-CATAGGTCATAAGACAAGAAAATTTGCAGTTTATGTGTATTTTAGA
CTATGTTTTTACGTTTATAATTTTACATAATATAAAATATTTTTT-ACGGCGATTATATATTTTCTTACGGTCCCTTTTT
GCGTCAGAAATAAGACAAAACTTATTGAACGTAAAATTACGGTGCATTGATGGTAAAATAGAGGTGGGTGA-AGAATAAC
TATTCCTCACCCAGGATGACGAATAGCG----------------------------------------------------
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>chr3A_1
CCATAGCTTTACAACGGTATATGGCAAGCTCCATTTGGG---CAATG-TTGGCGGAAGTTCAACCTAGCACTCGGGGAAG
TTCAACGTACTACTGTCGGGGCAGGTCAGGTTGTGATCAGAATATTATTCTCATCCCGTGCTCAGAATAGTGTTT-----
-----ATATATATATATATATA------------GTTTTAC-------TATTCATCACCCAGGGTGTAGAATAAGTTATT
CTTCACCCGAAGTAATTTTACAATCATTTCATAATTAAATTACGTTTCAAATTCAAATAGTTACATTCCTATTGATTCAC
TACGTAAAATTTGACATAA-AAAAA-TAAAAAA-TATAGGTCATAAGACAAGAAAATTTGCAGTTTATGTGTATTTTAGA
CTATGTTTTTACGTTTGTAATTTTACATAATATGAAATATTTTTT-ACGGCGGTTATATATTTTCTTACGATCCCTTTTT
GCGTCGGAAATAAGAAAAAACTTACGGAACATAAAATTACGGTGCATTGATGGTAAAATAAAACGGGGTGA-AGAATAAC
TATTCCTCACCCAGGGTGACGAATAGCGTGACCCTATATATATATATATATACATATATACATATATAT-----------
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>chr5A_3
--ATAGCTATCCAACGGTATATCGCAAGCCCCATTTGGA---CACCTTTTAGCTGAAATTCAACCTATTACTCGGGGAAG
GTGAGGCGCGTTACTC--GGGAAGTTCATGTTGTGATCAGAATATTATTCTGATCCCGTGATCAAAATAGTGTTT-----
-----GTATATATATA-----A------------GTGTTAC-------TATTCATCAACCAGGGTGCAGAATAAGTTATT
TTTCACCCGAGGTAATCTTACGATCATTTTATAATCAAATTACATTTTGAATTCAAATAGTTACATTCCTATTGATTCAC
TACGTAAAATTTGACATAA-AAAAT---AAAAA-TATAGGTCATAAGACAAGAAAATTTGCAGTTTATGTGTATTTTACA
CTATGTTTTTACGTTTGTAATTTTACATAACATAAAATATTTTTT-ACGGTGATTATATATTTTCTTACGGTCCCTTTTT
GCGTCAGAAATAAGACAAAACTTACATAACGTAAAATTACGATGCATTGATGGTAAAGTAGAGGAGGG------------
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>chr7A_3
--ATAGCTATCCAACAGTATATCACAAGCCCCATTTGGA---C---TTTTAGCTGAAGTTCAACCTAGTACTCGGGGAAG
GTCAGACGCGTTACTC--AGGAAGTTCATGTTGTGATCAGAATATTATTCTGATCCCGTGATCAGAATAGTATTTCTACA
GAATAGTGTTTATATATATATA------------GTGTTAC-------TATTCATCACCCAGGGTGCAGAATAAGTTATT
CTTCACCCGACGTAATCTTACAATCATTTCATAATTAAATTACGTTTGGAATTTAAATAGTTACATTCCTATTGATTCAC
TACGTAAAATTTGACATAAGAAAAT---AAAAA-TATAGGTCATAAGACAAGAAAATTTGCAGTTTATGTGTATTTTAGA
CTATGTTTTTACGCTTGTAATCTTACATAACATAAAATATTTTTT-ACGGCGATTATATATTTTCTTACGGTGTCTTTTT
GCGTCGGAAATAAGACAAAACTTACGGAACGTAAAATTATGGTGCATTGTTGGTAAAATAGAAGGGGGTGA-AGAATAAC
TATTCCTCACCCAGGGTGACGAATAGCGCGACCCTATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATA------------------------------------------------------------------
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>chr2A_3
--ATAGCTTTCCAATGGTATATCGCAAGCCCCATTTGGGCACC---TTTTAGCTGAAGTTCAACCTCGTACTCGGGGAAG
GTCAGGCGCGGTACTC--GGGAAGTTCATGTTGTGATCAGAATATTATTCTGATCCCGTGATTAGAATAGTATAT-----
-----ATATATATAT--ATATA------------GTGTTAC-------CATTCATCACCCAGGGTGCAGAATAAGTTATT
CTTCACTCGAGGTAATCTTACGATCATTTCATAATTAAATTATGTTTTAAATTCAAATAGTTACATTCCTATTGATTCAC
TACGTAAAATTTGACATAAGAAAAT---AAAAA-TATAGGTCATAAGACAATAAAATTTGCAGTTTATGTGTATTTTAGA
CTATGTTTTTACGTTTGTAATTTTACATAACATAAAATA-TTTTT-ACGGTGATTATATATTTTCTTACGGTCCCTTTTT
GCGTCGGAAATAAGACAAAACTTACGGAAAGTAAAATTATGGTGCATTGATGGTAAAATAGAGGGGG-TGA-AGAATAAC
TATTCCTCACCCAGAGTGACGAATAGCGTGACCCTATATATATATA----------------------------------
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>chr2A_10
---------TCCAACGGTATATCGCAAGTCCCATTTGGACACC---TTTTAGCTGAAGTTCAACCTAGTACTCGGAGAAG
GTCAGGCGCGTTACTC--GGAAAGTTCATGTTGTGATCAGAATATTATTCTGGTCCCGTGATCAGAATAATGTTT-----
-----ATGTGTGTGTGTC--------------TATTTATAC-------TATTCATCACCCAGGGTGTAAAATAAGTCATT
CTTCATCCGAGGTAATTTTACGATCATTTCATAATTAAATTATGTTTGGAATTCAAATAATTACATTCCTATTGATTCAC
TATGTAAAATTTGACAAAAGAAAAT---AAAAA-TATAGGTCATAAGACGAGAAAATTTACAGTTTAGGTGTATTTTACA
CT--GTTTTTACGCTTGTAATTTTACATAACATAAAATA-TTTTTTACTACAATTATATATTTTCTTACGGTCTCTTTTT
ACGTCGAAAATAAAACAAAATTTACGGAACGTAAAATTACACTGCATTAATGGTAAAATAGAGGGGGGTGA-AGAA-AAC
TATTCCTCGAGCAGGATGACGAATAGAGA---------------------------------------------------
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>chr1A_71
-------------------------------------------------------------------------GGGGAAA
TTCAGACGCGTTACTC--AGGCAGTTCAGGTTGTGATCAGAATATTATTCTGATCCCGTGATCAGAATAGTGTTT-----
-----ATATATATATATATATATA--------TATATATAC-------TATTCATCACTCGGGGTGTAGAATAAGTTATT
CTTCATCCGAAGTAATCTTACAATCATTTCATAATTAAATTACGTTTGGACTTCAAACAGTAACATTTCTATTGGTTCAC
TACGTAAAATTTGACATAAGAAAAT---AAAAAATATAGGTCATAAGACAAGAAAATTTGCAGTTTGTGTTTATTTTAGA
CTATGTTTTTATGTTTGTAATTTTACATAACATAAATTA-TTTTTTACGGAGATTACATATTTTCTTACGGTCCCTTTTC
CCATCGGAAATAAGACAAAACTTACGGAACGTAAAATTGCGGTGCATTGATGGTAAAATAGAGGGGGGTGA-AGAATAAC
TATTCCTCACCTAGGGTGACGAATAGCGCGACCCTATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATA------------------------------------------------------------------
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>chrUn_74
----------------------------------------------------------------------------GAAG
TTCAGGCGCGTTACTC--AGGCAGTTCAGGTTGTGATCAGAATATTATTCTGATCCCGTGATCAGAATAATGTTT-----
-----ATATATATACATATATATA--------TATATATATATATATATATTCATCACCTAGGGTGCAAAATAAGTTATT
CTTCACCCGAGGTAATCTTACGATCATTTCATAATTAAATTACATTTGGAATTCAAATAGTTACATTTCTATTGATTCAC
TACATAAAATTTGACATAAGAAAAT---AAAAA-TATAGGTCATAAGACAAGAATATTTGTAGTTTATGTGTATTTTATA
CTATATTTTTACGTCTGTAACTTTACATAACATAAAATA-TTTTTTATGACGATTATATATTTTCTTACGGTCTCTTTTT
ATGTCGGAAATAAGAAAAAACTGACGAAGCGTAAAATTATGGTGCATTGATGGTAAAATAGAGGGGA-TGA-AGAATAAT
TATTCCTCACCCAGGGTGACGAATAGTCAATCCCTATATATATATATATATATATATATATATATATATATATATATGTA
TGTATGTAT-----------------------------------------------------------------------
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>chr5B_649
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------------------------------------------------TGTCTCTCCGACGGATCGAGTAATCGAGAAGG
AGCGCGTAGCAAAAGCAGAGACAATGGAAGAAGACGAAGGTGGAGCTGGGGACCGGCTCTTTGCATGCATGCGTACGTGC
CACTTGTTCGTGT-CCGGGCGGGGTCCTAGATCTCGCAAAAATTGCCCGCGTACGTGTCCGTCGATCCATGCCGTCTCGT
GGATCCTTTGGCTCTTTTCTGCTGGATGATTTGGCCGGTGCGCGCATGCCATGCAAAGGTGACATGAACAAAAGCTGAGA
GATGTCACTGTAGCTGGTCACCGTGCCGGTCACGGGCTCGC-AAAGGCGATGGACACGCGTCCGGCGTCGGCTCGCTCGT
CGGGCCTATAAATCCTCTACTACGTCTGCCGCACACTCACACAGCCAAGTGTGATTCCGGTGACACACACAAGGAGAGTG
ACCTGAGTGAGCAGCT---AGCTAGCCAGTGAGCGGCGACGATGAGGGCAACTGCCTTCTCGCTGTGCTTGCTCTTGGCC
CTCGTCGCGGCAAATGTTGCAAGCCTCGCCGTCGCTGGGAGGGTGCCGGGGCTGAAGCATGAGCCCAGCCTAGAGCCCAA
GCCTACGCCACAGCCTGACCCCAAACCAGACCCGCAGACCGACCCTAAACTGGCGCCGAAACCTGACCCGACTCCCAAGC
CCGACCCTAAACTAGCGCCAAAACCTGAACCAAAAC------------CAGACCCACAGCCCGACCCAAAACCGGTGCCA
AAACCTGACCCAACACCCAAGCCCGACCCTAAACCGGCGCCGAAACCTGACCCAACACCCAAGCCCGACCCTAAACCGGC
GCCGAAACCTGACCCAGCACCCAAGCCCGACCCCAAACCAGACCCGCAGCCCGACCCTAAACCGGGGCCGAAGCCTGACC
CCAAGCCCACGCCCGACCCAAAGCCTGCCCCGGGCCCCAGCCCGAAGCCGGATCCCAAGCCCCAGCCGCCGGAACAGTCG
TCGTCGCAGCCAAAGCAGCCGCCACGTTCGCCGTCAGGCTTCTTCAACTGACGGGAGGGAGGCTCGTCAGCAGCCGCTTG
GTAATGGAGAATTAGCCTGCCTGCATTTGCATGGATGTTGGTGCTTAATTTGTCTCCGGTGATGGTTAGTAGTATGTGTT
GCATGTGTTCCCCCCGTCTCTGCACGTACTGTCCCCAGTTTGTTCGTGTGAGCCATCTTCGCGTCAGTGTATCTCC----
---------CGTGTGATGTACCATGAATAAACAGAGGAACATGGATCATGCATGTATCTCAACGTACATTTGTTTCAGTA
CTTCACTTGATTTTCTGGTTGTTGCTCTCATTCCTTCTCTAGTACCACTCCTTTAATTTCATCTATGTTGCAGTGTTATT
GTGTTCCTTCAACTATGCGTATTGTGTAGTGTTCCATAATATTTGTGGCTAC-------CGGGAAATGGAAAGGCAGGGC
ACT-------TATCAAATTTCAGAACTTAATTCCTCAAACGGAAAAGAAAAAACAGAACTTAACCCACAGTTTCAGTTAG
AACTAAGGGGCCTGTTTGGTTGGGACGATATCGGGTCAGTCAGATTATTTTGCAGGTTCCCCGCAAAAAAAAAAAAGATT
ATTTTGCAGGTGGATCATGACCCATATGGAAAGGCAGAGAAAGATATAGGTTATCCCAACCCAAAATATCATCGCTTGTT
TGAATGAAATGTTGCCTCTTATATAAATTATAATTATAATGGAGTATGTGATTCCTGTAACAAGACACAGTCATTGGCAA
TAACAGGAGACTGAAAAGTGGCAGGAAATCGGC---------------CACTTCCCACATTTTGCCTGCAACCTCTTCAC
TTCAGACCTCCAGCAAACAATGTCTGACATGAATAGCATGATGTGCATGTTGCCATGGCGTCGCGTCGTGATGGATGATG
ATGCTCTTCCTTCTCAGTTTCATATCACAGGTCAATACACCAGTGTGGTTGTACATGCTGTTGGTCACTAACCATGTGGT
GACGACGACACCGTCTGCACACCGAAATAGGATTTGCCTCACGCTCTGATGCTTGATGGCTTCTCGACAACAAGGGTAAG
TAACAGGAACAAGCCAAAGGAGATGACGAGTGACGTGGCCATCAAGATAAGCATTGCTTGTAGTGTGATGCTTGGGCTCA
AGAAGAAGATGACTGCGATGGCACCTGATTGCCAAACCTTCAACTGTGCAAAAGCTGCTTCCTGCATTTGTCATTTTTCA
ACACAAGCTTAGTATTCATTTAAGATAACTTAGT
>chr5D_651
TCTCTGG-------------------------------------------------------------------------
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---------------------------------------------------------GATGGATCGAGTAGTCGATAAGG
AACGCGTAGCAAAAGCAGAG---------GAAGACGAAGGTGGAGC-GGGGACCGGCTCTTTGCATGCATGCGTACGTGC
CACTTGTTTGTGTCCCCGGCGGGGTCCTAGATATCGCAAAA--TGCCCGCGTACGTGTCCGTCGATCCATGCCGTCTCGT
GGATCCTTTGGCTCTTTTCTGCTGGATGATTTGGCCGGTGCGCGCATGCCATGCAAAGGTGACATGAACAAAAGCTGAGG
GATGTCACTGTAGCTGGTCACCGTGCCGGTCACGGGCTCGCAAAAGGCGATGGACACGCGTCCGGCGTCGGCTCGCTCGC
CGGGCCTATAAATCCTCTACTCT-TCTGCCACACACTCACACAGCCAAGTGTGAGGCACATACT----ACAAAGCAAGTG
AGCTGAGTGAGCTGTGAGCAGCTAGCTAGTGAGCGGCGACGATGAGGGTACCCGCCTTCTCGCTGTGCTTGCTCTTGGCC
CTCGTCGCGGCAAATGTTGCTAGCCTCGCCGTCGCTGGGAGGGCGCCGGAGCTGAAACATGAGCCCAGCCTAGAGCCGAA
GCCTACGCCACAGCCTGACCCCAAACCAGACCCGCAGACCGACCCTAAACTCGCGCC------------GACACCTAAGC
CCGACCCTAAACTCGCGCCAAAACCTGACCCGAAACCAGACCCGCAGCCAGACCCA------------------------
------------------------------AAACCGGCGCCAAAACCTGACCCAACACCCAAGCCCGACCCTAAACCGGC
GCCAAAACCTGACCCGACGCCCAAGCCCGACCCCAAACCAGACCCGCAGCCCGACCCTAAACCGGGGCCAAAGCCTGATC
CCAAGCCCACGCCCGACCCAAAGCCTGCCCCGGGCCCCAGCCCGAAGCCGGACCCGAAACCCCAGCCGCCGGAACAGTCG
TCCTCGCAGCCGAAGCAGCCGCCACGTTCGCCGTCAGGCTACTTCAACTGACGGGAGGGAGGCTCGTCAGCAGCCGCTTG
GTAATGGAGAACTAGCCTGCCTGCATTTGCATGGGTGTTGGTGCTTAATTTGTCTCCGGTGATGGTTACTA--ATGTATT
GCATGTGTTGCCTCCGTCTCTGTACGTGTTGTCTCCAGATTGTTCGTGTGAGCCATCTT-GCCTCAGTGTATCTCCCGTG
TGATCAGTGCGTGTGATGTACCATGAATAAACAGAGGAACATGCATCGTGCATGTATCTGAACGTACATTTGCTTCAGTA
CTTCACTTGATTTTCTGGTTGTTGCTCTCATTCCTAATCTAACACCACTCCTTTAGTTTCATCTGTGTTGCAATGTTATT
ATGTTCCTTCAACTATGCGTATTGTGTAGTGTTCCATAATATTTGTGGCTACTGCCTACTGGGAAATGGAAAGGCAGGAC
ACTTGACAAATATCAAATTTCAGAACTTCATTCCTCAAACG-AACA-AAAAAACAGAACTTAACCTGCAGTTTCAGTTAG
AACTT--GGGCCTGTTTAGTTGGGCCGATATCGGGTCAGTG----------------------------------AGATT
ATTTTGCAGGTGGATCGTGACCCATATGAAAAGGCAGAGAAAGATATAGGTTACCCGAACACAAAATATCATCACTTGTT
TGAATGAAATGTTGCCTCTT-TATAAATTATAATTATAATGGAGTATGTGATTCCTGTGACAAGACACAGTCATAGGCAA
TAACAGGAGATTGAAAAGTGGCAGGAAACCAAATGCAAGGCCGACTCTCACTTCCCACATTTTGCCTGCAACCTCTTCAC
TTCAGACCTCCAGCAAACAATGTCTGCCATGAATAGCATGATGTGCACGTTGCCATGGCGTCGCGTCGTGATGGATGATG
ATGCTCTTCCTTCTCAGTTTCATATCACTGGTCAATACAACAGTGTGGTTGTACATGCTGTTGGTCGCTAACCATGTGGT
GACGACGACACTGTCTGCACACCGAAATAGGATTTGCCTCACGCTCTGATGCTTGATGGCTTCTCGACAACAAGGGTAAG
TAACAGGAACAAGCCAAAGGAGACGACGAGTGACGCGGCCATCAAGATAAGCATTGCTTGTAGTGTGATGCTTGGGCTCA
AGAAGAAGATGACTGCAATGGCACCTGATTGCCAAACCTTCAACTGTGCAAAAGCTGCTTCCTGCATTTGTCATTTTTCA
AGACAAGCTTAGTGTTCATTTAAGATAACTTAGT
>SNPs
----------------S-------S-----------------------------S-------------------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
---------------------------------------S----S-----------------------------------
---------------------------------------S------------------------------------S---
--------------------------------------------------------------------------------
------------------------------------------------------------S-------S-SS--------
---------SS-S-------------------------------------------------------------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS-----------------------
-----S-------------------S------------------------------------------------------
------------------S-------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S----------------S--S---S-------
----------------------SS--S----------------------------S------------------------
--------------------------------S-----------------S----------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------S----------------S----------------S--------
------------------------S----------------------------------S-----S--------------
-----------------------------------------------------------------S----------S---
--------------------------------------------------------------------------------
------------------------------------------------S-----------S-------------------
-----------------------------------------------------------S----------S---------
-------------------------------------------S---S--------------------------------
------------------S---------------------------------------------S----------S----
------------------------S---------------------S---------------------------------
----------S------------------------------------S-----------------S--------------
------------------S------------------------------S--------------------SS------S-
-------------------S-------------S----------------------------------------------
--------------------------------------------------S-----------------S-----S-----
-------S---------------------S--------------------------------------------------
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-----------------------------------------S--------------------------------------
---------------------------------S----------------------------------------------
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----------------S-----------------
>forward_682
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----------------------AGGGGGTAGCATTTTGGCTC--------------------------------------
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>reverse_2762
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-----------------------------------------TGCTCTGATGCTTGATGGCT-------------------
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----------------------------------
