>input_sequence_68009
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---------------------------------------------------------------------------ATGGC
TGGGCGTGGACTTTTAGCTGCAGGTTTGGTC---CTCCTCGCCGCCGTCGCCCCGGCCTACGCCGCGGACTACACCGTCG
GCGACTCGTCGGGCTGGGCTAGCGGCGTGGACTACAGCACCTGGGCAAGCGACAAAACCTTCACCGTCGGTGACACACTC
GGTACGTGGTGCAGTACTAGGATCATTGCTAGTATCAACGGTGCTCTTGGTGATACTGGA---CCTTAAGTAGAGCACAG
TGCTACCAGCTTGGCAAAAGGGTTCATGTACACGCCAGCGCATGCATGACTTGTTCGCCGGTGCACTGTAGTAGTAGCAG
CAGCAGCAGCTAGCAGTACGGCGCTATTGTTTAGGCCGACCTGATTGATTT-CCATGTGTGCGTGCAGTGTTCCAGTACG
GCGCGTCGCACAACGTGGCGGAGGTGGGGTCGTCGGACTACAGCGCCTGCTCTGCCACCAACTCCATCCAGTCGTTCAGC
GACCAGGACACCAAGATCACGCTCACCAAGCCCGGCACGCGCTACTTCATCTGCGGCGTCAGCGGCCACTGCTCCGGCGG
CATGAAGCTCGCCGTCAAGGTCGCCCCCGCGGCCACCACCACGCCCACCCCGTCCACCTCGCCAGAC-------------
--------ACGCCTTCGGAGACGCCCTCCACGCCTTCGGAGACGCCCTCCACGTCCACGACCCCGGCCGGGGCGACAACG
GCGCCTTCCTCCTCCAAATCAGCGGACAGCGTCGGCGGGGCCAGCGGCGTCGAGGCCCGCTCCGTGATGGGCTCTCTGGT
TGGAGCTGCAGGCCTTGTCGGCCTCGCCCTGATGGGCTAG----------------------------------------
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>chr6B_1_TraesCS6B01G282000
ATTACTTTAAGATACACGGAATTGGAAAGCTAGATTACACGAACAAGCAAGAACAAGGGACTGCTGGGCGTTGTGCCGTT
TGAGCCGTGATCCATCTGGATCAGTTCACCGATCGATCGAAGCATCAGGTGATATAGTGTGTTGCTGCGGGCTGGGCCAA
GCCCGCCACCCATGGCCCACGTCCAGCCCAGTTGTAATTCTGCAAGGCTGCTGACAACGATGCCTACCACCTCACCTCAC
CTCACCTC--ACCTCACCTAAAGCTAATCAATCATCGGAGGACGAAGATCAAGGCCAATAGACG-AATGCACATGCATGA
ATTAGAGTAATTGGTTTGTTCAACGGTTCAACCAACATTTGCCACCTAGCTGTCTTCTCCTTGTACTTTCTTTGACCTCT
TTCAGCTACTGAAGGAGCTTTCTTTCCAAATTATGCACATTTCCTACAAACTGTCTATTTGTTATGTCATCTGTTTTGCA
TTCCTTGATGTTCTGTTATCAAATTATTACACG------------TTAGACAGTTCTATTAAAAATGATGGTAC------
-----------------------------------------------------------------------------TAG
TAGCAAAGAAAATTTACACTGCTAATTTGTAGTTGCTGATATTTACGCATTAATTATTTAACTTGTACCAATCTGTAACA
TAAAATTAGCTGGTCAATATGAGT--------GGTGAAACC--AACATAGTGGCTGTAACGACTGATGAATATTGCTTTC
TTTAGCGCTAACGTATTTGATGTGATGGTGTGATCAACTAAACCCCATCGGTATCAGTGTAGCCCGCTTGGCACTAGTGA
TTTGTTCAAGGAATCGGGGTCGGGGGACGGTAGAGTTGTTGACGAACACAACTAACCCAACTGCACCCGAACAAACCAAA
CCAAATCGCGTTAGCCAGTATACTGACTGCACCGCTTCGCTGAGCCTATATAGC-AGTAACCGCGGGTCCATCACCTGTC
ATCCTTGTACTAGCATTCCA------CAGCAAAGTCTCCAAGAATTCAAAGCCTCCAAGACCTTAACTTGCTATCATGGC
TGGGCGTGGACTTTTAGCTGCAGGTTTGGTC---CTCCTCGCCGCCGTCGCCCCGGCCTACGCCGCGGACTACACCGTCG
GCGACTCGTCGGGCTGGGCTAGCGGCGTGGACTACAGCACCTGGGCAAGCGACAAAACCTTCACCGTCGGTGACACACTC
GGTACGTGGTGCAGTACTAGGATCATTGCTAGTATCAACGGTGCTCTTGGTGATACTGGA---CCTTAAGTAGAGCACAG
TGCTACCAGCTTGGCAAAAGGGTTCATGTACACGCCAGCGCATGCATGACTTGTTCGCCGGTGCACTGTAGTAGTAGCAG
CAGCAGCAGCTAGCAGTACGGCGCTATTGTTTAGGCCGACCTGATTGATTT-CCATGTGTGCGTGCAGTGTTCCAGTACG
GCGCGTCGCACAACGTGGCGGAGGTGGGGTCGTCGGACTACAGCGCCTGCTCTGCCACCAACTCCATCCAGTCGTTCAGC
GACCAGGACACCAAGATCACGCTCACCAAGCCCGGCACGCGCTACTTCATCTGCGGCGTCAGCGGCCACTGCTCCGGCGG
CATGAAGCTCGCCGTCAAGGTCGCCCCCGCGGCCACCACCACGCCCACCCCGTCCACCTCGCCAGAC-------------
--------ACGCCTTCGGAGACGCCCTCCACGCCTTCGGAGACGCCCTCCACGTCCACGACCCCGGCCGGGGCGACAACG
GCGCCTTCCTCCTCCAAATCAGCGGACAGCGTCGGCGGGGCCAGCGGCGTCGAGGCCCGCTCCGTGATGGGCTCTCTGGT
TGGAGCTGCAGGCCTTGTCGGCCTCGCCCTGATGGGCTAGGCAAGAGGCAGTGCTTTGTTTCCGTTCTCCGAATTGTTCA
GTTCACGTTTTCTTCTTCCCTTGCCTCAAAAAAAAAAAAAAAACGTTTTCTTCTTCCCGAGTTGCACACTGCGTGCCTCC
CCGTGGCTCCTCTTTATCTGGGGCCTTTTCATTTGTGCTCTATTCTGTTGTGTGGTTAGATCCTCCCATTCGATCGGGAC
TCGTGCTTGTATGATCACTTTGAAATATGGACTCTCCATGTTGGTG--CTGTGACGTGTCTCGCCAAATCTTGTTATCTT
TTCTTTTTTTTGAGATAGGCCAAATCGTGTTATCAGATGTAGTACGAGTGCATGCTGGCGTGGGGATCCGACACTCCACG
TGATTAACTAGCCAGTACTA----------GTAATGTACACGTGTATTAAACATGAAAGTTTAGATAATCATCGACATAC
CATATTAT-AAAAAGTAAACTTACAAGTGTG----GAGTCATATATGTGCATAATGTAGATGTGGGTTTAATTCTCGTAG
TTCACCCCCTTGAAAATCTCACTATAGGTGTTTTGAAAACTGCATAGTACTCCCTTCGTTCACAAATATAAGATGCCTTG
GATTTTAATATGGACCATATACGAACTAAAGTGAGTGAAAAACACCTCAAAACGTGTCTATATACATTCAATTCAAAAAA
AGTTGAAACATCTTATATTTATGAACGTAGGTAGTATAATAGTGTACGAAACAAATCACTAGTAGAAAACGGGCCTTTAG
TCCCGATTCTGGAACTGGGACAAAACAAACGGGACTAATACCCAAAACCTTTAGTCCCGGTTGGCTTACGAACCGGAACT
AAAGGCGCTTCACGTGGCCGCTGTCTGAAGCTCCACCTTTAGTTTTTTTATTTTCAAAATTTTGAATTATTTGACAATTT
AATCTGTAATCACCACCGCTCATCACTGCTCAGTGTGGAGCACTCATTCCAAATCGTCTAACTTCCAGGCCGGTTACCCA
TCCTCTCACTACTCCAG
>chr6D_175
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--------------GCCCACGTCCAGCCCAGTTGTAATTCGGCAAGGCTGCTAACAACGATGCCTACCACCTCACCTCAC
CTTACCTTATACCTCACCTAAAGCTAATCAATGATCGGAGGACGAAGATCAAGGTCAA-ACAAGAAATGCACATGCATGA
ATTAGAATGATTGGTTTGTTCAACGGTTCAACCAACATTTGCCACCTAGCTGTCTTCTCCTTGTACTTTCTTTGACCTCT
TTCGGCTACTGAAAGAGCTTTCTTTCCAAATTATGCACATTTG-TACAAACGGTCTATTTGTTATGTCATCTGTTTTGCG
TTCCTTGATGTTCTATTATCAAATTATTACACATGC-TTTTCAGTTCAGACAGTTCTATAAAAAATGATGGTACTGCCTC
TTCGGTTCCATAATATAAAAGCATTTTTAGCGCTAGTGTAGTGCCAAAAACAATCTTATATTATAAGACGGAAGAAGTAG
TAGCAAAGAAAATTTACCCTGCTAATTTGCGGTTGCTGATATTCGCGCATTAATTA---AACTTGTACCAACCTCTAACA
TGAAATTAGCTGGTCAATATGAGC--------GTTGAAGCC--AAAAAAGTGGCTGTAACGACTGATGAACATTGCTTTC
TTTAGCGCTAACGTATTTGACGTGATAGTGTGATCAACTAAACCCCATCGGTATCAGTGTAGCCCGCTTGGCACTAGTGA
TTTGTTCAAGGAATCAGGGTCGGGGGACGGTAGAGTTGTTGACGAGCACAACTAACCCAACTGCACCCGAACAAACCAAA
CCAAATCGCGTTAGTCAGTATACTAACTGCACCGCTTCGCTGAGCCTATATAGCCAGTAACCGCGGGTCCATCACCTGCC
ATCCTTGTACTCGCATTGCA------CAGCAAAGTCTCCAAGAATTCAAAGCCTCCAAGACCTTAACTTGATATCATGGC
TGGGCGTGGACTTTTAGCTGCAGGTTTGGTC---CTCCTCGCCGCCGTCGCCCCGGCCTACGCCGCGGACTACACCGTCG
GCGACTCGTCGGGCTGGGCTAGCGGCGTGGACTACAGTACCTGGGCAAGCGACAAAACCTTCACCGTCGGTGACACGCTC
GGTACGTGGTGCAGTACGACGATCATTGCTAGTACCAACGGTTCTCTTATTGATATTGGA---CCTCAAGTAGAGCACAG
CCCTACCAGTTTGACAAAATGGTTCATGTACTGTAGTCCTCCAGTACGTACTTA--------------------------
----------------------------------------CTGATTAGTTT-CTTTGTGTGCTTGCAGTGTTCCAGTACG
GCGCGTCGCACAACGTGGCGGAGGTGGGGTCGTCGGACTACAGCGCCTGCTCCGCCACCAACTCCATCCAGTCGTTCAGC
GACCAGGACACCAAGGTCACGCTCACCAAGCCCGGCACGCGCTACTTCATCTGCGGCGTCAGCGGCCACTGCTCCGGCGG
CATGAAGCTCGCCGTCAAGGTCGCCCCCGCAGCCGCCACCACGCCCACCCCGGCCACCTCGCCCGACGCGCCTTCGGCGA
CACCCTCCACGCCTTCGGAGACGCCCTCCACGCCTTCGGAGACGCCCTCGACGTCCACGACCCCTGCCGGGGCGACAACT
GCGCCTTCCTCGTCCAAATCAGCGGACAGCGTCGGCGGGGCCAGCGGTGTCGAGGCCCGCTCTGTGATGGGCTCTCTGGT
TGGGGCCGCGGGCCTTGTCGGCCTCGCCCTGATGGGCTAGGCAAGAGACTGTGCTTTGTTTCCCTTCTCCGAATTGTCCA
GTCCGCGTTTCC-----------------------------------TTCTTCCCGCCGAGTTGCACACTGTGTGCT---
A--TGGCTCCTCTTTATCTGGGGCCTTTTCATTTGTGCTCTGTTCTGTTCTGTGG-TAGATCCTCCGATTCGACCGCTAC
TCGTGCTTGTACGAGCACTTTGAAATATAGACTCTCCATGCCTGTG--TTGTGACGTGTCTTGCGAAATCGTGTTATCGG
AT---------------------------------------GTACGCGTGCATGCTGGCGTGGGGATCCGACGGTCCACG
TGAAGATGATTTGTATTACCGCCGGTACTTGTAAGGTACACGTCTATTGAACACAAAAGTTTAGATAATCAATAT-ATAC
CATATTAAAAAAAAGTAAACTTACAAAACTATGTAGAGTCATATATGTGCATAATGTAGATGTGGGTTTAATTCTCGTA-
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>chr6A_182
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---------------------TCCAGCCCAGTTGTAATTCGGCAGGGCTGCTAACAACGATGCCTACCGCCTCACCTCAC
CTTACCTTATACCTCACCTAAAGCTAATCAATGATCGGAGGACGAAGATCAAGGTCAATACAAGAAATGCACATGCATGA
ATTAGAATAATTGGTCTGTTCAACGGTTCAACCAACATTTGCCACCTAGCTGTCTTCTCCTTGTACTTTCTTTGACCTCT
TTCGGCTACTGAAAGAGCTTTCTTTCCAAATTATGCACATTTACTACAAACGGTCTATTTGCTATGTCATCTGTTTTGCG
TTCCTTGATGTTCTGTTATCAAATTATTACACATGTTTTTTCAGTTTAGACAGTTCTATTAAAAATGGTACCA-------
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TAGCAAAGGAAATTTACCCTGCTAATTTGCAGTTGCTGATATGTGGGCATTAATTATTTAACTTGTACCAACCTCTAACA
TGAAATTAGCTGATCAATATGACTATATGAGTGTTGAAGCCAAAAAAAAGTGGCTGTAACGACTGATGAGCATTGCTTTC
TTTAGCGCTAACGTATTTGATGTGATAGTGTGATCAACTAAACCCCATCGGTATCGGTGTAGCCCGCTTGGCACTAGTGA
TTTGTTCAAGGAATCAGGGTCGGGGGACGGTAGAGTTGTTGACGAGCACAACTAACCCAACTGCACCCGAACAAACCAAA
CCAGATCGCGTTAGTCAGTGTACTAACTGCACCGCTTCGCTGAGCCTATATAGCCAGTAACCGCGGGTCCATCACCTGCC
ATCCTTGTACTCACATTCCAGCTCCACAGCAAAGTCTCCAAGAATTCAAAGTCTCCAAGACCTTAACTTGCTATCATGGC
TGGGCGTGGACTTTTAGCTGCAGGTTTGGTCCTCCTCCTCGCCGCCGTCGCCCCGGCCTACGCCACGGACTACACCGTCG
GCGACTCGTCGGGCTGGGCTAGCGGCGTGGACTACAGCACCTGGGCAAGCGACAAGACCTTCACCGTCGGTGACACGCTC
GGTACGTGGCGCAGTACTACGATCATTGCTAGTATCAACGGCGCTCTTAGTGATAGTACTGGCCCTCAAGTAGAGCACAG
TGCTACCGGCTTGGCAAAATGGTTCGTGTACGTGCCAGCGCAGGCATGACTTGTTCGCCGGTGCACGTATTGTGTAGGCC
GGCTTTCG------------------TTGTGTAGGCCGACCTGACTGGTTTCCCATGTGTGCGTGCAGTGTTCCAGTACG
GCGCCTCGCACAACGTGGCGGAGGTGGGGTCGTCGGACTACAGCGCCTGCTCGGCCACCAACTCCATCCAGTCGTTCAGC
GACCAGGACACCAAGATCACGCTCACCAAGCCCGGCACGCGCTACTTCATCTGCGGCGTCAGCGGCCACTGCTCCGGCGG
CATGAAGCTCGCCGTCAAGGTCGCCCCCGCAGCCACCGCCACGCCCACCCCGGCCACCTCGCCGGAC-------------
--------GCGCCTTCGGCGACACCCTCCACGCCTTCGGAGACGCCCTCGACGTCCACCACCCCGGCCGGGGCGACAACG
GCGCCTTCCTCGTCCAAATCAGCGGACAGCGTTGGCGGGGCCAGCGGTGTCGAGGCCCGCTCCGTGATGGGCTCTCTCGT
TGGGGCCGCGGGCCTTGTCGGCCTCGCCCTGATGGGCTAGGCAAGAGGCAGTGCTTTGTTTCCCTTCTCCGAATTGTCCA
GTACACGTTTT----------------------------------TTTTCTTCCCGCCGAGTTGCACACTGTGTGCTACT
A--TGGCTCCTCTTTATCTGGGGCCTTTTCATTTGTGCTCTGTTCTGTTCTGTGG-TAGATCCTCCGATTCGATCACGAC
TCGTGCTTGTACGACCACTTTGAAATATAGATTCTCCATCTGTCTGTCTTGTGACGTGTCTTGCGAAATCGTGTTATCGG
AT---------------------------------------GTACGAGTGCATGCTGGCGTGGGGATCC-----------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS--------------------------S-----------S---------------------------
--S----S------------------------S---------------------S-----S-S-----------------
------S-------------------------------------------------------------------------
---S---------S----------------------------S--------S---------------------------S
--------------------------------S-----------------------------------------------
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-----------------S-----------S--------------S--------------------------S--S-----
-S-------------------------------S----S------S-S----------------------S---------
--------------------------S-----------------------------------------------------
---------------S-----------------------------S----------------------------------
--------------S---------S-----------------------------------------------------S-
-----------S--------------------------------------------------------------------
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----------------------------------------------------------------------------S---
-------------------S----------------------------S------S----------S-------------
-------------------S-----------SS---------S-----------------------SSSSSSS----SSS
SSSSSS-SSSSSSSSSSSSSSSSSSS----S----------------S--------------------------------
----------------------------------------------------S---------------------------
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------------------------------S---------------------S----------S----------------
-------------------------------------------------S------------------------------
-----------S-----------------------------------S--------------------------------
---S--S--S-----------------------------------------------------S-------------S--
--S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------SSS---------------S----SS-S
SSS--------------------------------------S-------S-----S----------S---------S---
-----------S--S-------------S------------SS-----S------------S--S-----S-------SS
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------SS------
---SS-SSSSSSSSS-SSSS--------------S--------S----S----SS----------------SSSSS----
-------S------------------SSS-S------------------------------------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_68
------------------------------------------------AAGAACAAGGGACTGCTGGG------------
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>reverse_1452
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-----------AGCAGTACGGCGCTATTGTT-------------------------------------------------
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>forward_1449
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---------------------------------------------------------------------AGTAGTAGCAG
CAGCAGCAG-----------------------------------------------------------------------
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>reverse_2820
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-------------------GCTGTCTGAAGCTCCACCTT-----------------------------------------
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