>input_sequence_67997
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-----------------------------------------------------------------------------ATG
ACGGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGTCCGTTCGTCCACCGTGCCAAGGTCGCCCTGCACCTCAAGGGAGT
CGCCTACGAGCTCATTACGGAAGACCTCTCCAACAAGAGCGAGCTGCTGCTCCGCCACAACCCCGTCCACCACAGGGTGC
CCGTGCTCCTCCACGGCGACAAGCCCATCTGCGAGTCGCTGGTCATCGTTGAGTACATCGACGAGGCCTTTGATGGCCCG
CCGCTCCTGTCAGCAGACCCCGGCGAGAGGGCCGAGGCCCGCTTCTGGGCCAAGTTCTTTGCGGAAAAGGTAGGTTATCA
TGCATGCCTGGAAA------CTATTTTTTACAACTCAAATTCGCTGTTCCAAAAAGGTTACATAGTG----------AAA
TAT-------ATTCTCATTATGTT--GTGTGCGTGACTTGTTTGATCA--------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GTGCCTGATGTCGGTG
TGGCTGGCGCTGTGGACGGAGGGCGAGACACGGAAGCTTCTCATGGAAGATGCTAAGGAACACTTGATGATAGTGGAGAC
GCAACTCAAGGAGAAGAGATTCTTCGGTGGCGCTGCTATCGGCCTCGCCGACATCGCCGGCGCCAGCGTTCTGTCCCACT
GGGCGGGCGTGCTGCAAGAGGTTGCTGGGATAACCGTCATGAGTGATGACGAGTATCCTGCTATCCACCGGTGGATGGAG
GACTACAACGCCGACGAAGTTGTCATGGAGTGCCTGCCAGATCGGGAGCAGCTTGTGTCCCACTTCACTGCTATCAGAGG
AAAGTGCATCGCCGCGGGGAAGTCCATGCTACCCAATTATGTAGCCAGCAAATAG-------------------------
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-------------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G488200
ATGTAATTTCGGTATCAATGATTTCGTGTCATATGCTGCTGGGAGAGCCATGCTACAAGAAAAATAATGCTACAGACGAC
TATCTCACCAACATATGGACCGTCGAATGGGGTACAAAATATAATCCCATCGCCATGGAGAAAAAGATGTTCAAAACTGG
GAGAAAAGTAATAATGCAGAAGATGAACAAGAAAGAAGAAGCAAACAAGGAGCCCGAAGTTGTTGAAAAAATTTCGGCGC
ACATTGAGCACATACAAAAAAGACATCGACTGAAAACCAAGACAATTTTGCGTGAAGAGGGGGAGCATGATTTTGTGATT
GGTCATGTGCAGTGAGCATTTTTGAGGAGCCCGAAGATGCTCTAGGGCTGGTCATAGTGAGAGTAACATAAGTAGTAACA
TAGTTGCCACATAAGCAAGAATGATGAGGTGGCAGGTAGTTAATGAGGAAAGAGGCAAATAAAGTAACATAATATGTTAC
CATCACATAGCGTTTTCCAATGCAAAATGAGTCTACAGAATAATAAATAAACTCAACTATGTTACCACACATATGACACC
ATCCACTATGAAAATAATAATATAAACTAGTAACATATGCATGTTATTGGTCTAAATTACTCTTCACTATAACCAGCCCA
CTAGCGTTTTGACGGGCCAAGGCC---TCGTCGTGTGCGGCCGAGAAAGCCCCCGCTGCCAGGTGCGTAGGGAGACGGGT
CAAATTTGAAATTTGGGCGTCCCGTTCTGCCGTTGCTGGTGTTCATCACCATTGTCTCATATTCCGAGATGCTCTTGACC
AAAATGATTTTACACGGTGAGAGAGATCG-----------AGTCTCGTGCCACCGCGGCAACGTGTGCTAGA--------
-----AACGAAACAACCAGCAGTCTTCTT-CTATCCCAAAAGACAAAGGCAAAATGACTTCCACTTTGACGAGCTGAGAG
GAATTCCTAGCAC-------TATATATACACGTACCAAC--CATACCTATCTTCCAGATCACGAACAAGGAAGCAAAATG
ACGGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGTCCGTTCGTCCACCGTGCCAAGGTCGCCCTGCACCTCAAGGGAGT
CGCCTACGAGCTCATTACGGAAGACCTCTCCAACAAGAGCGAGCTGCTGCTCCGCCACAACCCCGTCCACCACAGGGTGC
CCGTGCTCCTCCACGGCGACAAGCCCATCTGCGAGTCGCTGGTCATCGTTGAGTACATCGACGAGGCCTTTGATGGCCCG
CCGCTCCTGTCAGCAGACCCCGGCGAGAGGGCCGAGGCCCGCTTCTGGGCCAAGTTCTTTGCGGAAAAGGTAGGTTATCA
TGCATGCCTGGAAA------CTATTTTTTACAACTCAAATTCGCTGTTCCAAAAAGGTTACATAGTG----------AAA
TAT-------ATTCTCATTATGTT--GTGTGCGTGACTTGTTTGATCA--------------------------------
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----------------------------------------------------------------GTGCCTGATGTCGGTG
TGGCTGGCGCTGTGGACGGAGGGCGAGACACGGAAGCTTCTCATGGAAGATGCTAAGGAACACTTGATGATAGTGGAGAC
GCAACTCAAGGAGAAGAGATTCTTCGGTGGCGCTGCTATCGGCCTCGCCGACATCGCCGGCGCCAGCGTTCTGTCCCACT
GGGCGGGCGTGCTGCAAGAGGTTGCTGGGATAACCGTCATGAGTGATGACGAGTATCCTGCTATCCACCGGTGGATGGAG
GACTACAACGCCGACGAAGTTGTCATGGAGTGCCTGCCAGATCGGGAGCAGCTTGTGTCCCACTTCACTGCTATCAGAGG
AAAGTGCATCGCCGCGGGGAAGTCCATGCTACCCAATTATGTAGCCAGCAAATAGACCTAAGCTA--------GTGGTCC
GTGTGATGCCTCCGGCTTGAGGCCCTATTTGGTTCCAAATAAGTCACCTGATTTATAAGTCAAGTGATTTTAAAATCAAT
AACTTATAAGTCATAACTGTTTGGTTGTCACCTGACTTATAAGTCACCTAACCACATCTTCTCATCTTGTTTTTTTATAT
AAAGGTGGTGGGACCCATGCAAAAGGGATGACTTATAAATGTTAAGTTGGGATGAAGCAACTTATGACTTATGGTCTGTT
TGGTTCCAATAAGTCACCTGACTTATAAGTCAGGTGACTTAGAATCAATGACTTATAAGTCACGCCTGTACGGTTGTCAT
CTGACTTATAAGTCACCTGACCACACCTTCCCACCTTGTTTTTCAATGTAAAGGTGATGGAACCCACGTAAAAGGGGGTG
ACTTATAAGTTTTAAGTTAGGGTGAAGCAACTTATGACTTATAAGTTGGGGTGACTTATAAGTTGGGTCCGTTTGGCAAA
ATAAGTCATTTTTTGCACTTTTCGACTTATAAGTTGGTGACTTATTTAAAACCAAATAGGGCCTTATAAGTTGAGGTAAC
TTATAAGTTGAGTCTGTTTGGTAAAATAAGTCACTTTTTTCATTTTTTGACTTATAAGTTGGTGACTTATTTGGAACCAA
ACAGGTCCTAAACTACATGAATATCCGTCCTAAAATAAGACATAGGG-CAGTTGGTGGAATGTTATTGTTCGATGCCACT
GTGCTCGGTTTGCTTATAGTTTGCCTATGCAGGAATAAGATATATATGCTCTTGGGAAGTACATGTTTGGTTGATAATTG
AA------------------------------------------------------------------------------
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---------------------------------------------------------ACATCCATGAGTTCTTTTGGTCA
TAAATAACACTTGTTTCGATGCTTGCCGACACTTTGAAGGCTTCCCTACTGTTCCGGGGCTATGCATTGGGTAAATAAGA
AATTATTTGGCGCCTTAAGCATCAATTTTTTTTAAGCTCCTTAAGCATCAAATAGGACATTCCACGAATACACAGTGAG
>chr3D_634
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-------------------------------------------------------------------------CAGCGCA
CTGGAGTTTTGATGGGCCGAGGCC---TCGTCGTCTGCGGCCGAGAAATCCCGCGCTTCCAGGTGCGGGGGGAGACGAGG
CGAATTCGAAATTTGGCCGTGCCGTTCGGCCGTTGCTGGTCATCATCACCATCGTCTCATATTCAGAGATGCTCTTGACC
AAAATGCTTTCACACAGTGAGAGATTGGAAAAAAGAAAAAAGTCTCGTGCCACCGCGGCGACGTGTGCTAGAAAACTAGT
GTAGAAACGAAGCAACCAGCAGTCTTCTT-CTATCCCAAAAGACAATTGCAAAATGACTTCCACTTTGACGAGCTGAGAG
GAATTCCTACCACCT------ATTTATACACGTACCAAC--CATACGCATCTTCCAGATCACGAAGAAGGAAGCAAGATG
ACTGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGCCCGTTCGTCCACCGTGCGGAGGTGGCCCTGCGCCTCAAGGGAGT
CGCCTACGAGCTCATCACGGAAGACCTGTTCAACAAGAGCGAGCTGCTGCTCCGCCACAACCCCGTCCATCACAGGGTGC
CCGTGCTCCTCCACGGCGACAAGGCCATCTGCGAGTCGCTGGTCATCCTCGAGTACATCGACGAGGCCTTTGATGGCCAG
CCGCTCCTGCCAACCGACCCCGGCGAGAGGGCCGAGGCCCGCTTCTGGGCCAAGTTCTTTGCGGAAAAGGT----TACCA
TGCATGCCTGAATATTACTCCTATTTTTTACAATTCAAATTTGTTGTCGCAAAAAGTAGGATTGGCAAACAATTTCGAAA
TACATACTCAATTCTCATTATGCC--GTGTGCGTGAATTGTTTGGTCA--------------------------------
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----------------------------------------------------------------GTGCCTGATGTCGGTG
TGGCTGGCGCTGTGGACGGAGGGCGAGACACAGAAGGTTCTCATGAAGGATGCTAAGGAACATCTGGCGATAGTGGAGAC
ACAGCTCAAGGAGAAGAGATTCTTCGGAGGCGTTGCCATCGGCCTCGCCGACATCGCCGGCGCCAGCGTGCTGTCCCACT
GGGCTGGCGTGCTGCAAGAGGTCGCTGGGATAACCATCATGAGCGATGACGAGTATCCTGCTATTCGCCGGTGGATGGAG
GACTACAACGCCGACGAAGTTGTCACGGAGTGCCTGCCGGATCGGGACCAGCTTGTGTCCCACTTCACCTCTATCAGAGG
GAAGTGCGTCGCCGCGGCCAAGTCCATGCTACCCAATTATCTAGCCACCAAATAGACCTAAGCGGCTAAGCTTGTGGTTA
GTGTGATGCCTGTGGGTTGAAT----------------------------------------------------------
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-------------TACACGAAGATCTGTCGTAAAATAAGACATAGGGGCAGTTGATGGAATGTTATTGTTCAATGCCACT
GTGCTCGGTTTGCT--TAGTTTGCCTATGCAGGAATAAGATATATATGCTCTCGGGAAGTACATGTTTGGTTGATAACTG
AAACTAGTCCTGGCCATGGGAAGCCCGGCCCGGCCCGAAAAAGCCTGACCCGGCCCGACGCTGCTCCTGGGCCGGGCTCG
GGCCTAGATTTTGATCCTGATGGCCGAGCCGGGCCAGGCCCGGGCCCATCGTTTTTGCGCTTTTCTGAAAAGGCCCGGCA
GGCTTTTACGCGTTCGGCCGAGCTTGGGCCCAAAAACTAGGCCCGATAGCCGGGTCGGGCCGGGCCCGGGCCTAGGTTTT
TTGCCTCGGGCTTGGCTAGCCCCGGCCCGGCCCGAGGTTTGGCCAGGTATAACTGAAACATCCATGAGTTCTTTTGGTCA
TAAATAACACTTGTTTCTATGCTTGCCGAAATTTTTGGAGGTTCCCCTGCTGTTC-------------------------
-------------------------------------------------------------------------------
>chr3A_639
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------------------------------------------------------------------------------CA
CTAGCGTTTTGATGGGCCGTGGCC---TCGTCGTCTGCAGCCGAGAAAGCCCGTGCTGCGAGGTGCGGAGGGAGACGAGG
CGAATTCGAAATTTGGCCG-CCCGTTCTGCCGTTGCTGGTCATCATCAACATCGTCTCATGTTCGGAGATGCTCTTGACC
AAAATGCTTTCGCACGGAAAGAGACTACG--AAAAAGAAAAGTCTCGTGCCACCGCGGCGACATGTGCTAG-AAACTACT
GTAGAAACGAAGCAACCAGCAGTCTTCTTATG-TCTCAAAAGACAAAGGCAAAATGACTTCCACTTTGACGACTCT-GAG
GAATTCCTAGCACCTTATATTATATATATACGTACCAACACCATACGCATC-TCCAGATCACATAGAAGGAAGGAAGATG
ACTGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGCCCGTTCGTCCACCGTGCGGAGGTGGCCCTGCGCCTCAAGGGAGT
CGCTTACCAGCTCATCACAGAAGACCTCTCCAACAAGAGCGAGCTGCTGCTCAGCCACAACCCCGTCCACCACAGGGTGC
CGGTGCTCCTCCACGGCGACAAGGCCATCTGCGAGTCGCTGGTCATCCTCGAGTACATCTACCAGGCCATTGGCGGCCCG
CCGCTCCTGCCAACCGACCCCGGCGAGAGG-CCAAGGCCCGCTTCTGGGCCAAGTTCTTTGCCGAAAAGGT----TACCA
TGCATGCCGGAATA------TTATTTTTTAGAACTCAAATTCATCTTTGCAAAATGTAGGATTCGCCAACAAATTCCAAA
TAT-------AATCTCATTATGCCATGTGTGCGTGAATTATTTGATCAGTGCCATAGTTTTAAATAGCCGGCTACTATAG
CTCTGCTATAGCCCGCTATATAGCCTTTTCAGCAGGGTGCCGCTAAATGGCCGCCTTCACAAATAGCCAGCTATAGCTTC
GCTCCGCTATAGCTAATTTGAAGGCCCGTCGCTATTTTTCTTAGGCTGCTATTTAAAACATTTAGTGCCTGATGTTGGTG
TGGCTGGCACTGTGGACGGCGGGCAAGACACGGAAGGTTCTCATGGAGGATGCTAAGGAACACTTGGCGATAGTGGAGAC
GCAGCTCAAGCAGAAGAGATTCTTCGGAGGCGCTGCCATCGGCCTCGTCGACATTGCCGGCGCCAGCGTGCTGTCCCACT
GGGCAGGCGTGCTGCAAGAGGTCGCAGGGATAACTGTCATGAGGGATGACGA--------------------GGATGGAG
GACTACAACGCCGACGAAGTTGTCACTAAGTGCCTGCTAGATAGGGACCAGGTTGTGACCCACTTCATCGTTATCAGAGG
GAAGTGCGTCGCCGCGGCCTAGTCCATGCTACCCAATTATCTAGCGAGCAAATAGAC---------TAAGCTAGAGGTTC
GTGTCGTTTGAATTAAG---------------------------------------------------------------
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----------------ATGAAGATCTGTCGTAAAATAAGACATAGGGGCAGTTGGTGGAATGTTATTGTTCGATGCCACT
GTGCTCGGTTTGCC--TAT-------------------------------------------------------------
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-------------------------------------------------------------------------------
>chr3B_639
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------------------------------------------------------------------------------CA
CTAGCGTTTGT-TGGGCCGTGGCCTCGTCGTCGTCTGCGGCCGAGAAAGCTCGCGCTGCCAGGTGCGGAAGGAGACGAGG
CGATTTTGAAATTTGGGCGTCCCGTTCTGCCGTTGCTGGTCATCATCACCATCGTCTCATATTCCAAGATGCTCTTGACC
AAAATGCTTTCACACGGTGAGATTGAG--AAAAAGAAAAAAGTCTCGTGCCACGGCGGCGACGTGTGCTAGAAAACTACT
GTAGAAACGAAGCAACCAGCAGTCTTCTTTCTATTCCAAAAGACAAAGGCAAAATGACATCCACTTTGACGAGCTGAGAG
GAATTCCTAGCAC-------TATATATACACGTACCAAC--CATACCCATCTTCCAGATCACGAACAAGGAAGCAAGATG
ACTGAACCGGTGAAGCTCATCGGCGCCTTCGGCAGCCCGTTCGTCCACCGTGCGGAGGTGGCCCTGCGCCTCAAGGGAGT
CGCCTACACGCTCATCACGGAAGACCTCTCCAACAAGAGCGAGCTGCTGCTCCGCCACAACCCCGTCCACCACAGGGTGC
CGGTGCTCCTCCACGGCGACAAGGCCATCTGCGAGTCGCTGGTCATCCTCGAGTACATCGACGAGGCCTTTGACGGCCCG
CCGCTCCTTCCAACCGACCCCGGCGAGAGGGCCGAGGCCCGCTTCTGGGCCAAGTTCTTTGCGGAAAAGGT----TAGTA
TGCATGCCTGAATA------TTATTCTTTACAACTCAATTTCGTTGTTGCAAAAAGTAGGATTCACCAACAAATTCGTAA
TAT-------ATTCTCATTATGCCGTGTGTGCGTGAATTGTTTGATCAGTGC----------------------------
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--------------------------------------------------------------------CTGATGTCGGTG
TGGCTGGCGCTGTGGACGGAGGGCGAGACACAGAAAGTTCTCATGGAGGATGCTAAGGAATACCTGACGATTGTGGAGAT
GCAGCTGAAGGGGAAGAGATTCTTCGGAGGCGCTGCCATCGGCCTCGCCGACATCGCCGGCGCGAGCGTGCTGTCCCACT
GGGCAGGCGTGCTGCAAGAGGTCGCTGGGATAACTGTCATGAGCGATGACGAGTATCCTGCTATCCACCGGTGGATGGAG
GACTACAACGCTGACGAAGTTGTCACGGAGTGCCTGCCGGATCGGGACCAGCTTGTGACCCACTTCACCGCTATCAGAGG
AAAGTGCGTTGCCGCGGCCAAGTCCATGTTACCCAATTATCTAGCCACCAAATAGACCTAAGCTA--------GTGGTTA
GCATGACCCACGTGGGTTGTAT----------------------------------------------------------
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-------------TACATGAATATCTGTCGTAAAATAAGACATAGGGGCAGTTGGTGGAATGTTATTGTTCGATCAAATT
GTGCTCGGTTTGCT--TAGTTTGCCTATGCAGGAATAGGATATATATGCTCTCGGGAAGTACATGTTTGGTTGATAACTG
AA------------------------------------------------------------------------------
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---------------------------------------------------------ACATCCATGGGTTCTTTTCGACA
TAA-----------------------------------------------------------------------------
-------------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--
------------S-----S---------------S-----------------S--------------S---------S-S
-S--------------------------------------SS----------S---------------------------
------S---S---------------S--------------------------------S--------------------
-----------S--------------------------------------------------------------------
-----------------------------------------------S----------------------------S---
--S--------------------------------S-----------------SS----S-------S------------
---------------S----------------------------------------------------------------
-----------------------S-----------------------S-S------------------------------
---------S--S-S--------------------------------------------------------SSSS--S--
----------S-S------------------------------S----S-------SSSSSS-S-SS-------------
----------------------SS------------S-------------------------------------------
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------------------------------------S----------S-------------------S------------
---S-----------------------S--------S--------------------------------S----------
----S-----------------S--------------------S------------------------------------
-------------------------S---------------------S--------------------S-----------
-------S---------SS---------------------S-------------------------------------S-
-----------SS--S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS------------S---S--------------------------------------------------
--------------SS------------------------------------S------------------------S--
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-----------------S-----------S-S---SSSS-S-----SSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_374
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----------------------------------AGATGCTCTAGGGCTGGTCA--------------------------
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>reverse_2421
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--------------------CCACACCTTCCCACCTTGTT----------------------------------------
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