>input_sequence_67979
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-------GTTTAAATTCTGACGCAGACGCAGGAAATCAAACCAAGCACAAGCACCCGCCGCAGATAGATCGATTGCAAGA
ACTCGAGCTTCTGGTCTAACTCACGGCGAGCCGGCGATCGATTGCTTGCAACTCGAGC-------------AGAGCATGG
AGGCGGTGAAGAAGAAGCAGCTGGAGGCGCAGCTGGATGCGGCGGAGAAGCTGTTCGCGGCCGGCGACCTCAGGAGGGCC
AGGATGCACGTCGACATGGCCGTGGCCATGGACCGCTCCCGCTCCGGGGCCTGCCCGGAGGCCCAGCGCGCGCGCGCCGC
CTACAGGGTCCTCGCCGCCG---------ACAAGGCCGACCACTACAGCGTCCTCGGCGTCGCGGCCCCGCCCGGCGGCA
GGCCCACCAAGGAGTCCCACGACGCCGTCAAGTCCCAGCACAAGGCGCTCTGCGACATGTTCGACCCCAGCAAGGCCGGC
GGCACCAGCGCGGCCGTCGCCGGCGCGTTCAAGCTCGTCAACCAGGCGTTCGCCGCGCTCACGGACATCAGGAAGAACGA
GGGCGCGGTGCCGGGGAAAGCTCCCGCTC---------CTCGCCACCGCCTGCCGCCGCTGCTCCCGGTGCCGCGTCCCA
AGGCCAAGGCGGCCGCAACGCCAGCCCGGGTGGTCGTGGTGGACGCCGC------CGCCGACGATGATCCTCTCGCTGCT
GTCTTCCTGGACGAGCCGGTGGTGCCAGAGCACAAGGGGCATGACGCGGAGGCAGT---GGAAGGCGAGGAGGAGGACTA
CAACCCTGGCGGCCGCGGCCGCGGTGGACGTCGTTAAGA----AAGGAAGGCCGATCAATCAAGACTCA-----------
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>chr5B_1_TraesCS5B01G059700
AAGAGAGAATAAACATAGGAAAAAAGGGAAAACTATTTAGAACCGATGAAAAATACAGAAATGATAGAAAAACTAATAAT
CAAGTAGTATTTTCCGAAAGCCGGAAAAATTTGTCGTCCTAGGAACACATATAAAATGTTACGAATTCAAAACATGAATT
TAGAAGAATACTCATCAGATTCTAAACATGAATCCTCTCCATATTTTTTCCCTTGAAATGACCTA-TCACTTCTTGATTG
TCACCATAATCAGTCGCCACATTTTTTCAATGTCAGTCCAAGGTGCATTGTTAAAAACATGGGCATTCATAGTTTATCAA
ATGCACCATAAAACACAAGCATAGACTGAATTAAGGATAATGTGATTGTTATTAGTAGGTCAATATCTAGCAACAGAGAT
ATAATCCGTTCCTAGGTTGAAACTGGAGGAATTAGACAAAATGCTCCCAAATTTGTTTTGCTACCACACATTCAAAGAAT
AAATATGCACTAATTTCATGCATGCTCTGACCA-----------------------------------------------
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-------------------------------------------------------------GAAAACGCAAAATATGGGT
CTTGCCCGTATTTCTCTTTTCTATGTTGTCATCTCTAGTCATAAGTTTGTTGCCCGTATTTTATGCATTTTTCTTTCAAC
AAACGGGTTCAAGTGCACTAAACTGTTTAAACTATTCTCTCTTT------------------------------------
--------------------------------------------------------------TTTTCACAAATATGAGTA
AAGCTAAAAAAAATGTACCAAAAACAGCCGTCGGGTCAGTTCACCCCACAGCTGACACGTAGAATCGCCACTGCTTTCCA
CCCTCCTAGAGTAAACAATAATACCGTTAAAAAACATCTGTTTTGATAAGTTTGTGCGAATTTGATAAATTCCACTCAAA
TTTTCTTGGCAAGTACATAATCAGTTATAAATCTTGTCCGACTAGTATTCAGCTTGCGTACCTCCCGTTGATTTTTTTGC
CTATAATCCAACGTGACTGAACATGTGCCGGAGCCGGACACGACACGAATCCGACACCGGCCATGCATCGGACAGGATCG
ATCGAGTGTTTAAATTCTGACGCAGACGCAGGAAATCAAACCAAGCACAAGCACCCGCCGCAGATAGATCGATTGCAAGA
ACTCGAGCTTCTGGTCTAACTCACGGCGAGCCGGCGATCGATTGCTTGCAACTCGAGC-------------AGAGCATGG
AGGCGGTGAAGAAGAAGCAGCTGGAGGCGCAGCTGGATGCGGCGGAGAAGCTGTTCGCGGCCGGCGACCTCAGGAGGGCC
AGGATGCACGTCGACATGGCCGTGGCCATGGACCGCTCCCGCTCCGGGGCCTGCCCGGAGGCCCAGCGCGCGCGCGCCGC
CTACAGGGTCCTCGCCGCCG---------ACAAGGCCGACCACTACAGCGTCCTCGGCGTCGCGGCCCCGCCCGGCGGCA
GGCCCACCAAGGAGTCCCACGACGCCGTCAAGTCCCAGCACAAGGCGCTCTGCGACATGTTCGACCCCAGCAAGGCCGGC
GGCACCAGCGCGGCCGTCGCCGGCGCGTTCAAGCTCGTCAACCAGGCGTTCGCCGCGCTCACGGACATCAGGAAGAACGA
GGGCGCGGTGCCGGGGAAAGCTCCCGCTC---------CTCGCCACCGCCTGCCGCCGCTGCTCCCGGTGCCGCGTCCCA
AGGCCAAGGCGGCCGCAACGCCAGCCCGGGTGGTCGTGGTGGACGCCGC------CGCCGACGATGATCCTCTCGCTGCT
GTCTTCCTGGACGAGCCGGTGGTGCCAGAGCACAAGGGGCATGACGCGGAGGCAGT---GGAAGGCGAGGAGGAGGACTA
CAACCCTGGCGGCCGCGGCCGCGGTGGACGTCGTTAAGA----AAGGAAGGCCGATCAATCAAGACTCACTAAACGCTCT
TTTGTAATGGAGTATTATGAGACAGCCGGAGTAGTACATTATTTGCTTGTTTAGTTCAAGATGTTACATTGTTTTCTTGT
GTTTCTCCTTGAGTCAAGTTGATTTATATGTACC------GATTCATGGCTTGGGATAATCATGAGATTTATTGGTAGTG
GATTCTTTTTGTTTACAATTCGAATTTATAGTGGAATTGATGATCGAAACTTCCTCGTTCAAACAGATGAAAGCTATGCT
AAGTTAAACGTGTAATTTGTCCAATTATTCACTCGATGCGAAACATGATGTCTAGGACCCACAGAACTAGCTGCACTTTC
GGTTGTGGCAGATGGAGAGGACGATGACGGTGACGTTGAGCTTGATCTTCATGTTCCGGTATCGCAACCATGCGGAATTC
GCGTGCCCTAGGTCCTCAAATTCGAGGCATGGTCATGGAGCTCGTCATCGGGCCCTCAATCTGCTCCCCGCAGTCGTCTG
TATGAAAGATAAATCTTGCATGTATTTTTTTTCTCAAAATGTATTTTTCTTTTTCCAGCAATGCTGTTGTTCTCAGCAAA
CTTTGCTGTGGCTATCATATACTCCCTCCGTCCGGAAATACTTGTCCTCGAAATGGTTGTATCTAGACTTATTTTAGTTA
TAGATACATCCATTTTATCCAATTCGAGGACAAGTATTTCCGGACGGAGGGAGTATGAAAGACAG---------------
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--------------AAAAAAAAACAGAACATTACTC--------------------------------------------
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----------------------------------------------------------------GTACTCCCTCTGTCCA
GAAATACTTGTCATCAAAATGAATAAAAGGGGATGTATCTAGATGTATTTTAGTTCTAGATACACTCCTTCTTGTCCATT
TTGACGACAAGTATTTTCGGACGGAGGGAGTACTGAATATTGGTTGTATTCAACACAGGCAACTTACTGCACGACCACAG
CAGAAAAAAAAGAGCACTTAAAAGAAGATACATGAACAAGCAAAATAGTTAAAAGAGTTGTTGTTCCAACAAATTGGTGG
CAAAGATATTAC--------------------------------------------------------------------
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>chr5D_192
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-------------------------------ATCCTCTCCAAATGTTTTCCCTTGAAAATGATATGTCACTTCTTTATTG
TCACCATAAACTGTCACCACATTTGCTTAGTGTCAGTCCAGGGTGCATCGTTAAAATCATGGGCATTCATAGTTTTTCAA
ATGCACCATAAAACACAAGCATGGACCGGATTAAGGACAATGTGATTCTAATTAGCAGGAC-------------------
----TCGGTTCCTGGGTTGAAACAGGAGAAATTAGACAAAATGGTCCCAAATTTGTTTTGCTACCACACATTCAAAGAGT
ATATGTGCACTAGTTTCATGCTCAAAGAAGAAAACATAGACGTGAACCAACCTGTGGTAGGATGGTTAGAGAGACCGTGG
TATCCCAAGCCCACTAGGGTTTAAGTTCTGATGCTCGCATTATTCTTGGATTTGTTTCAGGACTTTGTAAATTTCAAGAT
GACATGCCGGCTCAGTCTCTCGAAGAGCGCTTGCGTCTGTACTGATGTTTAAAAAAAAGATGAAAACATAGACTAGGGGT
TTCTA-------------------GTTATTATCTCTAGTCATAAGTTTTTGTGACGCAAAAGGCAGACTCGAAACTTTAA
GTAAATGTACACTTAGCGCCAGTGGCGACGTTAGCACCAAAATATTCAATTTAAACGTCTTATATTTTCATAAGAAGGTT
TTGTATAGGCTAAAAGACTTCTTATATTTTGGTACAGAGGTACTCCCTCCGTTCGGAATTACTTGTCATAAAAATGGATG
TATCTATAACTAAAATACATCTAGATACATTCATTTCTTGGACGAGTAATTCCGAACAGAGGGAGTAGCATG--------
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-----------------TAATTAGTTATAAATCTTGTCCGACTAGTATTCAGTTTGCCTACCTCCCGTGA----TTTTGC
CTATAACCCAACGTGACTGAACATGTGCCGGA-----------CACGAATCCGACACCGGCCATGTATCGCACAGGG---
-TCGAGTGTTTAAATTCTC------ACGCAGCAAACCAAACCAAGCACAAGCACTCGGCGCAGATAGATCGATTGCAAGA
ACTCGAGCTTCTGGTCTAACTCAGGGCGAGCCGGCGATCGACTGCTTGCAACTAGAGCCTCGAGGCACAGCAGATCATGG
AGGCGGTGAAGAAGAAGCAGCTGCAGGCGCAGCTGGAGGCGGCGGACATACTGTTCGCGGCCGGCGACCTGAGGAGGGCC
AAGATGCACGTCGACATGGCCGTGGCCATGGACCGCT------CCGGGGCCTGCCCTGAGGCCCAGCGCGCGCGCGCCGC
CTACAGGGTCCTCGCCGCCGCCAACAGCAACAAGGCCGACCACTACGGCGTCCTTGGCGTCGCGGCGCCGCCTGGCGGCA
GGCCCACCAAGGAGTCCCACGACGCCGTCAAGGCCCAGCACAAGGCGCTCTGCGACGCGTTCGAGGCCGACAAGTCG---
------AGCGCGGCCGTCGCCGGCGCGCTCAAGCTCGTCAAGCAGGCGTTCGCGGCGCTCACGGACATCAGGAAGAACGA
GGGCGCGGTGCCCGGGGCGGCGCGCGCGGCCGCGCCAGCTCGCCACCGCCTGCCGCCGCTGCTCCCGGTGCCGCGTCCCA
AGGCCAGGCCGGCCGCCGCGCCCGTGCGGGTGGTCCTGGTGGGCGAGCAGCAGGTCGCGGCCGATTATCCTGCTGCTGCT
GCCTTCGTGGACGAGCCGGTGGCGCCGGAGCAGAAGGTGCACGGCGTGGTGGCAAACGAGGAGGAGGAGGAGGAGGACTA
CTACGCCGGCGGTGGCGGCCGCGGTGGACGTCGTTAAG------------------------------------------
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>chr5A_1047
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-----------------------------------------------------CCCGCCGGCGATCGATCGATTGCAAGA
ACTCGAGCTACTACTGGT--TCACGGCGAGCCGGCGATCGGTTGCTT----------------------GCAGATCATGG
AGGCGGTGAAGAAGAAGCAGCTGGAGGCGCAGCTGGAGGCGGCGGACAAGCTGCTCGCGGCCGGCGACCTCAGGAGGGCC
AAGATGCACGTCGACATGGCCGTGGCCATGGACCGCT------ACGGGGCCTGCCCGGAGGCCCAGCGCGCGCGCGCCGC
CTACAGGGTCCTCGCCGCCG---------ACAAGGCCAACCACTACGCCGTCCTCGGCGTCGCCGTGCCGCCCGGCGGCA
GGCCCACCAAGGAGTCCCACGACGCCGTCAAGTCCCAGCACAAGGCGCTCTGCGACATGTTCGACCCCGGCAAGGCCGGC
GGCACCAGCGCGGCCATGGCCGGCGCGTTCAAGCTCGTCAACCAGGCGTTCGCCGCGCTCACGGACATCAGGAAGAACGA
GGGCGCGGTGCCGGGGAGAGCTCCCGCTC---------CTCGCCACCGCCTGCCGCCGCTGCTCCCGGTGCCGCGTGCCA
AGGCCAAGGCGGCGGCCGCGCCAGCCCGGGTGGTCGTGGTGGAGGCCGC------CGCCGACGAAGATCCTCTTGCTGCT
GTCTTCCTGGACAAGCCGGTGGTGCCAGAGCACAAGGGGCATGACGCAGAGGCAGT---GGAAGACGAGGAGGAGGACTA
CAACGCCGGCGGCCGCGGCCGCGGTGGACGTCGTTAATTAGGGAAGGAAGGCCGATCAATCAAGAGTCACTAAAAATATT
AGTCG----------------------GGAGTAGTACATTGTTTGCTTGTTTAGTTCAAGATGTTACATTGTTTTCTTGT
GTTTCTTCTTGAGTCAAGTTGATTTATATGTACCCTGTTTGATTCATGACTTGGGATGATCATGAGATTTATTGGCAGTG
GATTCTTTTTGTTTGCAATTCGAATTTGTTGTGGAATTGATGGTCGAAACTTCCTAGTTCAAATGGATGAAGGCTATGCT
ACGCTAAATGTGCAATTTGTGCGATTATTCACTTGACACCCTGTCACGTGTTAGCAACCTGTTGTTCG------------
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------------------------------------------------------------------------TCAACACA
CTTTGCTTTTGCTAGCCAGGATGGCTTCAAGAAGTGGCTAACTCCGATGAGACGGACCCAGACATTC-------------
---AAATAACCAATTTTCACTAATCTAAGAAAACAATTTCACTACTACAACAATAACAACAACAAAGCCTTTAGTCCGAA
ATAAGTTGGAGTAGGCTAGAGCTCGAACTCATAAGATCTGGCAACCAACTCATGATTCTGGCACATGGATAGCTAGCTTC
CATGCACCCCCTGTACATGGCTAGTTTTTTGGTGATATTGCAGCCCTTTAGATATCTCTTTATGGACTTCTCTCATTCTA
AGTTTGGATTTAAAAAACAATTTAGCTCATTTCAAACAAATAATTTCACTCACTTTAAAAAATATTTCACACGTTTTAAA
AGTTTTATTTTACTCGTTTTAAAAAACATATTTCACTTATTTTAAACCACTGATTTTCCTTAGTTCAAGAAATAATTTCA
CTCATTTCAAAAACTGATTTCAATCATTAAAAATTTGTTTCCCTCATGTAAATGTTTCCACATATTGAGAAAAAAGCAGT
GACATCTTTTTTCAAAAAAAAAACACAGTTTCATATATTTGAAATAATCGGTTTCACACACTAGAACAATCAATTTGACA
AGACTGATTTCTATTCTTTCAAATAACATATTTCAACCGTTTTGAGAAATGGATTTCATTCATTTAAAGAACATAGTTCA
TTCATTCAAGTTAACCGAGTGAAGTTATTTTAAAAAACTGATTTCACTCATCTTCACAAGTAGCATATTTCAGTCGGTTA
TATTTTAAAAATATCATTTTCACTCACTGTAATAAGGAGCTTCACAAATTTTAAATCAATTTCACATATATGAACAAAAA
CTATTTCACATTGGAATTGAGATGAATGCAATAACTAACTTCACAAATAAACTCAGCGAAATAAGCAGCTTCAGAAAATA
GCATGTTCAAACTTTAGTTATATTCCACAAATATCAGTTTCACATACTGAAGCAAGCAGCTTCACAAATAAGCAATTTCA
CACAGTTGAACTATTTGAGTGAAATAAATGGATTGGAACTTTAAAATTTAAACATATTTGAAATGTAGTCCCTCAGTTCC
AAAATAATTTAAGTTCTAGGATTGTCTAAGTCAAACTTTTTAAAGTTTGACCAAGTCTATAGACAACCCGCAAAGATCTG
TGATATCAAATGTAATAATATGAAAATTCATTTCCTAATAAATCTGATGAAGTATATTTGTTTTTGAAGACATTGATAAA
TTTTGCTATAGTGTATAGACTTGATCAAACTTGAAATGAAATATCATAAGTCAATCTGGGCTCCAGCCCAATATACCCGG
CCCACACATCAGCTGATCCAGTTGTGATCCAATGTGATGAGTTGCTGAACATGAGCCGGACGGAGAGCTCTGCCTTCCCG
CGCGAATCCGATTTCGACGCCGACCATGTCTCGGCCGGCCAGGATGAGTCCTTAAATTCACACGCACCACACCAAGCACC
GGCAGCAACAACTCACGGTGATCGATCGATTGCAAGAACTCACGGTGAGCCGGCGACCGATCGCGCAACTCGAGCAGATG
GAGGCGGCGGCCGTGGCGGTGAAGAAGAAGCAGCTGGAGGCGCAGCTGGAGGCGCAGCTGAAGGCGGCGGACAAGCTGTT
CGCGGCCGGCGACCTGAGGAGGGCCAAGATGCACGTCGACCTTCACGCCTAGAGGGTCCTCGCCGCCGCCAACAGCAACA
AGGCCGACCACTACGGCGTCCTCGGCGTCGCGGCGCCGCCCGGCGGCAGGCCCACCAAGGAGTCCCACGACGCCGTCAAG
GCCCAGCACAAGGCGCTCTGCGACGCGTTCGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S--S-------------SSSSSSS----------S----
---------S-S---S--------SS-S-S----------S-------S-------S------------------S----
----------------------S---S-S--------S---------S-S-----S---S-SSSSSSSSSSSSSSSSSSS
SSSS--S------S---------S----S--------------S----------------------------------S-
-S--S-------S--------SSSSSSSSSSS------------------------------------------------
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-------------------------------------------------------------------SS-S-S--S----
S-SSSSSSSSSSSSSSSSSSSSSS---S-S------------------S-SSSS--S-SSSSSSSS-S-SSSSSS-SS-S
SS-SSS--S--SS-SSSSSS-SSS-SSSSSSSSSSS-SSSSS-S------------------------------------
----------------------------------------------------------------S---S---S---SS-S
S-S---S--SS--SS---SSSS-SSSS-SS--SSS--SSSSSSSSSS-SSS-S--SSS-SS-S-SSSS--SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS----S------------------------------S----S----------SSSSSS------
------S-------------------------SSSSSSSSSSS----------------------S----S-----SSSS
S-----------------SSSSSSS------S---S--------------------------------------------
-----------------------------------------------------S--------------------S-----
-------------------------------------S--------S---------------------------------
-S-----------------------------------SSSSSS-------------------------------------
----------------------------------------------S-------------------S-------------
--------------------------------------------------------------------S-----------
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-----------------S--------------------------------------------------------------
----------------SS-------------------------------------------------------S------
----------------------------------------------------------------S---------------
----S-S-------------------------------S--------------------------S--------SSSSS-
SS-SSSSSSSSSSSSSSSSSSSSSSSS-------------S---------------------------------------
------S-----------------------------------------S--------S-----------------S----
--------------S------------S-S------------S------------S-------SS------S--------
-S-S----S---S-------S-S----------S--SS-SSSSSSSSS---SSSSS---SSSS-SS-SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S-
-------S-S----S-SSSS-SSS-S--SSSSS-SSSS--SS-SSSS-SSS-SS-SSSSSSS-SSSSSSSSSSSSSSSSS
SSS-S-S-S---S---SSS-S-S--S-S--S--SS-----SSS--SSSSSS-S--SS--SS---S---------------
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-------------------------S-SSS-S-SSS--------------------------------------------
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-------------------------------------------------------------------S------S--S-S
S-----S--SSSS-SSS-SSSSSSSSS-S-SS-SSSS-S-SS-S--S-SSSSSSSSSSSSSSSSSS--SS-SSSSSSS-S
-SSSSSSS--SSSSS-SSSSSSSS-SSSSS-SSSSS-SSSSSSS--SSSSSSSSSSSSSSSSS--SSS-SSSSSSSSS-S
SSSSSSS-S-SSSSSSSSSSSSSSSSS-SSSSSS--SS-SSS-SSSSSSSSS--SSSSS-S-SSSS-SSS-S--SSSS--
-SS-S-S--S-S--------------------------------------------------------------------
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>forward_1281
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-------------------------------------------------------------CATGCATCGGACAGGATCG
A-------------------------------------------------------------------------------
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>reverse_2739
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------------------ATACTCCCTCCGTCCGGAAA------------------------------------------
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