>input_sequence_67957
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-------------------ATGGCGTTGTCACTCATCACCAGATTGCTAACGTGAGAAGCAGCACCCACGTTGCCTTCAA
GCCCTTTAACTAATTCGCAAAATTGATGGCAAAAGTCCATTATA----ATTTGC-----TTTGCTCTTCCATCAAAATAA
TGCCA--ATTCTCTTTGCTCCTGCGCGCAGCCTGGCTCTGGGGTACGCGTACCCGGCGTACGCTTGCTACAAGATGCTGG
AACTGCACCCGCCGCAGATTGAGCAATTGCTTTTCTGGTGCCAGTACTGGT----ATGTGAGCGCATTGGCATCCACATG
TACCGCATTGTTTTCCCGTG-TCATTCTTCTC---------AAGTTTCTGAACCTCTGTTGTGTTGCTGTTGTTGCAGGA
TTCTGATGGCGACGCTGACGGTCGTCGAGAGGTTCGCGGACTGGATAGTGTCGTGGCTGCCGATGTACGGCGAGGCGAAG
CTGCTGCTCGTCCTCTACCTCTGGCACCCCGGCACACGGGTAAGCAGTCGACCAGACACCTCCGGCCCGAGAGATGATCA
ACATT-CAGATACACTTGATTCAGTATGTCTGAATGT--------GGCCAATTCTGAATCTGAAACTTAATGGTGTTCGG
GTTTCAG-------GGTGCAGGGCACGTGTACGATGGCCTCCTCCGTCCGCTGGTGGCGAGGCACGAGCACGACATCGAC
CGGGGCCTGCTGGAGCTGAGGGCCAGGGCGAGGGACGTGACGGCGTCTCAA-------CTCAAGGCGGCGGCTGCCGTCG
CTCAGGCGTGGCTCGTCGAGGCTGCCCGGTGTGTTTCGTCGCAGCTGCAGGCCGCGAGATCAGACCGGGCATGCGCCGCT
CATTGA--------------------------------------------------------------------------
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>chr5D_1_TraesCS5D01G329500
GGGAA---------------------------------------------------------------------------
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----------------------------------------------------------CACTATTTTCCTAATCTAGGCT
CGCTCTCCAAAACAAATTTTTCGCAAATGTGCCAAACCCTGAGGTGGAGG---GGGGGGCACCGCCTCCCTCCTATTTA-
TACTGTTGCAAGTAGCCAC-------------------------------------------------------------
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TCACGGCGCGGGAAATGAAGAAACCGCCACTTAGTTTCTGAAATATGTATTCTCTATTTAACCTTTCGCATTCCTCGTTG
AAGTATAGTTAGTCATTTCTACCTGCAAAAAAAT---GCCAGTCATTTCTGTCCTAATCCTACAGCTTGGCCATTCTGTC
ATGGCGCACCTGGGCACTCATATGCCACCTCAACTGCAAACACGTATGAGTTCAAACCTGAATTTGCTCCAAATTCT---
TCACA---AAAGAAGAAGAATTTGCTCAAAAATTTAAGCCACACGAATGGAGGGGGCTCTGTTTTTGGTGTGAAAATTAG
AAGGGAGGATTCACGCGCCCGTGGCCGTGCTCGTTTTAGCCCATCTATCTATCTGCCGCTTCGGTTGCAACCGCCTCCCC
GGAGCCCAATGGCGCGAAAGGACGGGGCGGTTGGACGCACGCGCATCCATCTCCACCTCCACCTCCAGCGCAACCGCTTC
CCCCCACCCCCGCACATATTCAAACCACGCGCCCCCTTGCCATTGCCCTCTCCCTCCCAGTTCGTCCACGATTCCAATCC
TCCCCGACCTCGAACGAGACCAGCCGCTAATCCACAAGGTAATCGTCACTCCTCGTTTGTTTTGCTGCACATTCGTCCGC
ACCAATCCTCGATTCCAATGCTTGCT-------TGCCTCCTCCGATCAAGCTCTGCACGAACCGCATCCAGATTCCATCG
CCTTTTCTCCCTTGTTCACC--TAAGCTCACTGCGCATCAGATTCATTTGATCAGCATGGTTCATTTCTGGTCGGCGACA
TGAACGGACGATCATTCTCTGTATGTGCATTATCTTTCCC---TCAAGAACGGTAAATCTCTGAACATTGTGCTTTTTTC
GGCTTTGCAGTTAGAGACGATGGCGTTGTCACTCATCACCAGATTGCTAACGTGAGAAGCAGCACCCACGTTGCCTTCAA
GCCCTTTAACTAATTCGCAAAATTGATGGCAAAAGTCCATTATA----ATTTGC-----TTTGCTCTTCCATCAAAATAA
TGCCA--ATTCTCTTTGCTCCTGCGCGCAGCCTGGCTCTGGGGTACGCGTACCCGGCGTACGCTTGCTACAAGATGCTGG
AACTGCACCCGCCGCAGATTGAGCAATTGCTTTTCTGGTGCCAGTACTGGTATGTGAG----CGCATTGGCATCCACATG
TACCGCATTGTTTTCCCGTG-TCATTCTTCTC---------AAGTTTCTGAACCTCTGTTGTGTTGCTGTTGTTGCAGGA
TTCTGATGGCGACGCTGACGGTCGTCGAGAGGTTCGCGGACTGGATAGTGTCGTGGCTGCCGATGTACGGCGAGGCGAAG
CTGCTGCTCGTCCTCTACCTCTGGCACCCCGGCACACGGGTAAGCAGTCGACCAGACACCTCCGGCCCGAGAGATGATCA
ACATT-CAGATACACTTGATTCAGTATGTCTGAATGT--------GGCCAATTCTGAATCTGAAACTTAATGGTGTTCGG
GTTTCAG-------GGTGCAGGGCACGTGTACGATGGCCTCCTCCGTCCGCTGGTGGCGAGGCACGAGCACGACATCGAC
CGGGGCCTGCTGGAGCTGAGGGCCAGGGCGAGGGACGTGACGGCGTCTCAA-------CTCAAGGCGGCGGCTGCCGTCG
CTCAGGCGTGGCTCGTCGAGGCTGCCCGGTGTGTTTCGTCGCAGCTGCAGGCCGCGAGATCAGACCGGGCATGCGCCGCT
CATTGACGAGTAGGTAGCTGCTTGCCAGCCACA--ACTGTC-TGTCGCAGTCGATGTTTATACTCTGAAAAGATGCTGTA
CTTAAGAATACTTGTCGTGGTTTTATTTCAAATTTAAACTAAAACCATGATAAATATTTTGAAATGGAGGGAGTAAAAAT
TATACATGAGTTGCCGCTACAATGCAGGAAACTGTCGATGTTGATAGGCTTTCTCATCCCACGGAGACCTGGCCGCCGTC
AATCTTCTCCAAGCCTCTCACCACCGCTGGACGGCTTCGCCGGACAAGGCCCC-TCAGCGCTAGTGGCAGCGGGGAGGAT
CTTTCCACAGGGGAGTTCAATCAGTGGTGAAACCAGCCTAGAAAATTAGTGGGGTCAA-------TTTTCTGAATTTTTT
CGTCACAATGTACAAAAGTTGTAAAGTGGTTTAGGCAGTTTTT-CTGAAAAGC---------------TGTG-----GGG
TCAGCGGACCCCACGGCCCACACATAGAAACACTACTGAGTTCAATGCGGCGGGGTTGGCCAATTGCGATGCATTGGTGC
TGATAGCGGTGGCGGATGTGCG-TCGCCAGTCGGGGAGCGGTGGCCTTGTGCC-GGCAGTGCCCAAAGGTCTCTGGAGAC
AGGGCCCTAGAAATTTTTTTGAGCAAAAGAGAGGCTTTCCCTCTCCAATTTCATATAAAGGAATCCAGTTCTAGTAGCAT
AATCTCCTTACATGGCGCGCAACGAACTAAGACAACTAGACTAATACAAAGTATCATTACAAGCCAGCTCAACAGGGAGC
AGAATTGAACTAGTTCAGCATCGAAACAAAAGCAAACACAGGAGATAAATGAAGCACAAGCAAGCAAAAGCTGCTGAGAG
AACATCGGGAGTAGGATGGCAATTCATCTTCTCCAGTTTCCCAGCCTCAGCACACCCAGGTGCCATCCTTGCGACGCGCT
GAAGATGTCACTTGCCACCCGTTCTACCACCTTTGCTCCCAGCTGCAAGATTCTTCTCTCTGGGTCCTTGATCTACAAAA
>chr5B_1
TATTCTCGAATTTAAGATTGGCATTCCTTGTTGAACTATAGTTTGTCATTTCTACCCGGGAAAAAAAGAGCTATTTCTGT
CCTAATCTTACAGGTTGGCGATTCTGTCATGGCGCACCTGGGAACTCATATGCCACCTCAACTAGAAACACGTATGAGTT
CAAACCTGAATTTGCTCCAAATTCTTCACAAAAAAAGAAAGAATTTGCAAATTATTGAAACTTGCATTTTGTCATCTCTG
TATGCTCAACAACCATAGCAACACCATGATTCTGCGTAGTACCTTTTTTCTCATAATATTTGAAGACACCTGATCCATGT
AGCTTCACACTAACATGCATGTATGCACTGCTGCCATGTTTTTGAACTGTGTATATCGTTGTCGTTTATATATATGTTGT
TATAGTTTAGTCAAACCAAAAGATTTTCATTTGTACCGTGATCACCAAAGTATTTGGGTGATATTTTTAGGCCATCCCGA
GGAAGGTTTCACTCAACCGAAGCGGGAGGCAGCTGAGATAGTGGTCAATCGAGGAGGTCGAGACGCTCAGGGGGGACATT
CGGACATGTTGGTCAAGCGGCAAGAACATGTAAAGATCGGGTTACAAACGTCACATGTATCTCTTTTTTGAGTCCATCTG
TTTCTACTCCGTGAATTTCGCTACCTTTGTCATGTGCTCTAATCTCAACTCATCGTCATACATTCTGCTCCGTTAACTAA
AAAGAATACGATCCATTAACTAAAAAGGATAAGATTCATCGTCATGTGCATATTGGCCATGCATGTAGGCCTCGAATGTT
CCAACTGAACTGATGTGATTGGATTGATAAAAGAACTTCAAAGGATTCTGCCCAGGCTAGGGGGGGGGTGACCCCCCTAT
ATGCGTGCAGCCCCGCAGCTGGTACCGGAGCCATGACTCCAAGCGGTGTGGACATTTTGCCTCTTCCAAGCTGGAGGAAA
GAATGACGGTCTTCTTCCGGGTGTTCAAGGCCACGCGCAACATCAATAACACCAACCTAGTCAGTCGTCCTTGTGTGTTC
CGGCCCTACCAGGGAATGTCATCTTCTGATTCTCATTTGTCCTTAAATTCATAATCCCACGCATGTAACATACACAAATT
AGCTAGTGTTGATTTGACATTGGGCTTCTTTGTTCGGTGTAGGTCGTCTCTGAACCAGAACATATACAAGCCGACCTTTG
CAGGTTTTGTTGATGCTAACATCGCAAACGGCAAGATATCCCAGAGAAGCTTTGTATGCTACCATTCAACATGTCCTCGT
GCTATACAAGTTCAGAAAGTGTTGTTTCTTACTTTCTACTCTCCATTTTCCTTCGTAGATTGACAGGTCGGTCGTCCAGA
GCTTTGGGGAAGGAGGGAGGACCTGCATCTTCTCTTGGGTCTCTCCGGCGCTTGCCCGCAGTGATGAGGCGCGCATTCAC
ATCTTCAACAACGGAAAAACATACATCAAGGTGTCACAACTTGGAGGGAACACTATTTTCCTAGTCCAAGCCCGCTCACC
AAAACAAATTATTTGCAAATGTGCTCAACTCAGGGGGCGGTGCCCCCTCCTATTTCTATTGTTGCAAGTAGCAACTCACG
TTGCAGGAAATGAAGAAACCATAACTTATTTTCTAAAATATAAATTCTCTCATTTTTTATGGAACTAAAGACCGAATCTT
ACTTAGGCCGTGTAAAAGTAAATCATTCCTGAATTTAAGCTTGGCATTCCTCGTTGAACTATAGTTGGTCATTTCTACCC
GGGAAAAAAGAGCTATTTCTGTCCTAATCTTACAGGTTGGCCATTCTATCATGGCGCACCTGGGAACTCATATGCCACCT
CAACTGCAAACACGTGGAAGGTGGTGTGGGCCCCTTCGGCCTGTGGGTGCTCGCCTCGTCCAAGTTGGAGCCTGGAGGAG
AGAACGTTGGTATTGTTCCGGGTGTTCAAGGTCACGCACAACATTAACTACACCAAGCTGGTGGTGCTTATGTGTTCCGA
CCCCACCAGGTAATGACATCTTTTGATTCTCATTTGTCCCTAAATTCATCATCTCATGCATTTAGCATACACAAATTAGC
TAGCGTTGATTTGACTTTGGCCTTCTTTGCGTACAGTGCATCTCAACCATAACCTGTACAAGCCGACCTATGCAGGTTTT
GTTGATACTGACATCACAAAGGACGAGATATCCCTGTGAAGCCTGGTATGCTACCGACACTCGCCTGCAGCGATGAGACG
TGTATCACGTCTTCAACAATGGAAATGCAGACATGAAGGTGTTGCAACTCAATGGGAACACTATTTTCCTAATCTAGGCT
CACTCTCCAAAACAAATTCTTCGCAAATGTGCCAAACCCTTGGGTGGAGGGGCGGGGGGCACCACCTCCCTCCTATTTTG
TACTGTTGCAAATAGCAAC-------------------------------------------------------------
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TCACGGCGCGGGAAATGAAGAAACCGCCACTTGGTTTCTGAAATATATATTCTATATTTAAGCTTTCGCGTTCCTCGCTG
AAGTATAGTTATTCATTTCTACCCGCAAAAAATAA--GCCAGTCATTTCTATCCTAATCCTACAGCTTGGCCCTTCTGTC
ATGGCGCACCTGGGCACTCATATGCCACCTCAACTGCAAACCCGTATGAGTTGAAACCTGAATTTGCTCCAAATTCT---
TCACAAGAAAAGAAGTAGAATTTGCTCCAAA-TTCAAGCTACACGAATGGAGGGGGCTCTGTTTTTGGTGTGAAAATTAG
-------GATTCACGCGCCCGTGGCCGTGCTCGTTTTAGCCCATCTATCTATCTGCCGCTTCGGTTGCAACCGCCTCCCC
GGAGCCCAATGGCGCGAAACGACGGGGCGGTTGGACGCACGCGCATCCATCTCCACCTCCACCTCCAGCGCAACCGCTTC
CCCCA--CCCCGCACATATTCAAACCACGCCCCCTTC-GCCATTGCCCCCTCCCTTCCAGTTCGTCCACGATTCCAATCC
TCCCCGACCTCGAACGAGGCCCGCCACTAATCCTCAAGGTAATCGCCACTCCTCGTTTGTTTCGCTGCACATTCGTCGAT
CGATAGATG---TTCCAACGTCTGCT-------TGCCTCCTCCGATCAAGCTTG--ACGAATTGCATCCAGATTCCATCG
CCTTCTCTCCCATTG---------AGCTCACTGCACATCAGATTCATTTCGGTCCAAT------------------GACA
TGAATGGACGATCATTCTCTGTCTCTGCATTATCTTTCCC---TCAAGAACGGTAAATCTCTGAACATTGTGATTTTT-C
GGCTTTGCAGTTAGAGACGATGGCGTTGTCACTCATCACCAGATTGCTAACGTGAGTAGCAGCACCCACGTTGCCTTCAA
GCCCTTCAATTAATTCGCAAATTTGATGACAAAAGTCCATTATATATAATTCGC-----TTTGCTCTTCCATCAAAATAA
TACTA--ATTCTCTTTGCTCCTGCGCGCAGCCTGGCTCTAGGTTATGCGTACCCGGCGTACTCTTGCTACAAGATGCTGG
AAGTGCACCCGCCGCAGATCGAGCAATTGCTTTTCTGGTGCCAGTACTGGT----ATACAAGCGCATTGGCATCGACATG
TACCACATTGTTTTTCCGTG-CCATTCTTT---------TGAAGTTTCTGAACCTC-----CGTTGCTGTTGCTGCAGGA
TTCTCGTGGCGACGCTGACGGTCTTTGAGAGGTTCGCGGACTGGATTGTGTCGTGGCTGCCGATGTACGGCGAGGCAAAG
CTGCTGCTCGTCCTCTACCTCTGGCACCCCGGCACGCGGGTAAGCAGTCGACCAGACACCCCGAGCCCGAGAGATGATCA
ACATT-CAGATGCACTTGATTCAGT--------ATGT--------GGCCAATTCTGAATCTGAAGCTTAATGGTGTTCGG
GTTTCAG-------GGTGCGGGGCATGTGTATGATGGCCTCCTCCGTCCGCTGGTGGCGAGGCATGAGCACGACATCGAC
CGGGGCCTGCTGGAGTTGAGGGCCAGGGCGAGGGACGTGACGGCGTCGCAA-------CTCAAGGCGGCGGCTGCCGTCG
GGCAGGAGTGGCTCGTTGAGGCTGCCCGTTGTGTTTCGTCGCAGCTGCAGGCCGCGAGATCAGACCGGCCAGGCGCTGCT
CATTGACGAGTAGGTAGCTGCATGGCAGCCACA--ACACTGTTGTCGCAGTCGATGTTTATACTCGAAAAAGATGCTGTA
TTTAAGAATACTTGTCATGGTTTTATTTCAAAATTAAACTAAAACCATGATAAATATATTGAAACGGAGGGAGTAAAAAT
TATACATGAGTTGCCACTACAATGCAAGAAACAGTTGATGTTGATAGGCTTTCTCATCCCATGGTGATCTGGCC-CCGTC
AATCTTCTCCAAGCCTCTTGCCACCGCCGGAGGGCGTTGCCGGGCAAGGCCCCCTCGGCACTGGTGGGGGTCAAGAGGAT
CTGTCCACGTGGGAGTTCAATCAATGGCGAAGCCAGCCTAGAA-------------------------------------
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>chr5A_4
---AA---------------------------------------------------------------------------
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----------------------------------------------------------CACTATTTTCCTAATCTAGGCT
CGCTCTCCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TCACGGCGCGGAAAATGAAGAAACCGCCACTTAGTTTCTAAAATATATATTCTACATTTAAGCTTTCGCATTCA------
---------TAGTCATTTCTACCCGCAAAAAAAAAAAGCCAGTCATTTCTGTCCTAATCCTACAGCCTGGCCATTCTGTC
ATGGCGCACCTGGGCACTCATATGCCACCTCAACTGCAAACCCGTATGAGTTCAAACCTGAAATTGCTCCAAATTCTTCA
TCACC---AAAAAAAAAGAATTTGCTCCAAA-TTTTAGCTGCACGAATGGAGGGTCTCTG--TTTTGGTGTGAAAATTAG
AAGGGAGGATTCACGCGCCCGTGGCCCTGCTCGTTTTAGCCCATCTATCTATCTGCCGCTTCGGTTGTAACCGCCTCCCC
GGAGCCCAATGGCGCGAAACGACGGGGCGGTTGGACGCACGCGCATCCATCTCCACCTCCACCTCCAGCGCAACCGCTTC
CCCCCACCCT-GCGCATATTCAAACCACGCCCCCTTC-GCCATTGCCCTCTCCCTTCCAGTTCATCCACGATTCCAATCC
TCCCCGACCTCGAACGAGACCAGCCGCTAATCCACAAGGTAATCGTCACTCCTTGTTTGTTTCGCTGCACATTCGTCGGT
CGGTCGATG---TTCCAATGCTTGCTTGCCTAATGCCTCCTCCGATCAAGCTCTGTACGAATCGCATCCAGATTCCATCG
CATTTTCTCCCATTGTTCACTTTAAGCTCACTGCGCATCAGATTCATTTGATCAGCATGGTTCATTTCTGTTCGGCGACA
TGAATGGACGATCATTCTCTGTCTCTGCATTATCTTTCCCTCATCAAGAACGGTAAATCTCTGAACATTGCGATTTCT-C
GGCTTTGCAGTTAGAGACGATGGCGTTATCACTCATCACCAGATTGCTAACGTGAGTAGCAGCACCCACGTTGCCTTCAA
GCCCTTCAATTAATTCGCAAAATTGATGGCAAAAGTCCATTATA----ATTCGCTTTAATTTGCTCTTCCATCAAAATAA
TACAGTGATTCTCTTTGGTCTTGCGCGCAGCCTGGCTCTGGGTTACGCGTACCCGGCGTACGCTTGCTACAAGATGCTGG
AAGTGCACCCTCCGCAGATCGAGCAATTGCTTTTCTGGTGCCAGTACTGGTATGTATATAAGCACATTGGCATCGACATG
TACTGCATTGTTTTTCAGTG-TCATTCTTCTC--------------TCTGAATCTC-----TGTTGCTGTCGCTGCAGGA
TTCTCGTGGCGACGCTGACAGTCGTCGAGAGGTTCGCGGACTGGATAGTGTCATGGCTGCCAATGTACGGCGAGGTGAAG
CTGCTGCTCGTCCTCTACCTCTGGCACCCCGGCACACGGGTAAGCAGTCGACCAGACACCCGGAGCCTGAGAGATGATCA
ACATT-CAGATACACTTGATTCGGT--------ATGTCTGTATGTGGCCAATTCTGAATCTGAAACTTACTGGTGTTCGG
GTTTCAG-------GGTGCGGGGCACGTGTACGATGGCCTCCTCCGTCCGCTGGTGGCGAGGCACGAGCACGACATCGAC
CGGGGCCTGCTGGAGCTGAGGGCCAGGGCGAGGGACATGACGGCGTCGCAA-------CTCAAGGTGGCGGTTGCCGTCG
GACAGGCGTGGCTCGTCGAGGCTGCCCGGTGTGTTTCGTCGCAGCTGCAGGCCGCGAGATCAGACCGGGCAGGCGCTGCT
CATTGACGAGTAGGTAGCTGCTCACCAGCCACAACACTGTC-TGTCGTAGTCGATGTTTATACTCTAGAAAGATGCTGTA
CTTAAGAATACCTGTTACGGTTTTATTTCAAATTTAAACTAAAACCATGATAGATATTTTGAAACGGAGAGAGTAAAAAT
TATACATGAGTTGCCGCTACAATGCAAC---CTGTTGATGTTGATAGGCTTTCTCATCCCACGGAGACCTGGCCGCCGTC
AATCATCTCCAAGCCTCTCACCACCGCCGGAGGGCGTCGCCGGACAAGGCCCCCTCGGCGCTGGTGGCAGCGGGGAGGAT
CTTTCCATAGGGGAGTTCAATCAGTGGCGAAGTCAGCCTAGAAAATCAGTGGGGTCATTGCTAATTTTCTGAATTTTTTT
CATCACAATGTACAATAATTGTACATTGTTTTAGGCAGTTTTTTCTGAAAAGCTGTGGTGTGGTGTGGTGTGGTGTGGGG
TCAGCT--------------------GAAACGCCACTGAGTTCAATGCAGCGGGGTTGGCCAATTGCGCTGGATTGGGGC
TGGTGGCAGTGACGGATGTCCGTTCGCCGGTCGGGGGGCGGCGGCCATGGGCC-GCAGTGCCC---AGGTCTCTGGAGAC
AGGGCCCTA-----------------------------------------------------------------------
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>chr4A_1263
TGT-----------------------------------------------------------------------------
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------------------------------------------------------------AGCACATTGGCACCGACATG
TACCGCGTTGTTTTTCTGTG-TG-TTCTTCTATAGAATCTGAAGTTTTTGAACCTC-----TGTTGGTAATGTTGCAGGG
TTCTGGTGGCGATGTTGACGGTCGTTGAGAGGTTCGTGGACTGGATGGTGTCGTGGCTGCTGATGTATGGAGAGGCGAAG
CTGATGCTCGTCCTCTATCTCCGGCACCCTAGCACACGGGTAAGCAGTCGACCAGACACCCCGAGCCCGAGAGATGATCA
ACATT-TAGATACACTTGATTCGGT--------ATGT--------GGCCAATTCTGAATCTGAATCTTAATGGTGTTCGG
GTTTCAG-------GGTGCGAGGCACGTGTACAATGGCTTCCTCCGTCCGCTGTTGGCGAGGCACGAGGACAACATCGAC
CGACGCCTGCTGGAGCTGAGGGCCAGGGTGAGGGACGTGACGCCGTCACAA-------C-------AGCGGCTGTCGTCG
GTTAGGTGTGGCTCTTCGAGGCTGCCCAGTGTGTTTTGTCGCAGCTGCAGGTCGCGAGATCAGTTCGGGCAGGCCCCGCA
CATTGACGAGT---------------------------------------------------------------------
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>chr4B_1263
TGT-----------------------------------------------------------------------------
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------------------------------------------------------------AGCACATTGGCACCGACATG
TACCGAGTTGTTTTTCTGTGTTG-TTCTTCTATAGAATCTGAAGTTTTTGAACCTC-----TGTTGGTAATGTTGCAGGC
TTCTGGTGGTGATGCTGACGGTCGTCGAGAGGTTCATGGACCGGATGGTGTCGTGGCTGCCGATGTATGGAGAGGCGAAG
CTGATGCTCGTACTCTATCTCCGGCACCCCAGCACATGGGTAAGCAGTCAACCAGACACCCCGAGCCCGAGAGATGATCA
ACATT-TAGATACACGTGATTCGGT--------ATGT--------GGCCAATTCTAAATCTGAATCTTAATGGTGTTCGG
GTTTCAG-------GGTGCGAGGCACGTGTACGATGGCTTCCTCCGTCCGCTGGTGGCGAGGCACGAGGACAACATCGAC
CGATGCCTGCTGGAGCTGAGGGCCAGGGTGAGGGACGTGACGCCGTCACAA-------C-------GGCGGCTGTCGTCG
GTTAGGTGTGGCTCGTCGAGGCTGCCTAGTGTGTTTCGTCGCAGCTGTAGGCCGCGAGATCAGTTCGGGCAGGCACCGCA
CATTGACGAGT---------------------------------------------------------------------
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>chr7A_1263
TGT-----------------------------------------------------------------------------
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------------------------------------------------------------AGCACATTGGCACCGACATG
TACCGCGTTGTTTTTCTGTG-TG-TTCTTCTATAGAATCTGAAGTTTTTGAACCTC-----TATTGGTAATGTTGTAGGG
TTCTGGTGGCGATGTTGACGGTCGTCGAGAGGTTCGTGGACCGGATGGTGTTGTGGCTGCTGATGTATGGAGAGGCGAAG
CTGATGCTCGTCCTCTATCTCCGGCACCCCAGCACACGGGTAAGCAGTCGACCAGACACCCCGAGCCCGAGAGATGATCA
ACATT-TAGATACACTTGATTCAGT--------ATGT--------GGCCAATTCTGAATCTGAATCTTAATGGTGTTCGG
GTTTCAG-------GGTGCGAGGCACGTGTACGATGGCTTCCTCCGTCTGCTGTTGGCGAGGCACGAGGACAACATCAAC
CGATGCCTGCTGGAGCTGAGGGCCAGGGTGAGGGACGTGACACCGTCACAA-------C-------GGCGGCTGTCGTCG
GTTAGGTGTGGCTCGTCGAGGCTGCCCAGTGTGTTTCGTCGCAGCTGCAGGTCGCGAGATCAGTTCGGGCAGGCACCGCA
CATTGATGAGT---------------------------------------------------------------------
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>chr5D_1271
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----------------------------------------------------------------CATTGGCATCTACATG
TACCGCATTGTTTTTTCGTG-CCATTCTTCTGAAGA-TCTGAAGTTTCTGAACCTT-----TGTTTGTAATGTTGCAGGG
TTCTGGTAGCGACGATGACGGTCGTCGAGAGGTTCGTGGACTGGACGGTGCCGTGGCTGCCGATGTACAGAGAAGCGAAG
CTGCTGCTCGTTCTCTACCTCTGTCACCCCAGCACACGGGTAAGCAGTCGACCAGACACCCCGAGCCCGAGAGATGATCA
ACATT-CAGATATACTTGATTCGAT--------ATGT--------GGCCAATTCTGAATCTGAATCTTAATGATGTTTGG
GTTTCAGAGTGCGGGGAGCGGGGCACATGTACGATGGCTTCCTCCGTCCGCTGGTGGCGAGGCACAAGGACGACATCGAC
CGGTCCAGT-TGGAGCTGAGGGCCAGAGCGAGGGACGTGACTGCGTCGCAACTCAAGGC-------GGCGGCTGCCGTCA
GTCAGGTGTGGCTCTTCGAGGCTATCCAATGTGTCTCGTCGCAGCTGTAGGCCGCGAGATCAGGCCGGGCAGGCGCCGCA
CATTGACGAGTGGT------------------------------------------------------------------
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>chr6D_1277
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----------------------------------------------------------------------CATCGACATG
CACCGCATTATTTTTCCGTG-TCATTCTTCTGAAGAATCTGAAGTTTCTGAACCTC-----TGTTGGTAATGCTGCAGGG
TTTTGGTGGCGATGCCGACGGTCGTCGAGAGGTTCATGGACTGGGCGGTGTTGTGGATGCCGATGTACGGAGAGGCGAAG
CTGCTGCTTGCCATCTACCTCTGGCACCCCAGCACACGGGTAAGCAGTCGATCAGACACCCCGAGCACGAGAGATGATCA
ACATTTCAGATAGACTTGATTCGGT--------ATGT--------GGCCAATTCTAAATCTAAATCTTAATGGTGTTCGG
ATTTCAG-------GGTGCGGGGCACGTGTACGATGGCTTCCTCCGTCCGCTGGTGGCGTGGCACGAGGACGACATCGAC
CGGGGCCTGCTTGACCTAAGGGCTAGGGCGAGGGACGTGACGGCGTCACAACTCAAGGC-------GGCGACTGCCATCG
GTCAAGTGTGGCTCATCGAGGCTGCTCGCTGTGTTTCGTCGCAGCTGCAGGCCGCGAGATCAGGTCGGGAAGGCGCCGCG
CATTGACGAGT---------------------------------------------------------------------
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>chr2A_1277
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----------------------------------------------------------------------CATCGACATG
CACCGCATTATTTTTCCGTG-TCATTCTTCTG---------AAGTTTCTGAACCAC-----TGTTGGTAATACTGCAGGG
TTCTAGTGGCGATGCCGACGGTCGTCGAGAGGTTCGTGGACTGGACGGTGTCGTGTCTGCCGATGTACGGAGAGGCGAAG
CTACTGCTCATCATCTACCTCTGGTAGCCCAGCACACGGGTAAGCAGTCGGTCAGACAACCCGAGCCCGAGAGATGATCC
ACATTTCAGATAGACCTGATTCGTT--------ATGT--------GGCCAATTCTGAATCTGAATCTTAATGGTCTTCGG
ATTTCAG-------GGTGCGGGGCACATGTACGATGGCTTCCTCCATCCGCTGGTGTCGTGGCACGAGGCTGACATCGAC
CGGGGCCTACTTGAGCTGAGGGCTAGTGCGAGGGACGTGACGGCGTCACAACTCAAGGC-------GGCGGCTGCCATCG
GTCAAGTGTGGCTCGTCAAGGCTGCCCGCTATGTTTCGTCGCAGCTGCAGGCCGCGAGATCAGGCCGGGAAGGCGCCACA
CATTGAGGAGT---------------------------------------------------------------------
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>chr4D_1278
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-----------------------------------------------------------------------ATCGACATG
CACCGCATTATTTTTCCGTG-TCATTCTTCTGAAGAATCTGAAGTTTCTGAACCTC-----TGTTGGTAATGTTGCAGGG
TTCTGGTGGCGATGCCGATTGTCGTCGAGAGGTTCGTGGACTGGACGGTGTCGTGGCTGCCGATGTACGGAGAGGCGAAG
CTGCTGCTCGTCATCTACCTCTGGCACCCCAGCACACGGGTAAGCAGTCGATCAGACACCCCGAGCCCGAGAGATAATCA
ACATTTCAGATAGACTTGATTCGGT--------ATGT--------GGCCAATTCTGAATCTGAATCTTAATGGTGTTCGG
ATTTTAG-------GGTGCGGGGCACGTGTACGGTAGCTTCCTCCATCCGCTGGTGGCGTGGCACGAGGCCGACGTCGAC
CGGGGCCTGCTTGAGCTGAGGGCTAGGGCGAGGGACGTGACGGCGTCACAACTCAAGGC-------GGCGGCTGCCATCG
GTCAAGTGTGGCTCGTCGAGGCTGCCCGCTGTGTTTCGTCGCAGCTGCAGGCCGCGAGATCATGCCGGGAAGGCGCCACG
CATTGATGAGT---------------------------------------------------------------------
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>chr2D_1278
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-----------------------------------------------------------------------ATCGACATG
CACCGCATTATATTTTCGTG-TCATTCTTCTGAAGAATCTGAAGTTTCTGAACCTC-----TGTTGGTAATGCTGCAGGG
TTCTGGTGGCGATGCCGACGGTCGTCGAGAGGTTCGTGGACTGGACGGTGTCGTGGCTGCCGATGTACGAAGAGGCGAAG
CTGCTGCTCGTCATCTACCTCTGGCACCCCAGCACACGGGTAAGCAGTCGATCAGGCACCCCGAGCCTGAGAGATGATCA
ACATTTCAGATAGACTTGATTCGGT--------ATGT--------GGCCAATTCTGAATCTGAATCTTAATGGTGTTCGG
ATTTCAG-------GGTGCGGGGCACGTGTACGATGGCTTCCTCCATCCGCTGGTGGCGTGGCACGAGGCCGACATCGAC
CGGGGCCTGCTTGAGCTGAGGGCGAGGGCGAAGGACGTGACGGCGTCACAACTCAAGGC-------GGCGGCTGTCATCG
GTCAAGTGTGGCTCGGCGAGGCTGCCCGCTGTGTTTCGTCGCAGCTGCAGGCCGCGAGATCAGGCCGGGAAGGTGCCACG
CATTGACGAGT---------------------------------------------------------------------
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>chr5B_2043
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------------------------------------------------------------------------CCGCTGTC
AATCTTCTCCAAGCCTTTCGCCACCGCTGGAGGGCTTCACCGAGCAAGGCCCCCTCGACGCTGGTGGCAGCGGGGAGGAT
CTGTCCACAAGGGAGTTCAATCAGTTGCGAAGCCAACCTAGAAAATCAGTGGGGTCATTGCTAATTTTTTTAATTTTTTT
CATCACAATGTACAATAATTGCACAGTGTTTTAGGCAGTTTTT-CTGAAAGGC---------------TGTGGTGTGGGG
TCAGCTGACCCCACAATCAACACATAGAAACACCACTGAGTTCAATGCAATGGGGTTGGCCAATTACTCTGGATTGGGGC
TAGTGGTGGTGACGGATGTATGTTCGTCGGTCCGGGGGCGGCGGCCCTAGGTCGGCAGTGCCC---AGGTCTCTAGAGAC
AGGGCCCTAGAATTTTTTTTGAGAAAAAGAGAGGCTTTCCCTCTCCGATTTCATATAAAGGAATCGAGTTCTAGTACCAT
AATCTCCTTACATGACGCGCAACAAACTAAGACAACTAGACTGATACAAACTATCATTACAAGACAGCTCAACAGGGAGC
AAAATTGAACTAGTTCAACATTGAAACAACAACAAACACAGGAGATAAACGAAGCGCAAGCAAGCAAAAGCTGC-GAGAG
AACATTGGGAGTAGGACGGCAGTGCATCTTCTCCAGTTTCCCAGCCTCAGCACACCCAAGTGCCATCCTTGCGACGCTCT
GAAGATGTCACTTGCCACCCGTTCTACCACCTTTGCTCCCAGCTGCAAGATTCTTATCTTTGGGTCCTTGATCTGCAAAA
>SNPs
S-S-----------------------------------------------------------------------------
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------------------S---------------------SS---------------------S--------------S-
-----------S----S---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------S------S-------S---------------S--
-----------------------S---------S----------------------------------------------
-----------------------------------------S--------------------------------------
---------------------------S---S-------S----------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
------------------------------S---SSSS-----------------S------------------------
--------------------------------------------------------------S--------------S-S
SSSS-SSSSSSS-------------------------------------------S-----S------------------
-----------S-SS-SSS---------------------------------------------------S---------
----S-----------------S-S-----------------------------------------------S-----S-
--------------------------------------------------------S-----------------------
------S--S-----------------------------------------S----------------------------
-S-S--------------------------------------S-------------------------------------
--S----------------S-----------------------------------SSS----------------S-----
--------------S-----------------------------------------SSSSS-------------------
-----S--------------------------------------------------------------------------
------------------------------------------------------------S-SS----------------
-------------------------SSSSSSSS-----------------------------------------------
-------------------S------------------------------------------------------------
-----------------------------------------------S--------------------------------
S----------------------------------------------------------------------S--------
------------------------------------------------------------------S-------------
----------------S-----------------------------------------------S---------------
--------------------------S--------S--------------------------------------------
-------------------------------S------------------------S-----S-----------------
---------------------------S---S--------------S----------S-----------S-S-S------
-S-------------S-S-----S----S---------------------------------------------------
-----S--------SSS-S--------------S--------------S-------------------S--S-----S--
--S-S------S-------S--------S-------S----S----S--S-----SSSSSS--SSS--------------
------------S----------S----------------------S------------------S----------S---
--------------S--------S------------------S-------S------------S----------------
-S---------------S---S-------S-S-----------------S-----S------------------S-----
-----S----------S----S-S----------------------------------S------------------S--
-------------------------------------------------------S---S--------------S-----
>forward_3287
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-------------------------------------------------------------------CACATTCGTCCGC
ACCAATC-------------------------------------------------------------------------
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>reverse_5019
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----------------------------------------------------------GTGCCCAAAGGTCTCTGGAG--
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--------------------------------------------------------------------------------
