>input_sequence_67949
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------------------------------ATGTTATTGCTGTTGGCCCTGCTGCTGCTATGTAA---CAATG---GAAT
CGGTGACGTTGAAGGCTCAACGATCCATG---ATAGT---AGCATCGTCGATCTGCATGCGCTGCTCGATTTCAAGCTGG
GTATCACCGACGATCCACGAGGAGCATTAAGCAACTGGAGCAACAACACCCACTTCTGTCGGTGGAATGGTGTAAACTGC
ACCACGACACCACCGTTTCGTGTTAGGGTGCTTAACCTCTCCGGCCTGAACATAACAGGCAAAATTAGGTCCTCTCTGGG
AAACATGACCTTCCTTGCATGGCTCGACCTTTCATCTAATAACTTTGTTGGCCCCATACTTACCCTTGACCGTCTCCAAC
AACTAGACACACTTTACCTGTACGACAACCATCTACATGGGACGATTCCTGATTCACTTACCAACTGTTCCAGCTTGGCC
------------------------CTAGTGGGTGTAATTCCTCCGAAACTACACTTTCTTTCACATCTTTTCTACTTTAA
CCTCTCATTAAACTCCATAGTTGGTCAAATCCCTCCGAAACTAGGATTTCTTTCAGATCTGACCGTCTTAGATCTCTCAG
TAAACTCGCTAGTGGGTCAAATTCCTCCCAAACTAGGCCTCCTTTCAAATCTGATCTACTTGGATCTCTCC-ATAAA-CT
TGCTAGTGGGTCAAATTCCTCCAAGTTTAGGCTTTCTTCCAAATCTAGCATATATCCATCTTCGATCAAATCAACTTGAG
GGAAGCATTCCTCGCGAGCTTGGGCAATTGCTTGAACTAAAAGAGTTGTTCCTGAGCGATAATAAGCTTTCAGGTGAACT
AGTATAG-------------------------------------------------------------------------
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-----------------------------------------------
>chr4A_1_TraesCS4A01G489900
TCCTTTGAACAAGTCTTGAAATGCCGACACTTAGATGGTGTCCACACAAATTCCAGTAGCTATCTCTGTCCATCATAGTC
GGTACTATCTTAGATATGAAG-----------------AAGACTATAGGTAGCCCGTATCCACTCATCCCCTCGTCACAA
A-GGAAATGAAGCATTGTTACCCCCAATTATATATCAACCAACAACCCAGGTG---------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CT
AAGAGTGAGCTAACATATTTTATTGACCTATAAACCGCAGCAGATTCATATCGTGTGGCCGCCTGTTTGTCTCATGATGT
TTTATCTATGAT---------------------------------ATGCATATTGCTCAAATTTTTAAAAAGTTGAATGG
TAGTGTTTGTGAGTGGAATCTATAGAAAACAGGACAATGGGACTAATAACCGTTAAATCTCTAATCATAGACCAGTAAAC
GGATCCACATGGTGATGTTGGTCAGTAAGGGAACCTCTTGAGATGAGCGGCACATCAACTAATTGGAAGATCTTTGTCGG
GTCCCGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------AAGAAAAGTATATAGCGGGACAATCGGTAGACATGTGGGATTCCAGACCATACATGTCGCAACAACCT
TGTCCAGCTCAAACAGCGACG----------------AGCAGTGAAAAGTAGTGGTTGGTGGAAAGTTTGAGGGATGAGA
TG------------------------------------------------------------------------------
---------GA------CGGATGCGAGCGTGTGGATGTCAGGCTGCTGCAAATGTGCTTTTAAACCATGCTTGGGGAACT
GGCTCACCCATCTGAGCATCATCTAAC-----ACTCACTCAGCCTCCACACAGCTCGCGC------CAGGCAAAACCAGG
CAGAAGCGGG----------------------------------AGAGGTGCACATAATTCTT--TCTCCTTGATCGTGT
CTTCTGGCTT----GTGTACAT--------CTTGTTGCC-----------------------------------------
------AGACT-----------TGTAAACATTTGCAAAAGCTGCTCCGTATAGCT--GCTTCTTTTTTT-----------
------------------------------------TTACAGCATGGGCCTAAC--------GT----TACAATACATGC
AGTTCATATCATGC-----CACCATGTTTACGATTTACATTTTGCAGGTGACG--------GGTGTTGCCTCGTGTCGTG
TGTTCTCCCGAGC---------AGCCGGCCATGTTATTGCTGTTGGCCCTGCTGCTGCTATGTAA---CAATG---GAAT
CGGTGACGTTGAAGGCTCAACGATCCATG---ATAGT---AGCATCGTCGATCTGCATGCGCTGCTCGATTTCAAGCTGG
GTATCACCGACGATCCACGAGGAGCATTAAGCAACTGGAGCAACAACACCCACTTCTGTCGGTGGAATGGTGTAAACTGC
ACCACGACACCACCGTTTCGTGTTAGGGTGCTTAACCTCTCCGGCCTGAACATAACAGGCAAAATTAGGTCCTCTCTGGG
AAACATGACCTTCCTTGCATGGCTCGACCTTTCATCTAATAACTTTGTTGGCCCCATACTTACCCTTGACCGTCTCCAAC
AACTAGACACACTTTACCTGTACGACAACCATCTACATGGGACGATTCCTGATTCACTTACCAACTGTTCCAGCTTGGCC
------------------------CTAGTGGGTGTAATTCCTCCGAAACTACACTTTCTTTCACATCTTTTCTACTTTAA
CCTCTCATTAAACTCCATAGTTGGTCAAATCCCTCCGAAACTAGGATTTCTTTCAGATCTGACCGTCTTAGATCTCTCAG
TAAACTCGCTAGTGGGTCAAATTCCTCCCAAACTAGGCCTCCTTTCAAATCTGATCTACTTGGATCTCTCC-ATAAA-CT
TGCTAGTGGGTCAAATTCCTCCAAGTTTAGGCTTTCTTCCAAATCTAGCATATATCCATCTTCGATCAAATCAACTTGAG
GGAAGCATTCCTCGCGAGCTTGGGCAATTGCTTGAACTAAAAGAGTTGTTCCTGAGCGATAATAAGCTTTCAGGTGAACT
AGTATAGTGGATTGGCGCAGGAGCAATTTATACCAAATTATACATACATGTATTTAAAATAATCCTTTCTTTAACCTCAC
TATAGATAAATAATGTTACCTTGCTACTTCTGTTATATTTGGATGGATAAAATTGAACGCTAGTTTAAGCAACTATATAA
ATTGCTGGGAGAAACACTTGGGGCCTGTTTGGTCGACGTACTAAACTTGCCATGTTAGAATAATTCAAATCGCACGTCAA
TCTTCCAAGGGCAAGCAATCACACAGCACAATCACGACACCAACATGACTATATCCCCGGGGCACAATTACGGGCACACT
TTCCCATGTACCAAATCACATGATACAATCGACGATACAGGGCCATCAGAGAGCGTTTCGATAGCTGGCCACTGCCGACC
CGGCCAGACATCCCTGCCATGTGCGCCTGGGCCGTCCCTATCGTAATCTCTGTCGTAACCTACAACTTATGTCTAGTTTA
TTTGTCTACCTCGGTGTGTGTTTATATAATAGGTCCAAATTACACGCGTCTGACTCAAACAACAAACCCACCACTATTTA
CAGGTCCAATTATAGCACAACTCTTACACACAATATTCGACACATATATTAACACTCCACCTTGGCGTATATGACCTCGC
CATCTTGAAGCTATCATGCGCTGATCTCGGTGAACTTGGACTTGAAACATTAAATATGAGATCCGTTGCTACTTTTTGAC
ATCACATGAGTCCACCTGCAAATGTAGTCCCTTTTCCTTTCTTTATGATAGCCAATCTCCCATGAAAATTAAGTTCTTCT
ACTCTTGTGTTTTGTTCCCAATCCCTCGGAGTATCAGTCCAACACATCGCACAAAGACAACAAAGTCACCATATCCTACG
ACACCATAGTATCGTCATCATGGTAGCTTTTTTCATGATATGCGTGACAGTGAACAACTCACATATTTATGTCACATATA
ATATTTCTGAACACACCCCGATATTGTTGACTGTATGCCTGAACTTG
>chr4A_3
--CTTTGAACAAGTCTTGAAATGCCGACACTTGGACGGTGTCCACAAAAATTCCAGTAGCTGTCT-TGTCCATCATAGTC
TTGGACGGCATCCTTTTCGGAAAAAAATCTCGGCTATAAAGACTCTAGGTAGCCCGTAGCCACTCATCCACTCTTCACAA
TGGGAAAGGAAACATTGTTACACCCAATTATA----AACCCACAACCCAGATGCTAAGGGGATGTTTGGTTCAGAAGTCC
TAGGACTTTTTCTAGTCCCAGGAACTAATCAAAAAATACTCTCTAGTAGAGTCTTTTTTTAGTCCATGTAGAAAAAGTCC
CTCCCGTTTGGTTCCTAGGGACATTTTATGGACTTTTTCTAGTCTCTGAGACTAAAAAGTCCCTGAACCAAACACCCCCT
AAGAGTGAGCTAACATACTTTATATTGAACTAAACCGCAGCTGGTTCATATCGTCT-------TGTTTGTTTCAGGATGG
TTTGTCTATTACAGCCTTGGTTTTATTCGATGGTTGATATTTCACATGTATATTGCTCAAATTTTAAAAAA-TTGAATGG
TGCTTGACAC----------------------------------------------------------------------
-------------------------------------------------------------------AAATTTCTGTGTG
TCTCAAAACACAGTTCGATTGCAGTGCTTTTGTTCCGGTAGGACGCAGCCCTAGCGTGAAGAAACTTCTCAATGACATTC
TCTATGGAATTGGCAAGAAAATGTACCCTGGTTTGGATGAAAGGTAGCTGATTGATGAAATCCGAGCATTACTTGAGAAA
AAGAGGTACACACCCTATTATTTAATTTCATATATAGTTCAAGTAGTAAATGGGGAGTTGGATGAAAGGCAGCTGATTGA
TGAACTATGAGATAAAGAGGTATGCATCTATTATGTAGTTTCATACTATACATCAAATAGTAAATGGGGGCAAAGATAGC
GTCACACCTGCGGAAAAATGAGTGACAAATTATGTTTGAGACATCTCTTATAGATGGGTTCGGATGGACTATTGTCATTC
TTGTATATTTCCAAAAACTGTATATAGAGGGACAATCTGTAGACCTGTGGGATTCCAGACCATACATGTCGCAACAACCT
TGTCCAGCTCAAACAGTGACG----------------AGCGGTGAAAAGTAGTTTTTAAACCACTGGGAACC--------
---------------------------AATTCAGATGAGATGGATGAGATGAGATGAGATGAACTCCAAGGGCAATGTGT
TTGAGATGAGA------CGGATGCAAGCGTGTGGACGTGAGGCTTCAGTAAATGTGTTTTTAAACCA----CTGGGAACC
AATTCAGCCAGCTGAGCATCATCCAATTA---ATTCACTCAACCTCCACA--GCTCGCGC------CCGGCAAAACCAAG
CAGAAACGGG----------------------------------AGAGGTGCACAT-ATTCTG--TCTCCTTGATCGTAT
CTTCTGGCTT----GTGTACGTACGTACGTCTTGTTGTC-----------------------------------------
------ATACT-----------TGTAATA--TTTGAAAAGCTGCTCCGTATAGCT--ATTTTTTTTCTT-----------
------------------------------------TTACAGCATGAGCCTAAC--------GC----TATTGTACATGC
GGCTCATAGCATGC-----AACCATGCTTACGGTTCAAATTTTGCAGGCGACG--------GGTGCTGCCTCA-----TG
CGTTCTCCCGAGC---------AACCGGCCATGCTCTTACTGTTGACATTGCTGCTTCTCTGCAA---CAACA---GAGT
CCGCATTGTCCATGGCTCAACGATCCATG---AGAATAGCAGCGTCGTCGATCTGCACGCGCTGCTCGACTTCAAGCAAG
GCATCACCGACGATCCACGAGGGGCCTTGAGCAGCTGGAGCAACACCACCCACTTCTGTCGATGGCGTGGTGAAAAGTGC
ACCACAACACGTCCATTTCGCGTCTCACGGCTTGTCCTCGCCGGCCTGGATTTAGCAAGACAAATCACCTCCTCTCTTGG
AAACATGACCTTCCTTCGGGCGCTAGACCTTTCATCTAATAACTTGGTTGGCCCCATACCTATCCTTGGCCATCTCCAAC
ATCTGCACACACTTTACCTGTACGACAACCATCTGCATGGCACAATTCCTGATTCGCTTACCAACTGTTCCATCCTGGCC
AACTTAGATCTCTCTGTAAATTTGTTAGTGGGTCAAATTCCTCCAGACCTATACTTTCCTTCACATTTTTCATACCTAAA
CCTCTCAGAAAACTCCATAGTGGGTCCAATCCCTACGGAACTAGGTTTCCTTTCAAATCTGACTGTCTTAGATCTCTCTA
CAAACTTCCTTGTGGGTCAAATTCCACGAACACTAGGCCTCCTTTCAAATTTGATCTACTTGGATCTCTCCAA-AAA-CA
TACTAGTGGGTCGAATTCCTCCGAGTTTAGGCTTTCTTCCAAATCTAGCATATATCTATCTTCGATCAAATCAACTGGAG
GGGAGCATTCCTGATGAGCTTGGGCAATTGCAGGAATTAAAAGAGCTGATCCTGGGCAGTAACAAGCTTTCAGGTG----
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>chr4A_336
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-----------AGTGGAATCCATAGAAAACAGGACAACTGGACTAATAACCGTTGAATCTCGAATAATAGACCAGTAAAC
GGCTCCACATGGTGATGTTCATCACTAGCAAAACCTCGTGAGATAGGCGGCACATCAACTAATTAGAATATCTTTGTCTG
GTCCCGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------AAGAAAAGTAAGTATA-----------TAGACCTGTGGGATTCCAGACCATACATGTCGCAACAACCT
AGTCCAGCTCAAACAGCGACG----------------AGCAGTGAAAAGTAGTGGTTAATGGAAAGTTTGACAAATTCCA
GGAGTCCAGGTCAAGATCAAGCTAA-TGAAGATA-----AGGCTCGAGAA-----------------------------T
TTGAGATGAGAATGAGATGGATGCAAGTGTGTGGATGTGAGGCTGCTGTAAATGTGTTTTTAAACCA----TGGGGAACT
GGCTCACCCATCTGAGCATCATCCAAC-----ACTCACTCAGCCTCCACA--GCTCGCGC------CCAGCAAAACGAGG
CAGAAACAGG----------------------------------AGAGGTGAACATAATTCTGTCTCTCCCTGATCATGT
CTTTTT-CTT----GTGTATAT--------ATTGTTGTC-----------------------------------------
------AGACT-----------TGCAAACATTTGAAAAGCTGCCCTGGATTCGTATAGCTGTTTTTGTT-----------
------------------------------------TTACAGCATGAGCCTAAC--------GC----TACTATACAGGC
GGTTCATATCAGGC-----CACCAAGTTTACACTTTACATTTTGCAGGCAACGGGTGTTGCGGTGTTGCCTCA-----TG
CGTTATCCAGAGG---------AGCCGGGCATGCTATTGCTGTTGGCACTGCTGCTTCTCTGTAA---CAACG---GAGT
CGGTGACGTTGAAGGCTCAACGATCCACGAGAATAGC---AGCATTGTTGATCTGCACGCGCTGCTCGACTTCAAGCAAG
GCATCACCGACGATCCACAAGGGGCCTTGAGCAGCTGGAGCAACAACACCCACTTCTGTCGATGGCGTGGTGTAAACTGC
ACCACGACACCACCGCGTCGCGTCTCATGGCTTGTCCTCACCGGCCTGGATTTAGCAGGACAAATCACCTCCTCTCTTGG
AAACATGACATTCCTTCGATCGCTCGACCTTTCATCTAATAACTTGGTTGGCCCCATACCTATCCTTGGCCATCTCCAAC
AACTGGAGACACTTTACCTGTACGACAACCATCTGCACGGGACAATTCCTGATTCAATCACCAACTGTTCCAGCTTGGCC
AACCTAGATCTCTCTATAAATTCTCTAGTGGGTGTAATTCCTCCGAAACTAGACTTTCTTTCACATCTTTTCTACCTAAA
CCTCTCTGGAAACTCCATAGCGGGTCCAATCCCTCCGGAACTAGGTTTCCTCTCAAATCTGTCCGTCTTAGATCTATCTG
AAAACTTGCTAGTGGGTGAAATTCATCCGAAACTAGGTCTCCTTTCAGATCTGATCCTCTTGGATCTCTCC-ACAAA-CT
TGCTAGTGGACCGAATTCCTCCGAGTTTAGGCTTTCTTCCAAATCTAGAATATCTATATCTTCGATCAAATCAACTCGAG
GGGAGCATTCCTGATGAGCTTGGGCAATTGCAGGTTTTAAAAGAGCTGATCCTGGGCAGTAACAAGCTTTCAGGTAAA--
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>chr7D_337
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------------GTGGAATCCATAGAAAACAGGACAATGAAACTAATAACCATTAAATGTCGAATCATAGACCAGTAAAC
AGCTACACATGGTGATGTTTGTCAGTAACAAAACCTCTTGAGATAGGTGGCACATCGACTACTTAGAAGATCTTTGTCGG
GTCCCAG-------------------------------------------------------------------------
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------------AAGAAAAGTATATTGCGGGACAATCGGTAGACCTGTGGGATTCCAAACCATACATGTCGCAACAACCT
TGTCCAGTTCAAACAGCGACG----------------AGCAGTGAAAAGTAGGGATTAGTGGAAAGTTCGACGGATGAGA
TG------------------------------------------------------------------------------
---------GA------TGGATGCGAGCGTGTGGATGTCAGGCAGCTGTAAATGTGCTTTTAAACCATGCTTGGGGAACT
GGCTCACCCATCTGAGCATCATCCAATCCAACACTCAGTCAGCCTCCACACAGCTCGCGC------CAGGCAAAACCAGG
CAGAAACGGG----------------------------------AGAGGTGCACATAATTCTG--TCTCCTTGATCGTGT
CTTCTGGCTC----GTGTACGT--------CTTGTTGCC-----------------------------------------
------AGACT-----------TGTAAACATTTGCAAAAGCTGCTCCGTATAGCT--GCTTC-TTTTTT-----------
------------------------------------TTACAGCATGAG--------------------------------
----CATATCATGC-----CACCATGTTTACAATTTACATTTTGCAGGTAACG--------GGTGTTGCCTCA-----TG
TGTTCTCCTGAGC---------AGCCGGCCATGCTATTGCTGTTGGCACTGCTGCTGCTCTGTAA---CAACG---GAAT
CAGTGACGTCGAAGGCTCAACGATCCATG---AGAGT---AGCATCGTCGATCTGCATGCGCTGCTCGATTTCAAGCTGG
GCATCACCAACGATCCACAAGGAGCCTTGAACAGCTGGAGCAACAACACCCACTTTTGTCGATGGCGTGGTGTGAACTGC
ACCACAACATCACCGTTTCGTGTCACCGAGATTAACCTCACTAGCCTGGACTTAGCAGGCCAAATTACCTCCTCTCTTGG
AAACATGACCTTCCTTCGATCACTCGACCTTGAGTGGAATAAATTCGTTGGTCCCATGCCTATCCTTGCCCGCCTCCAAC
AACTGCACACACTTTATCTAAACAACAACCATCTACACGGGATAATTCCTGATTCACTTACCAACTGTACCAGCTTGG--
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>chr4A_339
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--------------GGAATCCATAGAAAACAGGACAATGGAGCGAATAACCGTTAAATCTTGAACCATAGACCATTAAAC
GGCTCCACATGGTGATGGTTGTCAGTAACGAAACCTATTGAGATAGGGGACACATCAACTAATTAGAAGATCTTTGTCCG
G-CCCGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------AAGAAAAGTATATAGTTGGAGAATC-GTAGACCTGTGGGACTCCAGACCATACATGTCGCAACAACCT
TGTCCAGCTCAAACAGTGACG----------------AGCGGTGAAAAGTAGTGGTTAATGGAAAGCTTGACGGAGTCTA
GAAGTCCAGGTGGAGGTCAAGCTAA-TAATGAAGATAAGAGGCTTGAGAA-----------------------------T
TTGAGATGAGA------TGGATGCGAGCGTGTGGATGCCAGGCTGCTGTAAATGTGCTTTTAAACCA----TGGGGAACT
GGCTCAGCCGTCTGAGCATCATCCAACCCAA-------TCAGCCTTCACAGCTCTCCCGG------CGAAACTAAGGAGG
GACGTACGGG----------------------------------AGAGGTGCTGCAAATTCTC--------------TAT
CTTTTGGTTT----GTGTTCGT--------TTTGCTGTAAATTCTCTCTCCTTATCAGCTCTATATAGATTTTATCTGGA
AAAAGAAGACT-----------TCTATACATTTTGTAAAGCTGCTCCGTATAGAC-------------------------
--------------------------------------ACGGCATGAGCCTAATCTACATCCGCTACGTACTATGCACGC
AGTTCATAGCATGCCATGGCACCAAGTTTATGATTTACATTTTGCAGGTGACA--------GGTGTTGCCTCA-----TG
CGTTCTCGCAAGC---------AACTGGCCATGCTATTGCTGTTGGCACTGTTGCTGCTCTGTAAT------GACAGAGT
TGGCAACGTCAAAGGCTTAACGATCCACG---AGAGT---AGCATCGTCGATCTGCATGCGCTGCTCGATTTCAAGCAGG
GCATCACCGACGATCCACGAGGAGCCTTGAGCAGCTGGACCAACAACACCCACTTCTGTCGATGGCGTGGTGTGAACTGC
ACCACAACACGTCCGTTTCGCGTCTCGCGGCTTGTCCTCACCGGCCTGGATTTAGCAGGACAAATCACCTCCTCTCTTGG
AAACATGACTTTCCTTCAATCACTCGACCTTT------------------------------------------------
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>chrUn_339
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--------------GGAATCCATAGAAAACAGGACAATGGAGCGAATAACCGTTAAATCTTGAACCATAGACCATTAAAC
GGCTCCACATGGTGATGGTTGTCAGTAACGAAACCTATTGAGATAGGGGACACATCAACTAATTAGAAGATCTTTGTCCG
G-CCCGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------AAGAAAAGTATATAGTTGGAGAATC-GTAGACCTGTGGGACTCCAGACCATACATGTCGCAACAACCT
TGTCCAGCTCAAACAGTGACG----------------AGCGGTGAAAAGTAGTGGTTAATGGAAAGCTTGACGGAGTCTA
GAAGTCCAGGTGGAGGTCAAGCTAA-TAATGAAGATAAGAGGCTTGAGAA-----------------------------T
TTGAGATGAGA------TGGATGCGAGCGTGTGGATGCCAGGCTGCTGTAAATGTGCTTTTAAACCA----TGGGGAACT
GGCTCAGCCGTCTGAGCATCATCCAACCCAA-------TCAGCCTTCACAGCTCTCCCGG------CGAAACTAAGGAGG
GACGTACGGG----------------------------------AGAGGTGCTGCAAATTCTC--------------TAT
CTTTTGGTTT----GTGTTCGT--------TTTGCTGTAAATTCTCTCTCCTTATCAGCTCTATATAGATTTTATCTGGA
AAAAGAAGACT-----------TCTATACATTTTGTAAAGCTGCTCCGTATAGAC-------------------------
--------------------------------------ACGGCATGAGCCTAATCTACATCCGCTACGTACTATGCACGC
AGTTCATAGCATGCCATGGCACCAAGTTTATGATTTACATTTTGCAGGTGACA--------GGTGTTGCCTCA-----TG
CGTTCTCGCAAGC---------AACTGGCCATGCTATTGCTGTTGGCACTGTTGCTGCTCTGTAAT------GACAGAGT
TGGCAACGTCAAAGGCTTAACGATCCACG---AGAGT---AGCATCGTCGATCTGCATGCGCTGCTCGATTTCAAGCAGG
GCATCACCGACGATCCACGAGGAGCCTTGAGCAGCTGGACCAACAACACCCACTTCTGTCGATGGCGTGGTGTGAACTGC
ACCACAACACGTCCGTTTCGCGTCTCGCGGCTTGTCCTCACCGGCCTGGATTTAGCAGGACAAATCACCTCCTCTCTTGG
AAACATGACTTTCCTTCAATCACTCGACCTTT------------------------------------------------
--------------------------------------------------------------------------------
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>chrUn_339
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--------------GGAATCCATAGAAAACAGGACAATGGAGCGAATAACCGTTAAATCTTGAACCATAGACCATTAAAC
GGCTCCACATGGTGATGGTTGTCAGTAACGAAACCTATTGAGATAGGGGACACATCAACTAATTAGAAGATCTTTGTCCG
G-CCCGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------AAGAAAAGTATATAGTTGGAGAATC-GTAGACCTGTGGGACTCCAGACCATACATGTCGCAACAACCT
TGTCCAGCTCAAACAGTGACG----------------AGCGGTGAAAAGTAGTGGTTAATGGAAAGCTTGACGGAGTCTA
GAAGTCCAGGTGGAGGTCAAGCTAA-TAATGAAGATAAGAGGCTTGAGAA-----------------------------T
TTGAGATGAGA------TGGATGCGAGCGTGTGGATGCCAGGCTGCTGTAAATGTGCTTTTAAACCA----TGGGGAACT
GGCTCAGCCGTCTGAGCATCATCCAACCCAA-------TCAGCCTTCACAGCTCTCCCGG------CGAAACTAAGGAGG
GACGTACGGG----------------------------------AGAGGTGCTGCAAATTCTC--------------TAT
CTTTTGGTTT----GTGTTCGT--------TTTGCTGTAAATTCTCTCTCCTTATCAGCTCTATATAGATTTTATCTGGA
AAAAGAAGACT-----------TCTATACATTTTGTAAAGCTGCTCCGTATAGAC-------------------------
--------------------------------------ACGGCATGAGCCTAATCTACATCCGCTACGTACTATGCACGC
AGTTCATAGCATGCCATGGCACCAAGTTTATGATTTACATTTTGCAGGTGACA--------GGTGTTGCCTCA-----TG
CGTTCTCGCAAGC---------AACTGGCCATGCTATTGCTGTTGGCACTGTTGCTGCTCTGTAAT------GACAGAGT
TGGCAACGTCAAAGGCTTAACGATCCACG---AGAGT---AGCATCGTCGATCTGCATGCGCTGCTCGATTTCAAGCAGG
GCATCACCGACGATCCACGAGGAGCCTTGAGCAGCTGGACCAACAACACCCACTTCTGTCGATGGCGTGGTGTGAACTGC
ACCACAACACGTCCGTTTCGCGTCTCGCGGCTTGTCCTCACCGGCCTGGATTTAGCAGGACAAATCACCTCCTCTCTTGG
AAACATGACTTTCCTTCAATCACTCGACCTTT------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr6B_393
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------AGACCAGTAAAC
CGTTCCACATGCTGATGTTTATCAGCATCGTAACCGCTGGAGAGAGGTCGCACATCAGTGC---AGAAAATCTCTGTCTG
TTTCCGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TCGAAAAGTATATAGCTGGACAATCGGTAGACCCGTGCGATTCGAGGCTAGACATGCCGCAACAACCT
TGTCCAGCTCAAACAGCGACCACACCGGTGGGCGACAAGAGGTGAAAAGAAGCGTTTACTGGAAAGTTTGAAGGATTCCA
GGTCTTCGCTGTAGCCGCGGTCAAGCTTAAGATA-----ATTCGTGAGAA-----------------------------A
TTCAGATGAGATGGAT----------GTGTGTGGATGCGAGGACGCCGTAAATGTGTTTTTAAACCCCTGGGGC------
--CTCGGCCAGCTGAGCATCTAAC--------------TCACACTTCACAGCTCATACACCACCATCCGGCAAATCCACG
CACAAACGGCTCCTGTACTGTACTGTTGTGCTCCCCGGCCGAGCAGAGGTGCGTT---TTCTC--TCTCCTTGATTATTT
CTTTTGGCTT----GAGTATAT--------CTTGCTGTC-----------------------------------------
------AGACTTGTGGGTGAAATGCAACCATTTGCTAAAGTTACTCCGTTACGCTTCAAATAACTGACTGCTGGTACTCA
ATGTCGCGTCCACACGTATTGATTGTTCATAGCTGGTTACAGCATGGGCGCAACCTAAATCGGC----TAGTAAACATGC
GGTTTATAATTTGC-----CACCAAGTTTATG-TTTACGTTTTGCAGGTGACG--------AGTGC---CAAA-----TG
CGTTCTCCCAAGCAACTGGCGAAGCTCGCCATGCTTTTACTGCTGGCGTTGCTGCTGCTCTGCAAT------G---GAGT
TCGCAACGTTCATTGCTCAAGGATCCACG---AGAAT---AG---CGTCGATCTGCACTCGCTAATTGAGTTCAACAAGA
GCATCACCGACGATCCTCAAGGAGCCTTGAGTAACTGGGACACCACAACCCACTTCTGCCACTGGAATGGTGTCAACTGC
ACCACGACACCACCGTTCCGTGTCAAGCAGCTTAAACTCAGCGGCTGGAACTTAGGAGGCCAAATCACCTCCTCTCTTGG
AAACTTAACCTTCCTTGAAACGCTTGACCTTTCATACAATAACTTCGTTGGCCCCTTGCCTATCCTTGGCAATCTCCAAC
GATTGCAGACACTTTATCTGTACCACAACCGTTTAAATGGGATGATTCCTGATTCAATTACCAATTGTTCCAACTTGGCC
AACTTAGATCTATCCGCAAACTCGCTAGTTGGCGTAATTCCACCAAAATTAGACCTGCTTTCAAATCTGTCCTACTTAAA
CCTATCCAGAAATTCCCTAGCGGGCGTAATTCCTACGAAACTGGGCTTCCTTTCCAATCTGACCGTCGTAGATCTCTCTG
TAAACTTGCTAGTGGGTCAAATTCCTCCCAAACTAGACTTACTTTCGAAACTGTTCTACTTGGATCTCTCT-AGAAA-CT
CACTAGTGGGTCAAATTCCTCCGAGATTAGGCTTTCTTAAAAATCTAGAATATCTCTATCTTGGATCAAACCAACTCGAG
GGGAGCATTCCTGATGAGCTTGGGCAATTGCTGCAATTGGAACAGCTGCTCCTAGGCAACAATAAGCTTACAGGTGAA--
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-----------------------------------------------
>chr6B_393
--------------------------------------------------------------------------------
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--------------------------------------------------------------------AGACCAGTAAAC
CGTTCCACATGCTGATGTTTATCAGCATCGTAACCGCTGGAGAGAGGTCGCACATCAGTGC---AGAAAATCTCTGTCTG
TTTCCGG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TCGAAAAGTATATAGCTGGACAATCGGTAGACCCGTGCGATTCGAGGCTAGACATGCCGCAACAACCT
TGTCCAGCTCAAACAGCGACCACACCGGTGGGCGACAAGAGGTGAAAAGAAGCGTTTACTGGAAAGTTTGAAGGATTCCA
GGTCTTCGCTGTAGCCGCGGTCAAGCTTAAGATA-----ATTCGTGAGAA-----------------------------A
TTCAGATGAGATGGAT----------GTGTGTGGATGCGAGGACGCCGTAAATGTGTTTTTAAACCCCTGGGGC------
--CTCGGCCAGCTGAGCATCTAAC--------------TCACACTTCACAGCTCATACACCACCATCCGGCAAATCCACG
CACAAACGGCTCCTGTACTGTACTGTTGTGCTCCCCGGCCGAGCAGAGGTGCGTT---TTCTC--TCTCCTTGATTATTT
CTTTTGGCTTGTAGGAGTATAT--------CTTGCTGTC-----------------------------------------
------AGACTTGTGGGTGAAATGCAACCATTTGCTAAAGTTACTCCGTTACGCTTCAAATAACTGACCGCTGGTACTCA
ATGTCGCGTCCACACGTATTGATTGTTCATAGCTGGTTACAGCATGGGCGCAACCTAAATCGGC----TAGTAAACATGC
GGTTTATAATTTGC-----CACCAAGTTTATG-TTTACGTTTTGCAGGTGACG--------AGTGC---CAAA-----TG
CGTTCTCCCAAGCAACTGGCGAAGCTCGCCATGCTTTTACTGCTGGCGTTGCTGCTGCTCTGCAAT------G---GAGT
TCGCAACGTTCATTGCTCAAGGATCCACG---AGAAT---AG---CGTCGATCTGCACTCGCTAATTGAGTTCAACAAGA
GCATCACCGACGATCCTCAAGGAGCCTTGAGTAACTGGGACACCACAACCCACTTCTGCCACTGGAATGGTGTCAACTGC
ACCACGACACCACCGTTCCGTGTCAAGCAGCTTAAACTCAGCGGCTGGAACTTAGGAGGCCAAATCACCTCCTCTCTTGG
AAACTTAAATTTCCTTGAAACGCTTGACCTTTCATACAATAACTTCGTTGGCCCCTTGCCTATCCTTGGCAATCTCCAAC
GATTGCAGACACTTTATCTGTACCACAACCGTTTAAATGGGATGATTCCTGATTCAATTACCAATTGTTCCAACTTGGCC
AACTTAGATCTATCCGCAAACTCGCTAGTTGGCGTAATTCCACCAAAATTAGACCTGCTTTCAAATATGTCCTACTTAAA
CCTATCCAGAAATTCCCTAGCGGGCGTAATTCCTACGAAACTGGGCTTCCTTTCCAATCTGACCGTCGTAGATCTCTCTG
TAAACTTGCTAGTGGGTCAAATTCCTCCCAAACTAGACTTACTTTCGAAACTGTTCTACTTGGATCTCTCT-GGAAA-CT
CACTAGTGGGTCAAATTCCTCCGAGATTAGGCTTTCTTAAAAATCTAGAATATCTCTATCTTGGATCAAACCAACTCGAG
GGGAGCATTCCTGATGAGCTTGGGCAATTGCTGCAATTGGAACAGCTGCTCCTAGGCAACAATAAGCTTACAGGTGAA--
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>chr7D_834
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---------CT-----------TGTAAACATTTGCAAAAGCTGCTCCGTAGAG-T--AGTTTTTTTTTT-----------
------------------------------------TGGCAGCATCAACCTAAC--------AC----TACTATACATGC
AGTTCATATCATGC-----CACCAAGTTTATGGTTTACAATTTGCAGGTGACG--------GGTGATGCCTCA-----TG
TGTTCTCCAGAAC---------AGCTGGCCATGTTATTGCTGTTGGCACTACCGCTGCTCTGCAATAGC---G---GAGT
CGGCGACGCCGATGGCGCAACAATCCACG---AGAGCAGCAGCGTCGTCGATTTGCACGCGCTGCTCGACTTCAAGCATG
GCGTCACCGACGATCCACAAGGAGCATTAAGCAACTGGAGCAACAACACCCACTTCTGTCGGTGGAATGGTGTAAACGGC
ACCACGACACCACCGTTTCGGGTCTCGCGCCTTGTCCTCACCGGGGTGGATTTAGCAGGACAAATCACCTCCTCTCTTGG
AAACATGACCTTCCTTCGAAAGCTCGACCTTTCATCTAATAACTTTGTTGGCCCCGTACCTACCCTTGACTGTCTCCAAC
AACTAGACACACTTTACCTGTACGACAACCATCTACGTGGGACGATTCCTGATTCACTTA---AGTGTTCCAGCTTGGCC
AACTTAGATTTCTCCGTAAATTCGCTAGTGGGTCAAATTCCTCGAAAACAGGACTTTCTTTCACATCTTTCCTACCTAAA
CCTCTCTGAAAACTCCATAGCGGGTCCAATCCCTCCGGAACTAGGTTTCCTTTCAAATCTGTCCGTCTTAGATCTCTCCA
CAATCTTGTTAGTTGGTCAAATCCCTCCGAAACTAGGCCTCCTTTCGAATTTGATCTACTTGGTTCTCTCC-A-AAA-CT
TACTAGTGGGTCGAATTCCTCCGAGTTTAGGCTTTCTTCCAAATCTAGAATATATCTATCTTCGATCAAATCAACTCGAG
GGGAGCGTTCCTGATGAGCTTGGGCAATTGCAGCAATTAAAAGAGTTATACCTGGGCGATAATAAGCTTTCAGGCGAA--
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>chr6D_907
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--------------------------------------------------------------------------ACATGC
AGTTCATAACTTGC-----TACCAAGTTTATGATTTAAATTTTGCAGGTGAGC--------AGGGC---CTGA-----TG
CGTTCTCCCAAGCAACCGGCGAAGCTCGCCATGCTTTTACTGTTGGCACTGCTGCTGCTTTGTAA---C---G---GAGT
TGGCAACGTCCATTGCGCAAGGATCCACG---AGAGC---AG---CGTCGATCTGCACGCGCTGCTAGACTTCAAGCAGG
GCATCA---ACAATCCTCAGGAAGCCTTGAGTAGCTGGAACATCACAACCCATTTCTGCCACTGGCATGGTGTCAACTGC
ACCACGGCACCACCGTTCCGCGTCTCGTCGCTTAAGCTCACTGATTTGGACTTAGCAGGCCAAATCAGCTCCTCTCTTGG
AAACTTAACCTTCCTTGGAACGCTTGACCTTTCTTATAATACCTTCGTTGGTCCCTTACCTGTCCTTGGCCATCTCCAAC
AACTCCAGACACTTTCTCTGAACAACAACAGGTTAAATGGGATGATTCCTGATTCACTTACCAACTGTTCCAGCTTGGAC
ACTTTAGATCTCTCTGTTAACTCGCTAGTGGGTCCAATTCCTCCGAATCTAGACTTTCTTTCAAACCTCACTTACTTAGA
TCTCTCTAGTAACATGCTAGAGGGTCAAATTCCGCCGAAACTAGTTTCCCTATCAAAGCTGGACACATTAGATCTCTCTA
GTAACATGCTAGTGGGTCAAATCCCTCCAAATCTGGATTTGCTTTCATCTCTGACTTACTTAAGTCTCTCT-A-GTAACA
TGCTAGTGGGTCAAATTCCT------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr6A_1000
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-----------------------------CATGCTTTTACTGTTGGCACTGCTGCTGCTCTGTAAC------G---GAGT
TGGCAACGTCCATTGCACAAGGATCCACG---AGAAC---AG---CGTCGATCTGCACGCGCTGCTAGACTTCAAGCAGG
GCATCA---ACAATCCTCAGGAAGCCTTGAGCAATTGGAGCACCACCACCCACTTCTGTCGATGGAATGGTGTCATCTGC
ACCACGACACGGCCGTTTCGTGTCTTGTCGCTTATACTCACTGAATTGGACTTAGCAGGCCAAATCAGCTCCTCTCTTGG
AAACTTAACCTTCCTTGAAACGCTTGACCTTTCATATAATAACTTCGTTGGTCCCTTACCTGTCCTTGGCCATCTCCAAC
AACTCCAGACACTTTCTCTGAACAACAACAGGTTAAATGGGATGATTCCTGATTCACTTACCAACTGTTCCAGCTTGGAC
ACTTTAGATCTCTCTGTAAACTTCCTAGTGGGTCCAATTCCTCCGAATTTGGACTTGCTTTCAAATCTTACTTACTTAGA
TCTCTCTAGTAACATGCTAGTGGGTCAAATTCCTCCGAAACTAGTTTCTCTATCAAAGCTGGTCACATTAGATCTCTCCC
ATAACATGCTAGTTGGTCCAATTCCTCCGAATCTGGACTTGCTTTCAAATCTGACTTACTTAGATCTATCT-A-GAAACT
TGCTAGTGGGTCAAATTCCTC-----------------------------------------------------------
--------------------------------------------------------------------------------
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>chr7A_1059
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--------------GCTCGACGTTCCACG---AGAGT---AGCATCGTCGATCTGCATGCGCTGCTTGATTTCAAGCAGG
GCATCACCGACGATCCACGAGGAGCCCTGAGCAGCTGGAGCAACAACACCCACTTATGTCGATGGCGTGGTGTAAACTGC
ACCACAACACGTCCATTTCGCGTCTCGCGGCTTGTCCTCACCGGCCTGGATTTAGCAGGACAAATCACCTCCTCTCTTGG
AAACATGACTTTGCTTCGATCGCTCGACCTTTCATCTAATAACTTGGTTGGCCCCATACCTATCCTTGGCCATCTCCAAC
AACTGGAGACACTTTACCTGTACGACAACCATCTGCATGGGACAATTCCCGATTCAGTCACCAACTGTTCCAGCTTGGCC
AACTTAGATCTCTCTGTAAATTCGCTAGTGGGTGTAATTCCACCGAAACTACACTTCGTTTCACATCTTTTCTACCTAAA
CCTCTCTCAAAACTCTATAGCAGGGCCAATCCCTCCGGGACTAGGTTTCCTTTCAAATCTGTCCTACTTGGATCTCTCTG
GAAACTTGCTAGTGGGTCATATCCCTTCGAAACTGGGCCTCCTTTCAAATCTGATCCTCTTGGGTCTCTCC-A-GAAACT
TGGTAGTGGGTCAAATTCCTCCGAGCTTAGGTTTTCTTCCAAATC-----------------------------------
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>SNPs
SS------------------------------S--S----------S--------------S---S--------------
SSSSSSSS-S-SSS-S-SSSS-----------------------S-------------S----------S---S------
S------S---S---------S----------SSSS----S---------S-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S-----SSSSSSS-----------S-S----------S-SSSSSSS-------S---S----S
---S-----S-S------------------------------------S----------------S-----S--------
-SS-SSSSSSS---------S----------------------------------------S------------------
--S----------------S--------S-S-------------SS------------------S---------------
--------------------------------------------------------------------------------
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--------------------------------------------S-----------------------------------
---------------------------------------------------------S-------------S--------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
-----------------------S--------------------------------------------------------
-----S--------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S-------S--------
------------------------------------------------------------------------SSSSSS--
-----------------------------------------------S-----------S-----------S--------
--------------------------------------------------------------------------------
-S------------------------------------------------------------------------------
-----------------------S-S--S----------S-----------S--S-----S-------S--------S--
-----------------S--S--------------------------------------S--------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
-------SS------------S-----------------------S---------S----------------------S-
------S------------------------------------------------------------------S------
----------------------S---------------------------------S-------------------S---
--S---------SSS-----------------S---S-----------------S-----------------------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1526
--------------------------------------------------------------------------------
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------------------------------------------------------------------CAGGCAAAACCAGG
CAGAAG--------------------------------------------------------------------------
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>reverse_3051
--------------------------------------------------------------------------------
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----------GCAAGCAATCACACAGCACA--------------------------------------------------
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-----------------------------------------------
