>input_sequence_67944
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----------------------------------------ATGGCGGATACCAACGGCAACGGCAACGGCAACGGGGCCG
CGAGCAGCGTGACGGCGCCGCTGATGCTCCACGGGCGCGTGGCGATCGTGACGGGCGGCGCCGGCGGCATCGGCTCGGCC
GTGTCGAAGCACCTGGCAGCCCTGGGCGCGCGCGTGGCGGTGGCCTAGGTCGGGGGCCCGGCGCCGGCCAAGGAGGTCGT
GGCCGGCATCAACGCCGCCCACGGCGACGGCCAT---------------------GCCATCGCGGTGGAGGCGGACGTGT
CGGACGCGGCGCAGGTGCGGGCGCTGTTCGACGCGGCGGCGGCGGCGTTCGGCGGGGAGCTGCACGTGCTCGTCACGACA
GCGGCGGTGCTGGACTACTCGTACCCGGCGCTGGCGGAGACGAGCGAGGCGACGTACGACGCCGCGTTCGGCGTCAACGC
GCGGGGCACCTTCCTGTGCCTCCGGGAGGCGGCCAACCGGCTGGCGCGCGACGGGCGGGGCCGCATCGTCACCTTCTCGT
CGTCGGGGGTCGGGTCGCTGCGGCCCGGCTACGCGGCGTACGCGGCCAGCAAGGCGGCGGTGGAGACGATGACGAGGATC
CTGGCCAAGGAGCTGCGGGGCACGGGGATCACCGCCAACGCCGTGGCGCCGGGGTCCACGGCCACCCCGATGTTCTACAA
CGGGAAGACGGAGGAGGAGGCGGCGCGGTACATCGCCGAGGCGCCGCTGGGGCGGCTCGGGCTGCCGGAGGACATCGCGC
CGCTCGTCGGGTTCCTCGCCAGCGACGCCGGCGGGTGGGTCAACGGCCAGGTGCTGCGCTGCAACGGGGGCACCATATAG
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>chr3B_1_TraesCS3B01G546100
TTCAGTTTACCAACAAGCATTACAACTTGCACTTTTCACAAAGTTGTACTTCCTCCGCTCACAAACGTAAGCTGCTTTGA
ATATTTTAATATGGACCACATATGACTGAAATGAGTGAACAAATGCACTAAAACAAGTCTATATGCATCCAATTCAAAAA
AAAAAAGTTAGAACATCTTATATTTGTGAACCAGAGGGAGTATTATTTTGCATGTAAAGTAATTTGTAGGAGTAATTTGG
AGGCAACGCGAGTGCGGTCTTTTGGCGGGCAACCTCCATGGAGGTGGTTATTTTTAAAAATTCGATAATGACATTTCGGA
GTTTTAAAAAATTCTGAAAAAAATTATACACATTCATATGGATGTATTCCGCATGCGTATAAAGTCTGACGACGAAATAC
ATTATGGAGAGAGCTACACAAAAAAGAGAAAATCCTACCTTTCTAATAGTGAACAGTACATGTACTGTTCATCAGTTTCA
GATCGCGATTTTCTCTTTTTTGTGTAGCTCTCACCATAATATGTATCATCTGAAAAAATTACACACATGTAGGATACATC
CATATGAACATGTATGATTTTTACCAAATTTTTTGAAACTTTAAAATATGGTTTTTGACTTTGTCAAAATAACCACCTCC
ATGGAGGTCACCCGTCATTGGCATTTTGCGGAGGCAACGCCACGTACACGAGTATAAACTGTAAACCTCGAACTCTACAG
TAGATTTGCTAGTCCATGCTAAATTTGGGACATATACCCACCCTCATAAATCTCTGCTATCGGCATGGGCACAGCATTGC
ACCAGCAGTCCTCTGTAATTAAATTCGCTTTGATTGTGCCTGCCCCACTCTTTTTTATTATTATTATTTTCTTACTCTTG
TAGAGCGCTCTCCGGCTTATATACGTGGCGTTGCCTCCTGCAACAAACATACGCCCGCATGCGTTCCCTGTCCTTCGTCT
TGCTCAGCTCACGCTCGCTCACCGTGAGACGCGCTCAGGGATGGCGGATACCAACGGCAACGGCAACGGCAACGGGGCCG
CGAGCAGCGTGACGGCGCCGCTGATGCTCCACGGGCGCGTGGCGATCGTGACGGGCGGCGCCGGCGGCATCGGCTCGGCC
GTGTCGAAGCACCTGGCAGCCCTGGGCGCGCGCGTGGCGGTGGCCTAGGTCGGGGGCCCGGCGCCGGCCAAGGAGGTCGT
GGCCGGCATCAACGCCGCCCACGGCGACGGCCAT---------------------GCCATCGCGGTGGAGGCGGACGTGT
CGGACGCGGCGCAGGTGCGGGCGCTGTTCGACGCGGCGGCGGCGGCGTTCGGCGGGGAGCTGCACGTGCTCGTCACGACA
GCGGCGGTGCTGGACTACTCGTACCCGGCGCTGGCGGAGACGAGCGAGGCGACGTACGACGCCGCGTTCGGCGTCAACGC
GCGGGGCACCTTCCTGTGCCTCCGGGAGGCGGCCAACCGGCTGGCGCGCGACGGGCGGGGCCGCATCGTCACCTTCTCGT
CGTCGGGGGTCGGGTCGCTGCGGCCCGGCTACGCGGCGTACGCGGCCAGCAAGGCGGCGGTGGAGACGATGACGAGGATC
CTGGCCAAGGAGCTGCGGGGCACGGGGATCACCGCCAACGCCGTGGCGCCGGGGTCCACGGCCACCCCGATGTTCTACAA
CGGGAAGACGGAGGAGGAGGCGGCGCGGTACATCGCCGAGGCGCCGCTGGGGCGGCTCGGGCTGCCGGAGGACATCGCGC
CGCTCGTCGGGTTCCTCGCCAGCGACGCCGGCGGGTGGGTCAACGGCCAGGTGCTGCGCTGCAACGGGGGCACCATATAG
CCTCCCTCTCCCTCCCTCCCTCCCTCGCTCGTCCTTGGCGAAATGAGCTAGTGGTATCTAATATGGATCGGAGGGAGTAC
TTCGAATCCAACACTACTTTGACCCATTTCTGTGCAAATTCACTTCAAACCCAAAACCCTGATCTGCAAATGACTTCAGA
CCCATTTGAGTTCATTTAGTTGCAGATGGCCAAGCTTGGTCCTGGCCGATATTACCAATTGCCCATTGGTCACCGACACA
ATGCACCCATGAACATCGTTTTTTCTTTTCTTTCGCCACTCTCAGATCTTAAATAAAATGTGAAATCCACCATTCATTTT
GGCTATCAATTACAAACCGAGCAGTGATATTAAGCACGCCGCTCCAAAATCAAGGAGCAGGTAACTTGCAGTATGTTTTA
AACCCACTACATGCTGAACTTTTAGCTTTCAACAAGCTGTGTATGCTGCTATTCAAATGAGTTGTCAAAAAGTGATGTTT
GAAACAGATTGCATGGTGCTGATGCAAGCTATTGTTTATGATAAATATGACCTGTCAACTATAGGCACTTTGTTTAAAGA
GATTAAATTTCTTATACATGAGGGGCTTAAGTGATGTATCCATAGTGCATTGTAAGCATGAATAATGCGGAAATTCACTT
TGACTCATAGGTGTATAGCAACTCACGCTTTAGCTGTAATGCATTCATACGGAAGTTACCTGTTCTGATAATTGGCTAGG
CCAATTTCCAAAGTTTGTATCAAATGCTGTAGCGGGCGATATGTCCAGCATTTTACTGTATTAATTTAATGCGTTGTGTT
CCTTCAAAAAAAATCAATGTTCTATTAAGAGATAATCTAATAACTATGTTGCAATTAACTCCAAATCCATGAGTTGTGGT
TTTGTGATACTCAAAAACCCAACTGAACTAAACATACTCCCTCCATTCCTAAATACATGTCTTTTTTAGAGATTCCAATA
TAGACTATATACGAAGCAAAATGAGTTTATCTACACCCTA
>chr3B_1024
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---------------------------------------------------------------CAACGGTAACGGCTCCC
CGAGTAGTGTGACTACGCCACTGATGCTCCACGGGCGCGTGGCGATCGTGACAGGCGGCGCTGGCTGCATCGGCTCGGTC
GTGTCGAAGCACCTCGCATCCCTAGGCGCGCGCGTGGCGATCGGCTACGTCGGGGACCCGAAGCCGGCGAAGGAGCTCGT
GGGCGGCATCAACGCCGCGCACGGCGGCGGTCGG---------------------GCCATCGCAGTGAAGGCCGACGTGT
CGGACGCAGCGCAGGTCAGGGCGCTGTTCGACGCGGCGGCGGCGGCGTTCGGCGGGAAGCTCCATGTCTTGGTGACAATG
GCAGCGGTGCTAGACTGCTCGAACCCGATGCTGGCGGATATGAGCGAGGCGTCCTACGACGCCACGTTCGGCATCAACGC
GCGGGGCACTTTCCTGTGCTGCCGGGAGGCGGCGAACCGGCTGGCGCGCGACGGGCGTGGCCGCATCGTCACGTTCTCGT
CGTCGGCGGTCGGGTCACTGCGGCCCGGGTTCACGGCGTACGCTGCCAGCAAGGCGGCGGTGGAGGCGATGACGAGGATC
CTGGCGCGGGAGCTGCGCGGCACGGGGATCACCGCCAACGCGGTGGCGCCGGGGCCCACGGCCTCGCCCTTGTTCTACAA
CGGCAAGACGCCTGAGGAGGCTGAACGGTACATCGCCGAGGCGCCACTGGGGCGTATCGGGTTGCCGGGGGACATCGCAC
CGCTCGTGGGCTTCCTCGCCAGCGACGCCGGCGGATGGGTCAACGCCCAGGTCCTGCGCTGCAACGGGGGCTCCATCTAG
CCTCC---------------------------------------------------------------------------
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>chr5D_1034
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-------------------------------------------------------------------------GGCGCCG
CCGCGAGCGTGACGGCGCCGATGATGCTGCACGGGCGCGTGGCGATCGTCACGGGCGGCGCTGGAGGGATCGGCTCGGCC
GTGTCGAGGCACCTGGCGTCCCTCGGCGCGCGCGTGGCCGTCGCCTACGTCGGGGACCCGGCGCCCGCGCGGGAGCTCGT
GGCCGCCATCAACAACGCCGCGCACGCCGGCGACCAT---------GGCCCGCGCGCCGTGGCGGTGGAGGCGGACGTGT
CGGACGCGGCGCAGGTGCAGGCGCTGTTCGACGCGGCGGCGGCGGCGTTCGGCGGGGAGCTGCACGTGCTGGTCACGGCG
GCGGCGGTGATGGACACCTCCTACCCGCCGCTGGCCGACACCAGCGAGGCGACCTACGACGCCGCCTTCGGCACCAACGC
GCGGGGCACCTTCCTGTGCCTCCGCGAGGCGGCGCGCAGGCTGGCCCGCGACGGGCGCGGCCGGATCGTCACCTTCTCGT
CGTCCGGGGTCGGGTCGCTGCGCCCGGGCTACGCGGCGTACGCGGCCAGCAAGGCGGCCGTGGAGACCATGACGAGGATC
CTGGCGCGCGAGCTGCGGGGCACCGGGATCACCGCCAACGCCGTGGCCCCCGGGTCCACGGCCACGCCCATGTTCTACGG
CGGCAAGACGGACGAGGAGGCCGAGCGGTACATCGCGGAGGCGCCGCTGGGGAGGCTGGGGATGCCCGAGGACATCGCGC
CGCTCGTGGGCTTCCTCGCCAGCGACGCCGGCGGGTGGGTCAACGCCCAGGTCCTGCGCTGCAACGGCGGCACCAT----
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>chr5A_1046
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-----AGCGTGACCGCGCCGATGATGCTGCACGGGCGCGTGGCGATCGTCACGGGCGGCGCCGGCGGGATCGGCTCGGCC
GTGTCGCGGCACCTGGCGTCCCTCGGCGCGCGCGTGGCCGTCGCCTACGTCGGGGACCCGGCGCCGGCGCGGGACCTCGT
GGCCGGCATCAACGCCGCCGCGCACGGAGCCGACCAT---------GATCCGCGCGCCGTGGCGGTGGAGGCGGACGTGT
CGGACACGGCGCAGGTGCGGGCGCTGTTCGACGCGGCGGCGGCGGCGTTCGGCGGGGAGCTGCACGTGCTGGTGACGGCG
GCGGCGGTGATGGACACCTCCTACCCGCTGCTGGCGGACACGAGCGAGGCGACCTACGACGCGGCCTTCGGCACCAACGC
GCGGGGCACCTTCCTGTGCCTCCGCGAGGCGGCGCGCCGGCTGGCCCGCGACGGCCGCGGCCGGATCGTCACCTTCTCGT
CGTCCGGGGTCGGGTCGCTGCGGCCGGGCTACGCGGCGTACGCGGCCAGCAAGGCGGCCGTGGAGACCATGACGAGGATC
CTGGCGCGGGAGCTGCGGGGCACCGGGATCACCGCCAACGCCGTGGCCCCCGGGTCCACGGCCACGCCCATGTTCTACGG
CGGCAAGACGGACGAGGAGGCGGAGCGGTACATCGCGGAGGCGCCGCTGGGGAGGCTGGGGATGCCCGAAGACATCGCCC
CGCTCGTGGGCTTCCTCGCCAGCGACGCCGGCGGGTGGGTCAACGCCCAGGTCCTGCGCTGCAACGGCGGCACCAT----
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>chr5B_1046
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-----AGCGTGACGGCGCCGATGATGCTGCACGGGCGCGTGGCGATCGTCACGGGCGGCGCCGGCGGCATTGGCTCGGCC
GTGTCGAGGCACCTGGCGTCCCTCGGCGCGCGCGTGGCCGTCGCCTACGTCGGGGACCCGGCGCCCGCGCGGGACCTCGT
GGCCGCCATCAACGCCGCCCCCGAGCACGGCGCTTCTGACCCTGGAGGCCCGCGCGCCGTGGCGGTGGAGGCGGACGTGT
CGGACGCGGCGCAGGTGCGGGCGCTGTTCGACGCGGCGGCGGCGGCGTTCGGCGGGGAGCTGCACGTGCTGGTCACGGCG
GCGGCGGTGATGGACACCTCCTACCCGCCGCTGGCCGACACCAGCGAGGCGGCCTACGACGCGGCCTTCGGCACCAACGC
GCGGGGCACCTTCCTGTGCCTCCGCGAGGCGGCGCGCCGGCTGGCCCGCGACGGGCGGGGGCGGATCGTCACCTTCTCGT
CGTCCGGGGTCGGGTCGCTGCGCCCGGGCTACGCGGCGTACGCGGCCAGCAAGGCGGCCGTGGAGACCATGACGAGGATC
CTGGCGCGGGAGCTGCGGGGCACCGGGATCACCGCCAACGCCGTGGCCCCGGGGTCCACGGCCACGCCCATGTTCTACGG
CGGCAAGACGGACGAGGAGGCCGAGCGGTACATCGCGGAGGCGCCGCTGGGGAGGCTGGGGATGCCCGAGGACATCGCGC
CGCTTGTGGGCTTCCTCGCCAGCGACGCCGGCGGGTGGGTCAACGCCCAGGTCCTGCGCTGCAACGGCGGCACCATAT--
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S-----S----
----S---------------------------------------------------------------------------
------------------S----S-----------------S-----S-------S------------S------S----
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----------------------------------------------------------------------S--------S
----------------S----------S----------S--------------S------------------S-------
---------------------------------S----------------------------------------------
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-----SSS---------------------------------------------------------S--S-----------
---S--------S----------S-------------------------------------S------------------
-------S--S----------------------------------S------S---------------------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_894
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--------------------------------------------------------------------------CTCTTG
TAGAGCGCTCTCCG------------------------------------------------------------------
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>reverse_2582
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---------------------AAATGCTGTAGCGGGCGATA---------------------------------------
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