>input_sequence_67943
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-----------------------------------------------------------------------------ATG
CCTCCGCCGCTGAAGGACATGCTGCCGCTCGCCGCGGCGGCGACCGAGTGCCGGCTCACCGGACTAGGCACGATCAAGAG
ACGCACCAACC-AAAGCAAACGCCACCCATGCACAGTGCGCGTGCACGGCCACCTCACCGTCGTCTACGAGCTGCTGGAG
CTGGGGGGCTCAC---GCACCAGCCGGCCCCTCCACCACCTCCAGGTCCAGTACGATGAGGACGCGCCCCGGAGCTTCGA
CCGCACGTTCCTGCTCAACGACCCCAGGACCTTCTTCCGGAGCCGCTCGGCCTGCCGCGACGGGATCAACCAGATGCTCA
CGCGGACGCCGGCCCTCCGCGACTTCGACCTCGCCGCCGCCAACTGGGACGGCGGCTTCCTGCCCGACGACCTCGCCGGA
ACCATCACGGGGAGGGCCCGGCTCGACGAGGAAGGCCATCACGGCGGCAACGCGCCGCGCTTCAGCCTCGACCTGTCCCT
GACCGTCTTCGTGCGGGCCGTCTGCAGCGAGGCCAAGCTGCAGGCGCTCGCGTGCAGGGAGGCCACCGCCCAGTGTGGGC
TGTCCGTGGCGGACCGCTG-CTGCTGCTGCATATG--------TCAGGATCAGGATATCGCGGCTGCTGAGGGCGGCGGC
GACGACGAAGGCACCGTGAGGCTGCCATGCTCACACACGTTCCACGTCCGCTGGCTTGCGCGGTGGTTCGAGGCGGTGAC
GACGTGCCCCCTGTGCCGCCGTGACATGGTCGTCCACCTTGAGGCCGTCTACACACACGATCGAGAGCAAGGCCGTAACC
GAGAAACTAAAGGCCCTATACA--AGTATAA-------------------------------------------------
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>chr3B_1_TraesCS3B01G139400
AAAGATAGAAAAATCCTATGCAAAATACCAG------------------------ACCGAAGCGGCCATCAAAGGATAAA
AAGACAGATCACCTCTTCACCCAAGCTTGATGTGGCTCCATCGCTGATCAACAGCTTTACGGACCTCCAAAGTAGTTTGC
CAAAAGCAAAACCATAGCCGTTGAAAGAATCAGACCGGGGCAACATGTCCACGGACACGCCATCGAACTTCAGAGCTGAC
ACCC-CGCATGATG---A---CGACGTCGGAGGAGAAAACCAGAACTGTCAGCCTTCGACCACAGACCCAACA--AGATA
CTTCATCTTCCAGATGTCACTTGCATAGACAACCGCCTGCACGTACTCCTGAATGGCAAAACCTCTTTGCTCCACCATGA
CGTCGGAGACAACGCCGCAGCAATGGGGACAGAGCAGAAGGAGAGACACCCCTGAAGGAGTCGCCGCCGCTGTCTCGCCA
ACACCATCCATGAACCCTAACGTTGTCGATCTGAGGGACCGACGAAGACACGATGCCATCAACTCCGAGACGCCGCCATG
AAAGACACTGCCGGCGTGGGAGTGAAGTTGAGACAGATTTATTCGTCCAGGCGCCACTCCCACCACCCCAACGACGCACC
ACGACTTATAAATCCAAACCCTACCTACAGAGCGGAGAAATGGGGTCCCCCGTCCCTCCTGCCGCCGGAGCAGCGGTCGA
AGGGAGAGGGGGCCAGCGCCCCGGCCGGTGAAGATCGGAGGAAATAGA-TCGCCTCTCCTAGAACGCCTGGTGGTGGCGG
CGGCTAGGGTAGGAACACGCTATTGGTTTTTTACTGTTGGCCTCGGATGCATCCTGCCAAAATGCCACGTTACGTATTGG
CCTCGGATGGA-TTCAGGACGGCAATTTTTGCTCTGTTTGCTCTCAG-ATTGTTCAATCCGACCCGGATTCCTCAGAGAC
CAACGCGGCTATATCCAACGTTCCTGTGCTCCCTGATCAGC-GAGCCGGGGAAGAAGGCCCGCCCTCTGCATGCGCGATG
CCTCCGCCGCTGAAGGACATGCTGCCGCTCGCCGCGGCGGCGACCGAGTGCCGGCTCACCGGACTAGGCACGATCAAGAG
ACGCACCAACC-AAAGCAAACGCCACCCATGCACAGTGCGCGTGCACGGCCACCTCACCGTCGTCTACGAGCTGCTGGAG
CTGGGGGGCTCAC---GCACCAGCCGGCCCCTCCACCACCTCCAGGTCCAGTACGATGAGGACGCGCCCCGGAGCTTCGA
CCGCACGTTCCTGCTCAACGACCCCAGGACCTTCTTCCGGAGCCGCTCGGCCTGCCGCGACGGGATCAACCAGATGCTCA
CGCGGACGCCGGCCCTCCGCGACTTCGACCTCGCCGCCGCCAACTGGGACGGCGGCTTCCTGCCCGACGACCTCGCCGGA
ACCATCACGGGGAGGGCCCGGCTCGACGAGGAAGGCCATCACGGCGGCAACGCGCCGCGCTTCAGCCTCGACCTGTCCCT
GACCGTCTTCGTGCGGGCCGTCTGCAGCGAGGCCAAGCTGCAGGCGCTCGCGTGCAGGGAGGCCACCGCCCAGTGTGGGC
TGTCCGTGGCGGACCGCTG-CTGCTGCTGCATATG--------TCAGGATCAGGATATCGCGGCTGCTGAGGGCGGCGGC
GACGACGAAGGCACCGTGAGGCTGCCATGCTCACACACGTTCCACGTCCGCTGGCTTGCGCGGTGGTTCGAGGCGGTGAC
GACGTGCCCCCTGTGCCGCCGTGACATGGTCGTCCACCTTGAGGCCGTCTACACACACGATCGAGAGCAAGGCCGTAACC
GAGAAACTAAAGGCCCTATACA--AGTATAAGATTGGACCCTGATTGCTAAAAGAACAAGTAATAAGTTCTTGTTCATTC
AGCATATAGACATTTCAGCT-AAAAAAGCATATAGATATTACAGTTTTCTCTCAGAATTATTGGAAATGCTAAAAGGGGA
GTGACG----GGGAAATGGCAATGTAATCATATACTTACAAAAGAAACTATTTTCATGTACATTTGATTCATTTCACTCC
ATAATCTGCCAAACTAACCAGCCAACACTTTCATCATCTCTCTTCGAGTATGTATATATGACGTTTGTGTTCACACAAAA
GAA--------------GAAGAACAAAAAAATCAACAAGGAAAAAAAAAAGGCCTGCACCAAGCATAGCCGGAGGGGCTC
AGTCGGAGTCGTCGCGGTCGTGCCAGCAGAGGAGCATGGACACGCACCGCCCCAGGATGTACAGCCTCGTCTTGTGCTGC
TTCAGCATGGCGCAGCACCTGCCCTGCCGCGG---------------CCGCCGGGAGCGCCTATGCTGCGG---CGCCGC
CGTCGTCGTGACGAGGTTGCTGTACGCCGTGCGGACGGAGTGGGGGACGGAGGCGGCCGGGAGCTCCATGTTTTGAGGCG
AGCGGGGCGTCGCGGCCTAACGAACGCGAGGATACGTCGAGACGTGTAGACAGAGTTCTGAGATGGACTGGTGCTG----
---------GGAGGAGAGCGATGAAGAATGATCGATGCCGGTAGTTAAATAGGCCCGGTCGGGTGGATGGATCAGCTGGT
CCA----------G---------------AGGTGGGGTGCATGTCAGCACGTGGCGGTGGGCCGGATTCGGTGGACTGGA
TGGTGACTGTGCAGTGACGATTTTGCCCTCGCGCATGTTGTTTTCCTTTATAAATCTCTTGCAATGTTAGCATAACATGA
CATTAATTTAGAAAAGATGGACTACTATGGATCATTCAAAACAATAATTTAGACACTTAAAGTATCAACATATTGTGCTA
TGTACAATAAAGGTAAATATCATACATATGTTAGTATCATATCTATATGCGTGATACTAATATCCG
>chr3D_1
AAAGATAGAAAAATCCTATGCAAAATACCAGCGCCTGTCCCTTTCCTTCGACACCACCGAGGCGGCCACCAAAGGGTAAA
AAGACAAATCACCTCTTCGCCCAAGCTCGACGCGGCTCCATCGCTGATCAGCAGCTTTACGGACCTCCAAAGTAGTTTGC
CAAAAGCAAAACCATAGCCGTTGAAAGAATCAGACCGGGGCAACATGTCCCCGGACACGCCATCGAACTTCAGAACTGAC
ACCCTCGCATGACG---A---CGACGTCGGAGAAGGAAACCAAAACTGCCCGCCTTCGACCACAGACCCAACACAAGATA
CTCCATCTTCCAGCTGTTACTTGCGTAGACAACCGCCTGCGCGTACTCCTGAACGACAAAACCTCCCTGCTCCACCATGA
CGTCGGAGACAACGCCACAGCAACGGAGACAGAGCAGAAGGAGAGACACACCTGATGGAGTCGCTGCCGCCGCCTCGTCA
ACACCATCCATGAACCCTAACGCTGTCGATCTGAGGGATCGACAAAGGCACGATGCCATCAACTCCGAGACGCCGCCATG
AAGAACACCGCCGGTGTGGGAGTGGGGTTGAGGCAGATTTATTCGTCCGGGCGCCGCTCCCACCACCCCAACGACGCACC
ACGACCTACAAATCCAAAACCTAACTACAGAGCAGAGGAACGGGGTCCCCCCTCCCTCCTGCCGCCGGAGCAGCGGCCGA
AGGGAGAGGGGGCCAGCGCACCGGCCGGTGGAGATCGGAGGAAAA-GAGTCGCCTCGCCCTAGTCGCCTGGTGGCGGCGG
CGGCTAGGGTAGGAAACG--------------------------------------------------------------
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>chr5B_1
AAAGATAAGAAAATCCTATGCAAAATACC--------------------------ACCGAAGCGGCCATCAAAGGGTAAA
AAGACAGATCACCTCTTCGCCCAAGCTCGACGCGGCTCCATCGCTGATCAGCAGCTTTACGGACCTCCAAAGTAGTTTGC
CAAAAGCAAAACCATAGCCATTGAAAGAATCAGACCGGGGTAACATGTCCCCGGACACGCCATCGAACTTCAGAACAGAC
ACCCTCGCATGACG---T---CGACGTCGGAGAAGGAAACCAGAACTGCCCGCCTTCGACCACAGACCCAACACAAGATA
CTCCATCTTCCAGCTGTCACTTGCGTAGACAACCGCCTGCGCGTACTCCTGAACGACAAAGCCTCCCTGCTCCACCATGA
CGTCGGAGACAACGCCACAGCAACGGGGACAGAGCAGAAGGAGAGACACACCTGATGGAGTTGCCGCCGCCGCCTCGTCA
ACACCATCCATGAACCCTAACGATGTCGATCTGAGGGATCGACATAGACACGATGCCATCAACTCCGAGACGCCGCCATG
AAGGACACCGCCGGTGTGGGAGTGGGGTTGAGGCAGATTTATTCGTCCGGGCGCCGCTCCCACCATCCCAACGACGCACC
ACGACCTACAAATCCAAAACCTAACTACAGAGCAGAGGAACGGGGTCCCCCCTCCCTACTGCCGCCGGAGCAGCAGTCGA
AGGGAGAGGGGGCCAGCGCACCAACCGGTGGAGATCGGAGGAAAAAGT---GCCTCGCCCTAGTCGCCTGGTGGTGGCGG
CGGCTAGGGTAGGAA-----------------------------------------------------------------
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------------------------------------------------------------------
>chr3B_32
-------------------------------------------------------ACCGAAGCGGCCACCAAAGGGTAAA
AAGACAGATCACCTCTTCACCCAAGCTCGACGCGGCTCCATCGCTGATCAGCAGCTTTACGAACCTCCAAAGTAGTTTGC
CAAAAGCAAAACCATAGCCGTTGAAAGAATCAGACTGGGGCAACATGTCCCCGGACACGCCATCGAACTTCAGAACTGAC
ACCCTCGCATGACG---A---CGATGTCGGAGAAGGAAACCAGAACTGCCCGCCTTCGACCACAGGCCCAACACAAGATA
CTCCATCTTCCAGCTGTCACTTGCGTAGACAACCGCCTGCGCGTACTCCTGAACGACAAAACCTCCCTGCTCCACCATGA
TGTCGGAGACAACGCCACAGCAACGGGGACAGAGCAGAAGGAGAGACACACCTGATGGAGTTGCCGCCGCCGCCTCGTCA
ACACCATCCATGAACCCTAACGTTGTCGATCTGAGGGATCGACAGAGACACGATGCCATCAACTCCGAGACGCCGCCATG
AAGGACACCGCCGGTGTGGGAGTGGGGTTGAGGCAGATTTATTCGTCCGGGCGCCGCTCCCACCACCCCAACGACGCACC
ATGACCTACAAATCCAAAACCTAACTACGGAGCGGAGGAACGGGGTCCCCCCTCCCTCCTGCCGCCGGAGCAGCGGTCGA
AGGGAGAGGGGGCCAGCGCACCGGCTGGTGGAGATCGGAGGAAAAAGT---GTCTCGCCCTAGTCGCCTGGTGGCGGCGG
CGGCTAGGGTAGGAA-----------------------------------------------------------------
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>chr5B_32
-------------------------------------------------------ACCGAAGTGACCACCAAAGGATAAA
AAGACAGATCACCTCTTCACCAAAGCTCGATGCGACTTCATCGCTGATCAACAGCTTTACGGACCTCCAAAGTAGTTTGC
CAGAAACAAAACCATAGCCGTTGACAGAATCAGACCGGGGCAACATGTCCCCGTACACGCCATCGAATTTCAGAACTGAC
ACCCCCGCATGACGATGA---CGACGTCGGAGGAGGAAACCAGAACTGGCATCCTTCGACCACAGACCCAACACAGGATA
CTCCATCTTCCAGCTGTCACTTGTGTAGACAACCGCCTGCGCGTACTCCTGAACGACAAAACCTCCCTGCTCCACCATGA
CGTCGGAGACAACGCCACAGCAACCGGGACAGAGCATAAGGAGAGACACACCTGATGGAGTCGCCGCCGCCGTCTCGCCA
ACATCATCCATGAACCCTAATGCTGCCGATCTGAGGGATCGACAGAGACACGATGCCATCAACTCCGAGACGCCGCCATG
AAAGACACCGCCGGTGTGGGAGTAGAGTTGAAGCAGATTTATTCGTCCAGGTGCCGCTCCCACCACCCCAACGACGCACC
ACGACCTACAAATCCAAACCCTAACTACAGAGCGAAGGAACGGGGTCCCCC-TCCCTCCTGCCGCCGGAGCAGTGGCCGA
AGGGAGAGGGGGCCAGCGCCCCGGCCGGTGGAGATCGGAGGAAAA-GA-TCGCCTCTCCCTAGTCGCCTGGTGGTGGCGG
CG-CTAGGGTAGGAAC----------------------------------------------------------------
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------------------------------------------------------------------
>chr5B_32
-------------------------------------------------------ACCGAACCGGCCACCAAAGGGTAAA
AAGACAGATCACCTCTTCGCCCAAGCTCGACGCGGCTCCATCGCTGATCAGCAGCTTTACGGACCTCCAAAGTAGTTTGC
CAAAAGCAAAACCATAGCCGTTGAAAGAATCAGACCGGGGCAACATGTCCCCGGACACGCCATCGAACTTCAGAACTGAC
ACCCTCGCATGACG---A---CGACGTCGGAGAAGGAAACCAGAACTGCCCGCCTTCGACCACAGACCCAACACAAGATA
CTCCATCTTCCAGCTGTCACTTGCGTAGACAACCGCCTGCGCGTACTCCTGAACGACAAAACCTCACTGCTCCACCATGA
CGTCGGAGACAACGCCACAGCAACGGGGACAGAGCAGAAGGAGAGACACACCTGATGGAGTTGCCGCGGCCGCCTCGTCA
ACACCATCCATGAACCCTAACATTGTCGATCTGAGGGATCGACAGAGACACGATGCCATCAACTCCGAGACGCCGCCATG
AAGGACACCGCAGGTGTGGGAGTGGGGTTGAGGCAGATTTATTTGTCCGGACGCCGCTCCCACCACCCCAACGACGCACC
ACAACCTACAAATCCAAAACCTAACTACAGAGCGGAGGAACGGGGTCCCCCCTCCCTCCTGCCGCCGGAGCAGCAGTCGA
AGGGAGAGAGGGCCAGCGCACCGGCCGGTGGAGATCGGAGGAAAAAGT---GCCTCGCCCTAGTCGCCTGGTGGCGGCGG
CGGCTAGGGTAGGAAAACG-------------------------------------------------------------
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------------------------------------------------------------------
>chr5D_32
-------------------------------------------------------ACCGAAGCGGCCACCAAAGGGTAAA
AAGACAGATCACCTCTTCGCCCAAGCTCGACGCGGCTCCATCGCTGATCAGCAGCTTTACGGACCTCCAAAGTAGTTTGC
CAAAAGCAAAACCATAGCCGTTGAAAGAATCAGACCGGGGCAACATGTCCCCGGACACGCCATCGAACTTCAGAACTGAC
ACCCTCGCATGACG---A---CGACGTCGGAGAAGGAAACCAGAACTGCCCGCCTTCGACCACAGACCCAACACAAGATA
CTCCATCTTCCAGCTGTCACTTGCGTAGACAACTGCCTGCGCGTACTCTTGAACGACAAAACCTCCCTGCTCCACCATGA
CGTCGGAGACAACGCCACAGCAACGGGGACAGAGCAGAAGGAGAGACATACCTGATGGAGTCGCCGCCGCCGCCTCGTCA
ACACCATCCATGAACCCTAACGCTGTCGATCTGAGGGATCGACAGAGACACGATGCCATCAACTCCGAGACGCCGCCATG
AAGGACACCGCCGGTGTGGGAGTGGGGTTGAGGCAGATTTATTCGTCCGGGCGCCGCTCCCACCACCCCAACGACGCACC
ACGACCTAAAAATCCAAAACCTAACTACAGAGCGGAGGAACGGGGTCCCCCCTCCCTCCTGCCGCCGGAGCAGCGGCCGA
AAGGAGAGGGGGCCAGCGCACCGGCCGGTGGAGATCGAAGGAAAA-GAGTCGCCTCGCCCTAGTCGCCTGGTGGCGGCGG
TGGCTAGGGTAGGAA-----------------------------------------------------------------
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>chr4B_32
-------------------------------------------------------ACTGAAGCGGCCACCAAAGGGTAAA
AAGACAGATCACCGCTTCGTCCAAGCTCGACGCGGCTCCATCGCTGATCAACAGCTTTACGGACCTCCAAAGTAGTTTGC
CAAAAGCAAAACCATAGCCGCTGAAAGAATCAGACCGGGGCAACATGTCCCCGGACACGCCATCGAACTTCAGAACTGAC
ACCCTCGCATGACG---A---CGACGTCGGAGAAGGAAACCAGAACTGCCCGCCTTCGACCACAGACCCAACACAAGATA
CTCCATCTTCCAGGTGTCACTTGCATAGACAACCGCCTGCGCGTACTCCTGAATGACAAAACCTCCCTGCTCCACCATGA
CGTCGGAGACAACGCCACAGCAACGGGGACAGAGCAGAAGGAGAGACACACCTGATGGAGTTGCCGCCGCCGCCTCGTCA
ACACCATCCATGAACCCTAACGCTGTCGATCGGAGGGATCGACAGAGACACGATGCCATCAACTCCGAGACGCCGCCATG
AAAGACACCGCCGGTGTGGGAGTGGGGTTGAGGCAGATTTATTCGTCCGGTCGCCGCTCCCACCACCCCAACGACGCACC
ACGACCTACAAATCCAAAACCTAACTACAGAGCGGAGGAACGGGGTCCCCCCTTCCTCCGGCCGCCGGAGCAGTAGTCGA
AGGGAGAGGGGGCCAGCGCACCGGCCGGTGGAGATCGGAGGAAAAAGT---GCCTCGCCCTAGTCGCCTGGTGGCGGCGG
CGGCTAGGGTAGGAAAACG-------------------------------------------------------------
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------------------------------------------------------------------
>chr1B_32
-------------------------------------------------------ACCGAAGCGGCCACCAAAGGATAAA
AAGACAGATCACCTCTTCGTCCAAGCTCGACGCGGCTCCATCGCTGATCAGCAGCTTTACGGACCTCCAAAGTAGTTTGC
CAAAAGCAAAACCATAGCCGTTGAAAGAATCAGACCGGGGCAACATGTCCCCGGACACGCCATCGAACTTCAGAACTGAC
ACCCTCGCATGACG---A---CGGCGTCGGAGAATGAAACCAGAACTGTCCGCCTTCGACCACAGACCCAACACAAGATA
CTCCATCTTCCAGCTGTCACTTGCGTAGACAACCGCCTGCGCGTACTCCTGAACGACAAAACCTCCCTGCTCCACCATGA
CGTCGGAGACAACGCCACAGCAACGGGGACAGAGCAGAAGGAGAGACACACCTGATGGAGTTGCCGCCGCCGCCTCGTCA
ACACCATCCATGAACCCTAACGTTGTCGATCTAAGGGATCGACAGAGACACGATGCCATCAACTCCGAGACGCCGCCATG
AAGGACACCGCCGGTGTGGGAGTGGGGTTGAGGCAGATTTATTCGTCCGGGCGCCGCTCCCACCACCCCAACGACGCACC
ACGACCTATAAATCCAAAACCTAACTACAGAGCGGAGGAACGGGGTCCCCCCTCTCTCCGGCCGCTGGAGCAGCAGTCGA
AGGGAGAGGGGGCCAGCGCACCGGCCGGTGGAGATCGTAGGAAAAAGT---GCCTCGCCCTAGTCGCCTGGCGGCGGCGG
CGGCTAGGGTAGGAAAACG-------------------------------------------------------------
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------------------------------------------------------------------
>chr6D_32
-------------------------------------------------------ACCAAAGCTTCCACCAAAGGATAAA
AAGACAGATTACCTCTTCACCCAAGCTCGATGCGACTCCATCGCTGATCAGCAGCTTTACGGACCTCCAAAGTAGTTTGC
TAGAAGCAAAACCATAGCCGTTGAAAGAATCAGACCGGGGCAACATGTCCCCGGACACGCCATCAAACTTCAGAACTGAC
ACCCCCGCATGACG---A---CGACGTCGGAGGAGGAAACCAGAACTGTCAGCCTTCAACCACAGACCCAACACAAGATA
CTCCATCTTCCAGCTGTCACTTGCGTAGACAATCGCCTGCGCGTACTCCTGAACGACAAAACCTCCCCGCTCCACCATGA
CGCCGGAGACAACGCCACATCAACGGGGGCAGAGCAGAAGGAGAGACACACCTGATGAAGTCGCCGCCGCCGCCTCGCCA
ACACCATCCATGAACCCTAACGCTACCGATCTGAGGGATCGACAAAGACACGATGCCATCAACTCCGAGACGCCGCCGTG
AAAGACACCGCCGGTGTGGGAGTGGAGTTGAGGCGGATTTATTCGTCCAGGCGCCGCTCCCACCACCCCAACGACGCACC
ACGACCACCAAATCCAAACCCTAACTACAGAGCGGAGGAGTAGGGTCCCCCCTCCCTCCTGCCGCCGGAGCAGCGACCGA
AGGGAGAGGGGGCCAGCGCCCTGGCCGGTGGAGATCGGAGGAAATAGA-TCGCCTCACCCTAGACGCCTGGTGGCGGCGG
CGGCTAGGGTAGGAAC----------------------------------------------------------------
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------------------------------------------------------------------
>chr2D_41
----------------------------------------------------------------GCCATCAAAGGATAAA
AAAACAGATCACCTCTTCACCCAAACTCGATGCGGCTCCATCGCTGATTAGCAGCTTTACAGATCCCCAAAGTAGTTTGC
CAGAAGCAAAACCATAGCCGTTGAAAGAATCAGACCGGG-CAACATGTCCCCGGACACGCCATCGAAATTCAGAACTGAC
ACCCCCGCATGACG---ACAGCGACGTCGGAGGAGGAAACCAGAACTGTCAGCCTTCGACCACAGATCCAACACAAGATA
CTTCATCTTCCAGCTGTCACTTGCGTAGACAACCGCCTGCGCATACTCATGAACGACAAAACCTCCCTGCTCCACCATGA
CGTCGGAGACAACGCCACAACAACGGGGACAGAGCAGAAGGAGAGACACACCTGATGGAGTCGCCGCCGCCGCCTCGCCA
ACACCATCCATGAACCCTTACGCTGTCGATCTGAGGGATCGACAGAGACACGATGCCATCAACTCTGATACGCCGCCATG
AAAGACACCGCCGGTGTGGGAGTGGAGTTGAGGCAGATTTATTCGTCCAGGCGCCGCTTCCACCACCCCAACGACGCACA
AAGACCTACAAATCCAAACCCTAACTACAGAGCGAAGGAACGGGG-CCCTCCTCCCTCCTGCCGCCGGATCAGCGGCCGA
AGGGAGAGGGGGCCAGCGCCCCGGCCGGTGGAGATAGGAGGAAATAGA-TCGCCTCTCCCTAGTCGCCTGGTGGTGGCGG
CG-CTAGGGTAGGAAC----------------------------------------------------------------
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>chr3D_812
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---------------------------------------------GATGCATCCTGCCAAAATGCCACGTTACGTATTGG
CCTCGGATGGA-TTCAGGACGGGAATTTTTGCTCTGTTTGCTCTTAGAATTGTTGAATCCGACCCGGATTCCTCAGAGAC
CGATGCGGCTATATCCAACGTTCCTGTACTCCCTGATCAGC-GGGCCGGGGAAGAAGGCCCGC-------------GATG
CCTCCGCCGTTGTGGGACATGCTGCCGCTGGCCGCGGCGGCGTCCGAGTGCTGGCTCACCGGATCAGGCACGATCAAGAG
ACGCACCAACC-AAAGCAAACGCCACCCGTGCACAGTGCGCGTGCACGGCCACCTCACCGTCGTCTACGGGCTGCTGGAG
CTGGGGGGTTCTTCATGCACCAGCCAGCCCCTCCACCGCCTCCAGGCCCAGCACGACGAGGACGCGCCCCGGAGCTTCGA
CCGCACGTTCCTGCTCGACGGCCCCAGGGCCTTCTTCCGGAGCCGCTCGGCCTGCCGCGACGAGATCCACCGGATGCTCA
CGCGGACGCCGGCCCTCCGCGACTTCGACCTCGCCGCCGCCCACTGGGACGGCGGCTTCCTGCCCGACGACCTCGCCGGA
ACCATCACGGAGAGGGCCCGGCTCGGCGAGGAGG---ATCACGGCGGCGACGCGCCGCGCTTCACCCTCGAGTTTTCCCT
GGCCGTCTTCGTGCGGGCCGTCTGCAGCGAGGCCAGGCTGCTGGCGCTCGCGTGCCGGGAGGCCACCGCCCAGTGTGGGC
TGTCCGTGGCGGACCGCTG-TTGCTGCTGCATATGTCAGGAACTCAGGATCAGGATATCGCGGCTGCTGAGGGCGGCGGC
GACGACGACGGCACCGTGAGGCTGCCATGCTCACACACCTTCCTCGTCCGCTGCCTTGCGCGGTGGTTCGAGACGGTGAC
GACGTGCCCCCTGTGCCGCCGCGACATGGGCGTCCACCTTGAGGCCGTCTACACACACGATCGAGAGCAAGGCCGTAACC
GGGAAACTAAAGGCCCTATACA--AGTATCAAATTAGGCCCTGATTACTACAAGAACAAGTAATAAGTTTTTGTTCATTC
AGCATATAGACATTTCAGTTAAAAAAAGCATATAGATATCACAGTTTTCTCTTAGTA-----------------------
---ACG----GGGAAATGGCAATATAATCATATACTTATAAAAGAAACT-TTTTCATGTACATTTGCTTGGTTTCATTCC
ATCATCTGCCAAACTAACCAGCCAATATTTCCAGCATCTCTCTTCGAGTGTG----TATGACGCTTCTGTTCACACACAA
AAGAACAATGACAAAATCAAGAAG------------------AAAAAAAAGGCCTGCACCAGACATAGCCGGAGGGGCTC
AGTCGGAGTCGTCGCGGTCGTGCCAGCAGAGGAGCATGGACACGCACCGCCCGAGGATGTACAGCCTCGTCTTGTGCTGC
TTCAGCATGGCGCAGCACCTGCCCTGCCGCGGG---CGCGGCGGCGGCCGCCGCGTGCGCCGATGCTGCGCCGCCGCCGC
CGTCGTCGTGACGAGGTTGCTGTACGCCGTGCAGACGGAGTGGGGGACGGAGGCGGCCGGGAGCTCCATGTTTTCAGACG
AGC-GGGCGTCGCGGCCTAACGAACGCGGGGATGCTTCGACACGTGT--AGAGAGTTTTGAGAGGCACTGGCACGGGGAG
TCTTGGTCTGGAGGAGAGCGATGAAGAAAGATCGATGCCGGTAGTTAAATAGGCCCGGTCGGGTGGATGGATCAGCTGGT
CCA----------GGGCCGGGCCCTAGTGAGGTGGGGTGCATGTCAGCACGTGGCGGTGGGCCGGATTCGGTGGACTGGA
TGGTTACTGGGCACTGACGATTTTGCCCTCTCGCATGTTGTTTT------------------------------------
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>chr3A_812
GATGA---------------------------------------------------------------------------
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--------------------------------------------------ATCCTGCCAAAGTGCCAAGTTATGCATTGG
CCTCGGATGGATTTCAGGACGGCAATTTTTGCTCTGTCTGCTCTCAC-ATTGTTGAGTCCGACCCGGATTACTCAGAGAC
CAATGCGGCTATATCAAACGTTCCTGTACTCCCTGATCAGCGGGGCCGGGGAAGAAGGCCCGC-------------GATG
CCTCCGCCGTTGAGGGACATGCTGCCGCTGGCCGCGACGGCGACCGAGTGCCGGCTCACCGGACTAGGCACGATCAGGAG
ACGCACCAACCAAAAGCAAACGCCACCCGTGCACAGTGCGCGTGCACGGCCACCTCACCGTCGTCTACG-----------
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---------------------------------------GAGCCGCTCGGCCTGCCGCGACGAGATCCACTGGATGCTCA
CGCGGACGCCGGCCCTCCGCGGCTTCGACCTCGCCGCCACCAACTGGGACGGCGGCTTCTTACCCGACGACCTTGCCGGA
ACCATCACGGAGAGGGCCCGGCTCGACGAGGAAGGCCATCACGGCGGCGACGCGCCGCGCTTCAGCCTCGACCTGTCCCT
GACCGTCTTCGTGCGGGCCGTCTGCA---------AGCTGCTGGCGCTCGCGTGCAGGGAGGCCGCCGCCCAATGTGGGC
TGTCCGTGGCGGACCGCTATTTGCTGCTGCATATG--------TCAGGATCAGGATACCGCGGCTGCTGAGGGCGGCA--
-ACGACGACGGCAACTTGAGGCTGCCGTGCTCACACACCTTCCACGTCCGCTGCCTTGCGCGGTGGTTCGAGAAGGTGAC
GACGTGCCCCCTGTGCCGCCGCGACATGGTCGTCCACGTTGAGGCCGCCTACGCACAC----GAGAGCAAGGCCGTGGCC
GAGAAACTAAAGGCCATATACAGGAGTATAAAATTGGACCCTGATTGCTAAAAGAACAAGTAATAAGTTTTTGCCCATTC
AGCATATAGACATTTCAGCTAAAAAAAGCATATAGATATTACAGATTTCTCTCATAATTATTGGAAATGCTAAAAAGGGA
GTAACGGGCCGGGAAATGGCAATGTAATCATATACTTATAGAAGAAACT-TTTTCATGTACATTTGCTTGGTTCCATTCC
ATAATCTGCCAAACTAACCAGCCAACACTTTCATCATCTCTCTTCGAGTATGTATATATGACGTTTGTGTTCACACAAAA
GAA--------------CAAGAAA------------------AGAAAAAAGGCCTGCACCAAGCATAGCCGGAGGGGCTC
AGTCGGAGTCGTCGCGGTCGTGCCAGCAGAGGAGCATGGAGACGCACCGCCCGAGGATGTACAGCCTCGTCTTGTGCTGC
TTCAGCATGGCGCAGCAGCTGCCCTGCCGCGGGCGCCGCGGCGGCGGCGGCCGGGAGCGCCGATGCTG------CGCCGC
CGTCGTCGTGACGAGGTTGCTGTACGCCGTGCAGACGGAGTGGGGGACGGAGGCGGCCGGGAGCTCCATGTTTTGAGACG
AGC-GGGCGTCGCGGCCTAACGAACGCGAGGATGCGTGGACACGTGTAGAGAGAGTTTTGAGATGGACTGGTGCTGGGAG
TCTGGGTCTGGAGGAGAGCGATGAAGAGAGATCGATGCCGGTGGTTAAATAGGCCCGGTAGGGTGGATGGATCTTCCAGG
GCCGGGCCCCCGTG---------------AGGTGGGGTGCATGTCAGCACGTGGCGGTGGGCCGGATTCGGTGAACTGGA
TGGTGACTGGGCACTGACGATTTTGGCCTCTCGCATGTTTTTTT------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>SNPs
--------------------------------------------------------------------------------
---------------------------S----S-----------------------------------------------
--------------------------------------------------S-----------------------S-----
------------S----------------------S--------------------------------------------
-------------S--------------------------S--------------S---------SS-------------
----------------S------S-------------------------S-----S--------------S---------
--------------------------------------S----S------------------------------------
--------S-----S---------S-------S----------------------S------------------------
-----S-----------------S-------------S-------------S----------------------------
------------------------------S----------------------------SSSS-----------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------
------------------------------------------------------S-------------------------
---S-----------------------S---------------S-------------------SSSSSSSSSSSSS----
---------S---S---------------S--------------------------------------------------
----------------------------S----------------------------------------S----------
--------S--SS------------S-----------S--------S----S----S-----------------------
----------------S---S-------S---------------------------------S----S---S--------
--------------------------------------------------------------------------------
----------S-------------------------------------S-------------------------------
-----------------------------------------S--------------------------------------
--------------------S-----------------------------------------------------------
--------S-----------------------------S--------------S------------------S-------
---------------------S----------------------------------------------------------
-------------------------------S-------------------------------------S----------
---------------------------------------------------------------------------S----
--S-----------------------------------S----------S----------------S--SS-----S---
--------------------------------------------------------------------------------
-----------------S-----SSSSSSSSSSSSSSSSSSS--------------------------------------
----------------------------------------------------S---------------------------
-------------------------------------------------------------S--------S---------
--------------------------------S--------------------------------------------S--
---S-----------------------------S------S---------S------S----------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
---------S---S----------------S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_593
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GCGTGGGAGTGAAGTTGAGA-----------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------
>reverse_2538
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------CTGAGATGGACTGGTGCTGG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
