>input_sequence_67926
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-----------------------------------------------------------ATGGCCGCCGCCGCCACTTCC
ATGGCCCGCAGG-TGCTCTCCCCTGC----------------------------CTCCTCATCTCCCACCGCCTCGCCTC
CCCCGGGTCCATCCCGCGCACCCCGGT---GTCGACGAAGGAGATGCTGCACCCCGTGGCCGTCGCCTCCTCGTAGC---
---TCCTCTTCCGCGGCGTCAGGGGCGCCAGGGGCATGGCGCGGCGGCCGGGGG---CCGACGGGTACTCCCCCACGCGG
GGCGGCGGCGG----GG-C-----CGGGACCGGGCGCCCACGGAGATGGCGCCGCTGTTCCCGGGCTGCGACTACGAGCA
CTGGCTGATCGTCATGGACAATCTCGGCGGCGAGGGTGACTCTAAGCACCAGATGATCGACTGCTACATCCACACCCTCG
CCAAGGTCCTCGGAAGGTACCCGTCCATCCATCCGGCCTCCTTCCCGTTGC--GAGAGCGGCTCAGCCAGACTCTCCCGC
TACTCGGAAATGAGTGACAAAGACTACAAATTTGAGTCTTGTTTGGGCTGGGAGGCCGGCTCAGTGTTGCTTTCTGTCA-
--AGTACTATTCATGGAAGCCTGATGATATGATGTTGCTCTGTCTCTGAATGTGTA-GCAGCAAGGAGGAGGCCAAGAGG
AAGATTTACAACGTCTCATGCCAGCGCTACTTCGGGTTCGGGTGCGAGATTGACGAGGAGACGGCCATCAAGCTTGAATG
TTTTCGTGTTATCCACATGTAAAATTACCAGAGCTAACAAACAT----GTCTGCTTCTCCTTTTGGTAGATGGGAGCATG
CCTAAGTACATCTGTTGGTTGTGCCGCAGGGATTCCTGGTGTTCTCTTTGTGCTCCCTGA--------------------
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>chr3A_1_TraesCS3A01G476100
TGCGGTCAAAACGGCGGGCATGACCGTTCGTAGCTAGTGGCTGAATCTTGGAA-TTTTTTGGTGTTAATCTGATTAAATA
GATACCTATGTACGTGGAAATGATTTTTGGAAAAAATATAGAGCAAACTATGAGGCAGCTGCAGTTCAAATTTGACCCGC
TTCCAGCTGAATCGGTGAAAATTTGTCTTTTTCGGCAGAGGTGGATCAAATTTTTTGACACCCAAACATTTGGTCAATTG
TGCATTAAACATGTCCTAGTATTTTATAAAATTGAGTATGTCCAATTTTGCAACAAATATATGATAGGTCCTTCACAAAA
AAAACTTATTTTGGGCACTAGAAAAATGGAAAATTGATTTTCTGTATT-AAAAAATAAAAACTCCCTTTGTCAATATTGT
TTGCCAATCCAAGATGTAAACTTATACAAAATATGGTATCATTTAAACATATATTTGATAGGTATTTTACAAAAAAAAAC
TCATTTGAACTCTTTAAATTCTTTGCTGCGTTGTGATTGGTCAATAGACATATCACGCAGATCATGCTCAAACACTGTTG
GATCTGCGAGCATCCAACGGCAGCCCTCACCCCCTCATCCTCTCACCCACGTAACCCTAACACAGCCGGCTCTCCTCTTC
CTCGCGTCCCCTTCTCTCCCACAGCCGCCAG-----------------CCCCGCCGCCGCCTCCCCGATCCACTTCTATC
CCTTTCCCCGATCACACCTCGCTGCCTCTCGCTGCTTGCCTGCAAGTCCCTCCGCCGTCGCCCCATCTCGCACCTCGACT
GCAAGTCCCTCCACCTTTGCCTCCTCTCGATCCCAGCCGGCAACGACCATCCCTCTCCACCGTAGCGTGCCCTCCTCCTC
CTCCTACTCGAGTCAGATCCGGACAGCCCAGCCTCGAATCCGTCCACACCCTTCCCTCCCCTCCACTGCTAAACCCACAT
AGGTCTCTGTCCCGGCTCGATCCCGAATTCCCCATTCCCCTCTCCCTATCTCTCTCTCCATGGCCGCCGCCGCCACTTCC
ATGGCCCGCAGG-TGCTCTCCCCTGC----------------------------CTCCTCATCTCCCACCGCCTCGCCTC
CCCCGGGTCCATCCCGCGCACCCCGGT---GTCGACGAAGGAGATGCTGCACCCCGTGGCCGTCGCCTCCTCGTAGC---
---TCCTCTTCCGCGGCGTCAGGGGCGCCAGGGGCATGGCGCGGCGGCCGGGGG---CCGACGGGTACTCCCCCACGCGG
GGCGGCGGCGG----GG-C-----CGGGACCGGGCGCCCACGGAGATGGCGCCGCTGTTCCCGGGCTGCGACTACGAGCA
CTGGCTGATCGTCATGGACAATCTCGGCGGCGAGGGTGACTCTAAGCACCAGATGATCGACTGCTACATCCACACCCTCG
CCAAGGTCCTCGGAAGGTACCCGTCCATCCATCCGGCCTCCTTCCCGTTGC--GAGAGCGGCTCAGCCAGACTCTCCCGC
TACTCGGAAATGAGTGACAAAGACTACAAATTTGAGTCTTGTTTGGGCTGGGAGGCCGGCTCAGTGTTGCTTTCTGTCA-
--AGTACTATTCATGGAAGCCTGATGATATGATGTTGCTCTGTCTCTGAATGTGTA-GCAGCAAGGAGGAGGCCAAGAGG
AAGATTTACAACGTCTCATGCCAGCGCTACTTCGGGTTCGGGTGCGAGATTGACGAGGAGACGGCCATCAAGCTTGAATG
TTTTCGTGTTATCCACATGTAAAATTACCAGAGCTAACAAACAT----GTCTGCTTCTCCTTTTGGTAGATGGGAGCATG
CCTAAGTACATCTGTTGGTTGTGCCGCAGGGATTCCTGGTGTTCTCTTTGTGCTCCCTGATTCCTATGTTGACCCTGAAC
ACAAGGACTATAGAGGTAATTCACTGTTTGGGCGTAGCACACCATAGAGCATAATACATGACAGCATTATTAGTGTATGA
AGCTGGTTAAGACATAAATGCATCAGGGCAAGGTGGCATCCACGAGCATG--------ATGTTTTTCCCCTGGTTGCATT
TAAATGAAATCAAATTGCTAAATAGGTAGCCATTGTTGGTATCTATAATTGCAGTGGTCAAACTGGAGTTCTGCTGTTTT
GATTTTCATGCTTGTGCTATAAATGTCGTGCTCTCATGTGCTCTGTTTGTTCGATCTCACTCTCTGACATTGGTTCACTA
ATGCTTGTCCATTAATCTAGAGTACAGTGAGCATGTATGTTGATGAATGTTAAAACCAACTTTAACTAGTGGTGCAAGTG
CAACTAGCTAGCTTGCATGCAAGATCTCAGATAGATGGGTCTCCTAGTTTCATGACTGCTATTTAGAACTAAGTGCTCCG
TAAGTGTTTGTTGAAAATGAAACTGCAGTTAACTATAGCACAGTGAGAGTGCTCTCAAACGTCAGAAAGGCTGCTATTGC
ATTTACATTGCTGGTAGTGTCCTGCATTGACCGATGGTGCTGCCATATACCCCTGTCAGTACCTGATTGTTCTCACCCAT
TATTGTGTAGCAGCGCCTTCTTGTTCATATCCATTTTTTTTCAATTAATGCCAACATCTACATATACCCCTGCTAGAAAC
TAAGAATGTTCATAGTAATTTGAAAAGTATCTCATGCTTGATGCTTATACACTTGCATACACATCCCTCCTCCTCTTC--
----TCTTCTTCCTCCCATTGTCTCCCCTAATCTGATGTGTGTGTGCATTTATTTTTGCAGGTTCGTGAAGAGGCCAATC
TAGTGTTGTGAAAGAAGGGGGCTGGCCATGGAGAAGATCCCGCGGCCAGCTCCTCAGGGTAGGTTATCCCACAGATCTCC
TCAATTGGGATGTGAAGATGCAGAACTTCTGTTT
>chr4B_1
TGCGGTAAAAACGGCGGGCTTGACCGTTCGTAGCTAGTGGTTGAATATTGGAATTTTTTTGGTGTTTCTCTGATAAAATA
GATACTTATGTACCTAGAAATGATTTTTTGAAAAAATAAACAGCAAACTATGAACCAACTGTAAATCAAATTTGACCCGC
TTCCAACTGAATCGGCGGGAATTTGTCTTTTTCACCAAAGGTGGATCAAAACTTTTGACACCCAACCATTTAGTCAATTA
TCCATTAAACATGGCCTAGTATTTTTGAAAATTGATTTGGTCCAATTTTACAACAAACATATTATAGGTCCTTCACAAAA
AAT-CTTACTTTGGGCACTAGAAAAATGGAAAATTGATTTTCCGTGTTAAAAAAATAAAAACTCCCTTTATCAATATTGT
TTTCCAATCCAAGATGTAAACTTGTGAAAAATATGATATCATTTGAACATATATTTGATAAGTATTTTACAAAAAAAACT
CATTTTGAACTCTTTAAATTCTTTGTTGCGTTGTGATTGGTCAATAGACATAGCACGCGGATCATGCTCAAACACCGTTG
GATCTGCGAGCATCCAACGGGAGCCCTCACCCCCTCATCCTCTCACCCACGTAACCCTAACACAGCTGGCTCTCCTCTTC
CTCGCGTCCCCTTCTCTCCCACACCGCCAGCCCCTCGCTCCCTCTGATCCCCGCCGTCGCCTCCCCGACCCACTTCTATC
CCTTTCCTCGATCACACCTCGCTGCATCTTGCAGCTTGCCTGCAAGTCCCTCCGCCGTCGCCCCATCTCGCACCTCGACT
GCAAGTCCCTCCATCGTCGCCTCCTCTCGATCCCAGCCGGCGACGACCACCCCTCTCCGCCGTAGTATGCCCTCCTCCTC
CT---ACTCGAGTCAGATCCGGACACCCCAGCCTCGGATCTGTCCGCACCCTACCCTCCTCTCCACTCCTAAACCCACAT
AGGTCTCTGTCCCGGCTCGATCCCGAATTCCCCATTCCCCTCTC--TATCTCTCTCTCCATGGCCGCCGCCGCCGCTTCC
ATGGCCCGCAGGATGCTCTCCCCCGC----------------------------CTCCTCATCTCCCACCTCCTCGCCTC
CCCCTGGTCCATCCCGCACGCCCTGGT---GGCGGCGAAGGAGATGCTGCGCCCTGCAGCCGTCGCCTCCTCGTCGC---
---TCCTCTTCCGTGGCGTCGGGGGCGCCAGGGGCATGGAGCGGCGGCCGGGGG---CCGTTGGGTACTCCCCCGCACGG
GGCGGCTGCGG----GTCC-----GGGGACCGGGCGCCCACGGAGATGGCGCCGCTGTTCTCGGGCTGCGACTACGAGCA
CTGGCTGATCGTCATGGACAGGCCCGGCGGCGAGGGCGCCTCCAAGCACGAGGTGATCGACTGCTACATCCACACCCTCG
CCAAGGTCCTCGGAAGGTACCCGTCCATCCATCCGGCCTCCGTCCCGTTGC--GAGAGCGGCTCAGTCAGACTCTCTCGC
TACTCGGAAATGAGTGAAAAAGACTACAAAATTGAGTCTTCTTTGTGCTGGGAGGCCAGCTCAGTGTTGCTTTCTGTCA-
--AGTACTGTTCATGCAAGCCTGATGATATGATGTTGCTCTGTGTCTGGATGTGTAGTG-GCAAGGAGGAGGCCAAGAGG
AAGATTTACAACGTCTCATGCAAGCGCTACTTCGGGTTCGGGTGCGAGATTGACGAGGAGACGGCCATCAAGCTTGAATG
TTTTCGTGTTATCCACATGTAAAATTACCAGAGCTAACAAACAT----GTCTGCTTCTCCTTTCGGTAGATGGGAGCATG
CCTAAGTACATCTGTTGGTTGTGCCGCAGGGATTCCTGGTGTTCTCTTTGTGCTCCCTGATTCCTATGTTGACCCTGAAC
CCAAGGACTATAGAGGTAATTCACTGTTTGGGCGTAGCACACCACAGAGCATAATACATGACAACATTATTAGTGTATGA
AGCTGGTTAAGACATAAATGCATCAGGGCAAGGTGGCATCCACAAGCATTCTTACCTCATGTTTTTTCCCTGGTTGCATT
TAAATGAAATCAAATTGCTCAATAGGTAGCCATTGTTGGTATCTATAATTGTAGTGGTCAAACTGGAGTTTTGCTGTTTT
GATTTTCATGCTTGTACTATAAATGGCGTGCTCTCATATGCTCTGTTTGTTCGATCTCACTCTCTGACATTGGTTCACTA
ATGCTTGTACATTAGTCCAGAGTACAGTGAGCATGTATGTTGATGAATGTTAAAACCAACTTTAACTAGTGGTGCAAGTG
CAACTAGCTAGCTTGCATGCAAGATCTTAGATAGATGGGTCTCCTAGTTTCATGACTGCTATTTAGAACTAAGTCCTCCG
TAAGTGTTTGTTGAAAATGAAAATGCAGTTCACTATAGCACAGTGAGAGTGCTCTCAAACGTCAGAAAGGTTGCTATTGC
ATTTACGTTGTTGGCAGTGTCCTGCATTGACCGATGGTGCAGCCATATACCCCTGCCAATACCTGATTGTTCTCATTCAT
TATTGTGCAGCAGCGCCTTCTTGTTCATATCCA--TTTTTTCAATTAATGCCAACATCTACATATACCCCTGCCAGAAAC
TAAGAATGTTCATAGTAATTTGAAAAGTATCTCATGCTTGATGCTTATACACTTGCATACACATCCCTCCTCCTCCTCTT
CTCTTCTTCTTCATCCCCTCGTCTCCCCCAATCCGATGTGTGTGTGCATTTATTTTTGCAGGTTCGTGAAGAGGCCAATC
TGGTGTTGTGAAAGAAGGGGGCTGGCCATGCAGAAGATCCCGCGGCGAGCTCCTCGGGGTAGGTTATCCCACAGATCTCC
TCAATTGGGATGTGAAGATGCAGAACTTATGTT-
>chr6D_931
TAAACCCCCCG---------------------------------------------------------------------
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-------------------------------------------------------------------------------T
AGGTCTCCGTCCCGGCTCGATCCCGAATTCCCCATTCCCCA-TC--TCCCTCCCTCACCATGGCCGCCGCCGCCG---CC
ATGGCCCGCAGGCTGCTCTCCCCCACCACCACCTCCCACTCGACCACCGCCCGCCTCCTCGTCTCCCGCCGCCTCGCCTC
CGCCCCGTGCTTCCCGCGCGCCCCGGCGGCGGCGGCGAAGGAGATGCTGCGCCCGGCGGCCGTCGCCTCCTCGTCG---G
CCTTCTTCCTCCGCGGCGCCGGGGGCGCCAGGGGCATGGCGCGGCGGCCGGGGGGCGGCGACGGGTACGCCCCCGCGCGG
GG----------------C-----GGGGACCGCGCGCCGACGGAGATGGCGCCGCTGTTCCCCGGGTGCGACTACGAGCA
CTGGCTGATCGTCATGGACAAGCCCGGCGGCGAGGGCGCCTCCAAGCACCAGATGATCGACTGCTACATCCACACCCTCG
CCAAGGTCCTCGGCAGGTACCCGTCC--------AGCCTCTATCCCGTTGTCTGAGAGCGGCTCAGCCTGTCTCGCTCGC
TGCTAGGAAACGAGTGGCAAAGACTCCAAATTTGAGTCTTGTTTGGGTTGGAAGACTAGTTCCGCGCTAGTTTCTGTCA-
--AGTATCGTTCGTGTAAGCCTGATGAACTAATATTGTTCTATCTTCGGATGTTGTGGCAGCGAGGAGGAGGCCAAGAGG
AAGATTTACAACGTCTCGTGCGAGCGCTACTTCGGGTTCGGGTGCGAGATCGACGAGGAGACATCCAACAAGCTTGAAGG
TTTACCTGTTATCCACATCTAAATTTACGAGAGCTGACCTGTC-------CTGCTTCTCCTTTCGGTAGATGGCAGCCTG
TCTAAATACATCCGTTGGTTGTGCTGCAGGGATTCCTGGTGTTCTGTTTGTACTCCCCGATTCCTATGTTGACCCTGAAC
ACAAGGACTATGGAGGTAATTC----------------------------------------------------------
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>chr6B_1041
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-------------------------------------------------CCCGCCTCCTCATCTCCCGCCGCCTCGCCTC
CGCCCCGATCATCCCGCGCGCCCCGGC---GGCGGCGATGGAGCTGCTGCGCCCGGCGGCCGTCGCGTCCTCCTCGTCGT
CCCTCCTCCTGCGCAGCGTCGGGGGCGCCAGGGGCATGGCGCGGCGTCCCGGGGGCGGCGACGGGTACTCCCCCGCGCGG
GGCGGGGGCGGAGGCGG-C-----GGGGACCGCGCGCCGACGGAGATGGCGCCGCTGTTCCCCGGGTGCGACTACGAGCA
CTGGCTGATCGTCATGGACAAGCCCGGCGGCGAGGGCGCCTCCAAGCACCAGATGGTCGACTGCTACGTCCACACCCTCG
CCAAGGTCCTCGGCAGGTATGTACCCGTCCATCCGGCCTCCATCCCGTCGC--GAGAGCGGCTCAGCCTGTCTCGCTCGC
TGCTCGGAAATGAGTGGCAAAGACTGCAAATTTGAGTCTTGTTTGGGCTCGAAGGCTAGCTCAGTGTTACTCTATGTCAA
GTAGTATTGTTCATGTAAGCCTGACGGTCTGATGTTGTTCTGTCTCCGAATGCTGTGGCAGCGAGGAGGAGGCCAAGAGG
AAGATTTACAACGTCTCGTGCGAGCGCTACTTCGGGTTCGGGTGCGAGATCGACGAGGAGACATCCAACAAGCTCGAAGG
TTTTCGTGTTATCCACATCTAAAATTACCAGAGCAGACAAACTTGTCGGTCTGCTTCTCCTTTCGGTAGATGGGAGCATG
TCTAAATACGTCTGTTGGTTGTGCTGCAGGGATTCCTGGTGTTCTCTTTGTGCTCCCTGATTCCTATGTTGACCCAGAGC
ACAAGGACTATGGAGGTAATTC----------------------------------------------------------
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>chr6A_1045
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------------------------GC----------------------------CTCCTCATCTCCCGCCGCATCGCCTC
CGCCCCGTCCATCCCGCGCGCCCCGGCCGCGGCGGCGAGGGAGATGCTGCGCCCGGCGGCCGTCGCCTCCTCGTCC---T
CCTTCCTCCTCCGCGGCGCCGGGGGCGCCAGGGGAATGGCGCGGCGGCCGGGGG---GCGACGGGTACTCCCCCGCGCGG
GGCGGGGGCGGGGGCGGGGGCGGAGGGGACCGCGCGCCCACGGAGATGGCGCCGCTGTTCCCCGGGTGCGACTACGAGCA
CTGGCTGATCGTCATGGACAAGCCCGGCGGCGAGGGCGCCTCCAAGCACCAGATGATCGAGTGCTACGTCCAGACCCTCG
CCAAGGTCCTCGGAAGGTACC----CATCCGTCCAGCCTCTATCCCGTCGC--GAGATCGGCTCAGGCAGTCTCGCTCAT
TGCTCGAAAATGAGTGACAAAGACTACAAATTTGAGTCTTGCTTGGGTTGGAAGACCAGCTCAGTGTTACCTTCTGTCAA
GTAGTATTGTTCATGTAAGCCTGATGATATGATGTTGCTCTGTCTCTGAATGTTGTCCCAGCGAGGAGGAGGCCAAGAGG
AAGATTTACAACGTCTCGTGCGAGCGCTACTTCGGGTTCGGGTGTGAGATTGATGAGGAGACATCCAACAAGCTTGAAGG
TTTTTTGTGCTTATTAACTACATTGA---AAACCAGTCATGAG-------CTGTTTCTCCTTCTGTGTATTTTTTAATTA
TGTATGG------------TGTACTGCAGGGATTCCTGGTGTTCTGTTTGTACTCCCCGATTCCTATGTGGACCCTGAAC
ACAAGGACTATGGAGGTAATTC----------------------------------------------------------
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>SNPs
-------------------S--------------------S-----S-------------------SS------S-----
-----S-------S-S------------S---------S-S------------SS--S---S-SS---------------
-----S---------S-SS--------------SS--S------------SS-------------S-----S-------S
-S-----------S-----------SS--------S-SS----------S-------S----S-----------------
--SS----S---------------------------------S--S-----------------------S----------
--S--------------------S-SS--------S--------S---------------S-----------------SS
SSS----------------------S--------------------------S-----S----------------S----
--------------------S---------------------------------------------S-------------
-----------------------S-SS-SSS-------------------------S-----------S-----------
-------S-----------------S---S--S-----------------------------------------------
-------------S-S-S-----------------------S-------S--------S------SS-------------
--SSS--------------------S----------S---S----S------S------S-------S------------
--------------------------------------------SS----------------------------S-----
-----------------------S--------------------------------------------------------
----S--------------S-----------S--S---------------S---S-S-----------------S-----
--------------------S-----------------------------------------------------S-----
------------------------S-------------------------------------------------------
---------------------S-S------------S-S---S-------------------------------------
-----------------------------------------S----------------------------------S---
---------------------------------------------------------S----------------------
--------S------S----------------------------------------------------------------
---------------------S----------------------------------------------------------
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--------------------------------------------S------------------S----------------
-------------------------------------------S-----S----------------S-------------
-------------------S-------------------------------S------------------S---------
---------------S---------S-----------S------------------------------------------
--------S-----S--S--------------------------------------------------------------
---------------------------S----------------------------------------------S-----
----------------------S-------S---------------------------------------S---------
------S---S---S-------------------------S--------------S--S----------------SS---
-------S-------------------------SS--------------------------------------S------
---------------------------------------------------------------------------S----
------------S----S-S--------S----S----------------------------------------------
-S----------------------------S---------------S--------S------------------------
----------------------------S----S
>forward_142
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------------------------------------------GCAAACTATGAGGCAGCTGC------------------
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>reverse_2186
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-------------------------TCGTGCTCTCATGTGCTCTG-----------------------------------
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