>input_sequence_67894
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----------------------------------ATGAACGGCGAGATGATGATGCGGCCTCCCATGCCTGCGCCGTACC
AGGTGTGGGCGGCGGCGCTGGCGCAGCAGCAGCAGCAGCAGCAGCTCCCGCCGGTGGCCGTGGCGGAGGCGCCGCCGGCG
GGGTTCAAGCCGGCGAGGCCCGCGTGGAAGCGGGCGGCGCGGCAGCAGCCCGGGTGGAAGCAGCGCAAGGCCGCGGCCCA
GGCGCAGGGGAGGTGGGGCGGGTCGGCGGCGCCGCGCAACACGACGTCGTACCTGATCCGGGCCAAGCGGGCCGGGGGCG
TGGCGTCGCTGGTGTCGCCGTGCCCCGTGACGCCCGCCGTGCTGCCGACGCCGCGGCTGTCGCCGGCGCGGGAGGTGCTG
GTGGAGATGGCCAAGGAGGCGTGGGGCGTCGACGGGTACGGCTCTATGAAGGGCCTCATCCGCCTCCGCCCCCAGGCCGC
CGGCCCCGACGCCGGCGACGGCGACGGCGCTGACTCGGGCTCCGGCGAGAGCGACGTGGAGGAGCACGTGGAGGTGGAGC
GCCGCCTCGACCACGACCTCAGCCGCTTCGAGATGGTGCAGCTCCCCGCCGCGCCCGCCGGCGAGGACGACGAGGACGAG
GA---------CGCCCGCGCGGCCCGGCTGGAGGAGGAGAACCTGACCCTCCGCGCGCGGCTCTTCCTGGTGGAGCGCGA
CATGGCCGACCTCCGCCGCCGCCTCGTCGCCGTCGAGTCCCTCTGCCGCGACCGCCACCGCGACGGCTGCGTCGTCGACG
CCGCCCTGCCGCCCCCCTCCAACAGCGACGAGGCGGACGCCACCGAGGACGCCATGGTACTCTGA---------------
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>chr5B_1_TraesCS5B01G357400
ACCTTTTAAACGCTTGCCAACAACCC-TTTCTTGACGAGTCAGATGAATGATTTTATCAACCTTGACGTTTACACCCAGT
AGCAAATACGCTAACTATCTCCATAGGAGAGTTTCGAAGCCAACAAGCAGTTCACTTTACAAAGGACCCATGTGTGCAAG
GGTAAGACGAACTACATTCACACGCCTACTTAATTTGTACTAAGCTAATGTTCCTTCCCCGAGACAACAAACCTTTGATC
TCATTCACCTGGTTCGCGTGTTGCGATATATCAATGCCATGTGCTTTCACTATATCAATCGGCTCGCTGCCATCATCAAA
GGACGGTTGGACCAGTGAAGGAACATAAGCATCACTGGTCACCGCTAAATACAGTCTCACGAATAGCATCCCCAATGAAG
AATTTCGCAAGGTACAAGACAAAGATGCAAAGCATAAACAACACATAACTAAAAGA---AGAAGAAAAGATGAC-----A
GCCCAAAGCAAAGCGAAAAACACAAGCGCAC-------CCTTTTTTGTAAGCGATGAAGAACCAAACCGCCGCACCTATC
TTGCGGTTCTTGGCTTTGAAGTGCCCAAGCGCCCAACCAAAGCCGCGAGG----ATGGATGGATGGATGCGTCTCGCGGC
GGCACACCCCCTGCTGTCCGTCCAAGACACGCAACCGCTGGCGCGATCCAGGCCGTCCGCGCCTGGGGGCCACGGATCCG
GCCGTCCGACGCGCGCCCGCCCCCTTTATATACCCCGGGACCCCTTCCCCTCTGCCCTGCCTACGCCGTCTCTCTGTCCT
GTCCTTTC------------------------------------------------------------------------
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-------------------------------------TCCTCCATCTCCAACCTCCCCCTCC-CCT---CTCCCCAAATT
TGGATCAAACGAACTCGCTAAACTTAATCTCATCCTTAAACGCGCGGCGAACGGAATCGGATTTTGGGAGGGACGGGAGG
CGTTTGGATCCCATTTTGGGCGGGGGCTAATCGCGGTAAGCAGCGAGTGATTTGGGTCGGGGTTAGGGTTTCGGATCTGG
TCA---------------------TAATCCGGCGATGAACGGCGAGATGATGATGCGGCCTCCCATGCCTGCGCCGTACC
AGGTGTGGGCGGCGGCGCTGGCGCAGCAGCAGCAGCAGCAGCAGCTCCCGCCGGTGGCCGTGGCGGAGGCGCCGCCGGCG
GGGTTCAAGCCGGCGAGGCCCGCGTGGAAGCGGGCGGCGCGGCAGCAGCCCGGGTGGAAGCAGCGCAAGGCCGCGGCCCA
GGCGCAGGGGAGGTGGGGCGGGTCGGCGGCGCCGCGCAACACGACGTCGTACCTGATCCGGGCCAAGCGGGCCGGGGGCG
TGGCGTCGCTGGTGTCGCCGTGCCCCGTGACGCCCGCCGTGCTGCCGACGCCGCGGCTGTCGCCGGCGCGGGAGGTGCTG
GTGGAGATGGCCAAGGAGGCGTGGGGCGTCGACGGGTACGGCTCTATGAAGGGCCTCATCCGCCTCCGCCCCCAGGCCGC
CGGCCCCGACGCCGGCGACGGCGACGGCGCTGACTCGGGCTCCGGCGAGAGCGACGTGGAGGAGCACGTGGAGGTGGAGC
GCCGCCTCGACCACGACCTCAGCCGCTTCGAGATGGTGCAGCTCCCCGCCGCGCCCGCCGGCGAGGACGACGAGGACGAG
GA---------CGCCCGCGCGGCCCGGCTGGAGGAGGAGAACCTGACCCTCCGCGCGCGGCTCTTCCTGGTGGAGCGCGA
CATGGCCGACCTCCGCCGCCGCCTCGTCGCCGTCGAGTCCCTCTGCCGCGACCGCCACCGCGACGGCTGCGTCGTCGACG
CCGCCCTGCCGCCCCCCTCCAACAGCGACGAGGCGGACGCCACCGAGGACGCCATGGTACTCTGACGTGGCCGCCGCCGC
CCCTGGCCGGCCGCCCGCACCGTGCCCTGTACATAGTTCACCGTCCCTTCCTCCTCCTCCC---CTCTGTGCAGGTGTCA
ACAGACAGACAGATGTGAATGAAGAGTAGCCAGCAGCATCAGCATCAGCATCAGAAGCAGCAGTTCAATTAGCATCCCAG
AACCAGTCATCACTCTTCCTCCCTTCCCTCCTTGAATCCCCATAGCAGTTCGATCTGTAGTTGTGTCATCAGGTAGCCAG
GT--CCATTCCATGTC---CATGTCCTCGTAGCAGCATTAGGAGTCAACCAAACCAATCCAAGCAAGCAATGTGTTCATG
TAGATGTATTAGCGGTTAAT---CGGCGTCAATGGCGGGCACCGGCGA---------AGAAGACGCGGG----GCGTTCC
TCTAG----ATCCAGTGCCTACCAAAGTCGGCATACAACTCCAGTCATTAGTCAGTACTAGCAGTAGCATTTGTTGTGAT
TCTGAACATATTGTTGCTCCATTATTGCATTCTGCATTCTGTACCATTCTGTGCGCGTCCATGCTCACCAGATGCTTGGC
CATTGGCAGGGAGGGGACAGGCAGCGGCGGCGAGACCCATGGATGATGGATCCAGCAGCCGTGGGAGTTTTATACTACTA
TACTACTATATTTTTTTGTTTTATTTTATTTAGTTTTTGCTGTGCTTGCGTG------------CGTGTGTGCGTGCGGT
TTTGGCGAGACGTGGCGTGACCAGTGGGACTCGCTCCTGTGGACGCGGGGGTGGGGTGGGGTGGGGTGGTGGACGGTGCG
TTGAG-TGCGGCGCGGCTTGGTAGGTCGGTCAGGTCAGGTCCGGGCAACCTGATTGCCATTCTGAACTG------GGTGG
TGGTGATGGTGGTGGTGGGGCGGGTCCGAGGAAGAGGATGACCGACC----GGGAGGCGAGTGGTTGGGCTGGGCGCTGT
GGCGTTGGCAATGGCGATGTGACGACAGAATCTTGGCATCTTGTGTGGAGAAGATGCTGCCGGGCCATCCAGGAGT
>chr5D_1
ACCTTTTAAACGCTTGCCAATAACCCTTTTCTTGACGAGTCAGATGAATGATCTTATCAACCTTAACGTTTACATTCAGT
AGCAAATATGCTAACTATCTTCATAGGAGAGTTTCGAAGCCAACAAGCAGTTCACTTTACAAACGACCCATGCGTGCAAG
GGTAAGACGAACTACGTTCACACGCCTAGTTAATTTGAACTGAGCTAATGTTCCTTACCCGAGACAACAAACCTCTGACC
TCATTCACCTGGTTCGCGTGT------------------TGTGCTTTCACTATATCAATCGGCTCGCTGCCACCATCAAA
GGACGGTTGGACCGATGAAGGAACGTAAGCATCACTGGTCAGCGCTAAATACAGTCTCACGAATAGCATCCACAAAGAAG
AATTTCGCAAAGTACAAGAAAAAGATGCAAAACATAAACAACACATAACTGAAAGAAGAAGAAGAAAAGATGAC-----A
ACCCAAAGCAAAGCGAAAAACACACCCGCAC-------CCTTTTTTCTAAGCGATGAAGAACCAAACCGCCGCACCTATC
TTGCGGTTCTTGGCTTTGAAGTGCCCAAGCGCCCAACCAAAGCCGCGAGGATGGATGGATGGATGGATGCGTCTCGCGGC
GGCACAACCCCTGCCGTCCGTCCAAGACACGCAACCGCACGCGCGATCCAGGCCGTCCGCTCCTCGGGGCCGCGGATCCG
GCCGTCCGACCCGCCTCGACCTCCTTTATATACCCCAGGACCCATCCACCG--GCCCTGCCTACGCCGTCTCTCTGTCCT
GTCCTTTC------------------------------------------------------------------------
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-------------------------------------TTCTCCAACTCCAACCTCCCCCTCT-CCTCCCCTCCCCAAATT
TGGATCAAACGAACTCGCTAAACTTAATCTCATCCTTAAACGCGCGGCGAACGGAATCGGATTT-GGGAGGGAC--GAGG
CGTTTGGATCCCATTTTGGGCGGGGGCTAATCGCGGTAAGCAGTGGGTGATTTGGGCCGGGGTTAGGGTTTCGGATCTGG
TAA---------------------TAATCCGGCGATGAACGGCGAGATGATGATGCGGCCTCCCATGCCGGCGCCGTACC
AGGTGTGGGCGGCGGCGCTGGCGCAGCAGC---------AGCAGCTCCCGCCGGTGGCGGAGGCGCCGCCGG---CGGCG
GGGTTCAAGCCGGCGAGGCCCGCGTGGAAGCGGGCGGCGCGGCAGCAGTCCGGGTGGAAGCAGCGCAAGGCCACGGCCCA
GGCGCAGGGGAGGTGGGGCGGGTCGGCGGCGCCGCGCAACACGACGTCGTACCTGATCCGGGCCAAGCGGGCGGGTGGCG
TGGCGTCGCTGGTGTCGCCGTGCCCCGTGACGCCCGCCGTGCTGCCGACGCCGCGGCTGTCGCCGGCGCGGGAGGTGCTG
GTGGAGATGGCCAAGGAGGCGTGGGGCGTCGACGGTTACGGCTCCATGAAGGGCCTCATCCGCCTCCGCCCCCAGGCCGC
CGGCCCCGACGCCGGCGACGGCGAC---------TCGGGCTCCGGCGAGAGCGACGTGGAGGAGCACGTGGAGGTGGAGC
GCCGCCTTGACCACGACCTCAGCCGCTTCGAGATGGTGCAGCTCCCCGCCGCGCCGGCAGGCGAGGACGA---------G
GA---------CGCCCGCGCGGCCCGGCTGGAGGAGGAGAACCTGACCCTCCGCGCGCGGCTCTTCCTGGTGGAGCGCGA
CATGGCCGACCTCCGCCGCCGCCTCCTCGCCGTCGAGTCCCTCTGCCGCGACCGCCACCGCGACGGCTGCGTCGTGGACG
CCGCCCTGCCTT---CCCCAACCAGCGACGAGGCG---GCCACCGAGGACGCCATGGTACTCTGACGTGGCCGCCGCCGC
C----GCCGGCCGCCCGCACCGTGCCCTGTACATAGCCCACCGTCCCTT---CCTCCTCCAACACCCTGTGCAGGTGTCA
ACAGACAGACAGATGTGAATGAAGAGTAGCCAGCAGCATCACAATCAGCATCAG------CAGTTGAATTAGCATCCTAG
AACCAGTTGTTACTCTTCCTTCCT----TCCTTGAATCCCCATAGCAGTCCGATCTGTAGTTGTGTCAT----TAGCCAG
ATCCCCATTTCGTGTC---CATGCAGTCGTAGCAGCATTAGGAGTCAACCAAACCAAG-CAAGCAAGCAAGGTGTTCATG
TAGATGTA---GCGGTTAATCGGCGGCGTCAATGGCGGGCACCGGCGAGGAAGACGAAGAAGACGCGGG----GCGTTCC
TCCAG----ATCCAGTGCCTGCCAAACTCGGCAAACAACTCCAGTTATTAGTCAGTAGTAG---TAGCATTTGTTGTGAT
TCTGAACATGTTGTTGTTCCATTATTGCA--CTGCATTCTGTTCCATTCTGTGTGCTCCCGTGCTCACCAGATGCTTGGC
CATTGGCAGGG----GACAGGCAGCGGCGGCGAGACCCATGGACGATGGATCCAGCAGCCGTGGGAGTTTTATACTACTA
CTATACTGCTGTTTTTTATTTTATTTTATTTAGTTTTTGCTGTGCTGGCGTGCGTGCGTGCGTGCGA------------T
TTTGGCGAGACGTGGCGTGACCAGTGGGACTCGCTCCTGTGGATGCGGGGGGTGGGGGTGGC---------GACGGTGCG
TTGAG-TGCGGCTCGGCTCGGTAGGTCGGTCAGG-CAGGTCCGGGCAACCTGATTGCCGTTCCGAACTG------GGTGG
T------GGTGGTGGTGGGGCGAGTCCGAGGAAGAGGATGACCGACCGGGAGGGAGGCGAGTGGTTGGGTTGGGCGCTGT
GGCATTGGCAATGGCGATGTGACGACAGAATCTTGGCATATTGTGTGGAGAAGATGCTGCCGGGCCATCCAGGAG-
>chr5A_411
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-----------GTACAAGACAAGATGCAAAAACGTAAACAACACAGAACTAAAAGAAGAAGAAGAAAAGATGACAACCAA
ACACAAAGCAAAGCAAAAAAAAAACATAACCGCAGGCGCCCTTTTTCTAAGCGACGAGGAACCAAACCGC---ACATATC
TTGCGAT--TTTGCTTTGAAGTGTGC-----CCCAACCAAAGCCGCGAGGATGGATGGATGGATG----CGTCTCGCGGC
GGCACAGCCCCTGCCGTCCGTCCAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTCCATCTCCAACCTCCCCCCACCCCTCCCCTCCCCAAATT
TGGATCAAACGAACTCGCTAAACTTAATCTCATCCTTAAACGCGCGGCGAACGGAATCGGATTT-GGGAGGGAC--GAGG
CGTTTGGATCCCATTTTGGG---GGGCTAATCGCGGTGGGCAGTGGGT-------------GTTAGGGTTTCGGATCTGG
TCGGTTTTTGGTTTGCTTTGGTCCTAATCCGGCGATGAACGGCGAGATGATGATGCGGCCTCCCGTGCCGGCGCCGTACC
AGGTGTGGGCGGCGGCGCTGGCGCAGCAGC---------AGCAGCTCCCGCCGGTGGCGGAGGCGCCGCCGG---CG---
GGGTTCAAGCCGGCGAGGCCCGCGTGGAAGCGGGCGGCGCGGCAGCAGCCCGGGTGGAAGCAGCGCAAGGCCGCGGCCCA
GGCGCAGGGGAGGTGGGGCGGGTCGGCGGCGCCGCGCAACACGACGTCGTACCTGATCCGGGCCAAGCGGGCGGGTGGCG
TGGCGTCGCTGGTGTCGCCGTGCCCCGTGACGCCCGCCGTGCTGCCGACGCCGCGGCTGTCGCCGGCGCGGGAGGTGCTG
GTGGAGATGGCCAAGGAGGCGTGGGGCGTCGACGGGTACGGCTCCATGAAGGGCCTCATCCGCCTCCGCCCCCAGGCCGC
CGGCCCCGACACCGGCGACGGCGACGGCGCCGACTCGGGCTCCGGCGAGAGCGACGTGGAGGAGCACGTGGAGGTGGAGC
GCCGCCTCGACCACGACCTCAGCCGCTTCGAGATGGTGCAGCTCCCCGCCGGGCCCGCCGGCGAGGACGA---------C
GAGGACGATGACGCCCGCGCGGCCCGGCTGGAGGAGGAGAACCTGACCCTCCGCGCGCGGCTCTTCCTGGTGGAGCGCGA
CATGGCCGACCTCCGCCGCCGCCTCGTCGCCGTGGAGTCCCTCTGCCGCGACCGCCACCGCGACGGCTGCGTCGTGGACG
CCGCCCTGCCTTCCCCCGCCGAAACCGACGAGGCG---GCCACCGAGGACGCCATGGTACTCTGACGTG-----------
-----GCCGGCCGCCCGCACCGTGCCCTGTACATAGTTCACCGTCCCTT---CCTCCTCCC---CCCTGTGCAGGTGTCA
ACAGACAGACAGATGTGAATGAAGAGTAGCCAGCAGCATCAGCATCAGCA------------GTTCAAATAGCATCCTAG
AGCCAGTTATTACTCTTCCTTC-------CCTCGAATCCCCATAGCAGTCCGATCTGTGGTTGTGTCATCAGGTAGCCAG
ATCCCCATTCCATGCCCATCATGTAGTCGTAGCAGCATTAGGAAGGAGTCAACCA---------AACCAATGTTTTCATG
TAGATGTACTAGCGGTTAACCGGCG---TCAATGGCGGGCACCGGCGAGGAAGACGAAGACGACGCGGGGCCAGCGTTCC
TCTAGATCCATCCAGTGCCTGCCAAACTCGGCAA----CTCCAGTTATTAGTCAGTAGTAG---CAGCATTTGTTGTGAT
TCTGAACATGTTGT---TCCATTATTGCATTCCGCATTCTGTACCATTCTGTGCGCATCCATGCTCACCAAATGCTTGGC
CATTGGCAGGG----GGCAGGCAGCGGCGGCGAGACCCATGGACGATGGATCCAGCAGCCGTGGGAGTTTTATACTAGTG
CTG---------TTTTAATTTTATTTTGTTTAGTTTTTGCTGTGCTGGCGTG------------CGA------------T
TTTGGCGAGACGTGGCGTGACCAGTGGGACTCGCTCCTGTGGATGCGGGGGGTGGGGGTGGT---------GACGGCGTG
TTGAATTGCGGCTCGGCTCGGTTGGTCAGGCATG-CAGGTCCGGTTAA--------CCATTCCGAACTGGGCGGCGGTGG
T------GGTGGTGGTGGGGCGGGTCCGAGGAAGAGGATGACCGACCGGGAGGGAGGCGAGTGGTTGGG-----------
--CATTGGCAATGGCGACGTGGCGACAGAATCTTGGCATCTTGTGTGGAGAAGGTGCTGCCGGGC-----------
>SNPs
--------------------S-------------------------------S-----------S---------SS----
--------S-----------S------------------------------------------S--------S-------
---------------S------------S--------S---S--------------S-----------------S---S-
---------------------SSSSSSSSSSSSSSSSSS---------------------------------S-------
-------------SS---------S----------------S-----------------------------S---S----
----------S--------------------S------------------------------------------------
S-----------------------SS--------------------S---------------------------------
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------S-------S-----------------------SS--------------------S---S------S--------
----------S---SS-SS--S--------------S------S-S-S--SSS---------------------------
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----------------------------------------------------------------S---------SS----
-------------------------------------------S-S----------S-----------------------
---------------------------------------------------------------------S----------
------------------------------SSSSSSSSS-------------------S-S----SS-S--SSSS-----
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------------------------------------------------------------------------S--S----
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--------------------------------------------S-----------------------------------
------------------------------S-------------------------------------------------
----------------------------------------------------------------------SSSSSSSSS-
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---------------------------------------------------------------------------S----
----------SS-----S-----------------SSS------------------------------------------
-SSSS--------------------------------------------SSS-------------S--------------
------------------------------------------------------SSSSSS-----------------S--
-------S--S---------S---SSSS---------------------S------------------------------
S-----------------------SS-------------------------------SS---------------------
--------S-----------------------------------------------------------------------
--------------------S-----S------S-----------S-----------S---SSS----------------
---------S------S---------------------------------------S-----------------------
-----------SSSS----------------------------S------------------------------------
SSS----SSSS------S----------------------------S-------------------SSSSSSSSSSSSS-
-------------------------------------------S-------SS---S-S---SSSSSSSSS---------
------------S-----S---------------S---------------------------S-----------------
-SSSSSS--------------------------------------------------------------S----------
---S-----------------------------------------------------------------------S
>forward_335
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---------------------------------------------------------------------------TCAAA
GGACGGTTGGACCAG-----------------------------------------------------------------
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>reverse_2409
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--------TTAGCGGTTAATCGGCGTCA----------------------------------------------------
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