>input_sequence_67893
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----ATGTCGGTGCTTATGTTAGACGTCGTTACCAGTATTAACCCTC----CATTAGCGCATCTGGGCACCGGTTTTGTT
GCTTATTTCCGTCGAAGAACAGTCCTAATAATAACAAATGAGCATG----TTGTCCAAGGAGCTATGTTTG----TTAGG
GTTAGGCTCCCGGGCGG-AAGCCAACAGTTCACTGGAGAAGTGCTGGTGGCAGACGACCAAGTGGACCTTGCTATAGTTC
GATTGGTTAATGTGGAGGGACCGTTTCAACGTATGGTGTTCGCGGATGTACCTATTGATAACTTTCCATGGACGGCATAT
GCTCATGGATATTTCTTGGTCCTTGGAGCGCCGGTCATCAACCCTGCGAGGGCTCCCGGTGAGATTAAGTACGTAAAAAG
ACACTTAAATTTCAATTGACTTGCATTGGACGACTTACAGCACTA-----------------------------TATCAT
TTAATTTACTGAAGCTGGGCTTTTTATGTTTCTCTCAGCGGCGCGTTCTTTCGAAACAATGTTCACTACCTACAAGGGAA
TTTCGCACTTCAGCATGGAATGTCCGGTGGACCAGTTACGATGGGAAACAGAGTCATTGGAGTCAGTGCCGCAGCTGCGT
GGGGATCGAGCGTCATTGTTTCCCTGCGTACTGTACACATGACACTTATGTTTTGGTGTGGTCTTAATGTAAGAATTCCA
GATCGATCGATTTCATTTTTCCTTTGAAGCAGC-ATTTCAATTTTTTTACACCGTTTATACTTTATAGGCTGTTTCTAAT
CCC-TGTTTTTAGGACGGAGACCCTACTATTGATGAGATGCTAGAAATGCTTGCTGCTGGTGCCGCCTAA----------
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-------------------------------------------
>chr5B_1_TraesCS5B01G352000
TTTTCCCCTGGCTGGCCAAGCCATACTCCCAAGTCCTCACCACATCGCCTAGCACCCAGCCTATATATCCCGCCCCGCAG
CGCAGCACCCATCAGAGCAGCGCCCAGACGCACCCAGCCCTCACCTCTTTCTTCTCACCACCGGGCCGCCATGCGCCCTA
GCCTCTTTTTTCTCACCATAGCGGCTCCCTAGGTGTGGAGTG--GACGAGCTCCTGGCCTTCGTCTCCGTCGTCAAGTCC
CACCGACAAGACAAGGCACTCGCTCCGCCC-CTTCTTGCACGTACGTCCAGCCGCCCGCGCTACGTCCGATAGTACTGGA
AGTGGAAGGTATCCGTCCGCCCGCTCCTTCCTATGAAAATAATACT----GTACGTTTTTGAAATATAGGCATA----GG
AGAAGTAGCACGTAGTAATTTTCTGGTCGCTAGCATAT------ATAGCATGGATGTTTGGAAGATTTTGCCGCCTCTGG
ATTTACTGT----ATTGCTTCTCTTACGCCTTGTTCGGATTACCTCCGCTCCACAGCTCCACTCCGGGAGCGGGTGGAGT
TATAGTGGGAAAACGCGGAGCGCCGTTTTCCTGGCTCCACAGCTCCTCGTATTTTGCGGAGCGGGTGGGATACCGAACAG
GGCCTTAATTAGCACGC-GGGCTTCCTCCGTGTACGGTATTCTCATTAC-----------TATCGTCGTGCC---CCTCG
CATAAACCCTCTCCGCGCT----GCATCCCACAGCGCCCACACGAAATCTGATTTGTGGACCAAGAACCTTGCATGTGCT
TAATTTTCACAACCAATGGCCGTGGTAGTTTCATTCATCCATACGCGAGATGAAGCTCATGTTCACCCTTTGGTGGGATC
TTGCAGCTCTTTCATGTTTCTTTACTCTTGGCATGCATGTTTAGTCCTCCCATCTGCACGTTAATTAACCTTTTTGTCTT
TTCTCAACCTCTTGCAGCAGTTTCCGTTTCATATCTTGAGTTTATCTATCTAT----ATACATCAACCCAAGAAGAAGAA
GAAAATGTCGGTGCTTATGTTAGACGTCGTTACCAGTATTAACCCTC----CATTAGCGCATCTGGGCACCGGTTTTGTT
GCTTATTTCCGTCGAAGAACAGTCCTAATAATAACAAATGAGCATG----TTGTCCAAGGAGCTATGTTTG----TTAGG
GTTAGGCTCCCGGGCGG-AAGCCAACAGTTCACTGGAGAAGTGCTGGTGGCAGACGACCAAGTGGACCTTGCTATAGTTC
GATTGGTTAATGTGGAGGGACCGTTTCAACGTATGGTGTTCGCGGATGTACCTATTGATAACTTTCCATGGACGGCATAT
GCTCATGGATATTTCTTGGTCCTTGGAGCGCCGGTCATCAACCCTGCGAGGGCTCCCGGTGAGATTAAGTACGTAAAAAG
ACACTTAAATTTCAATTGACTTGCATTGGACGACTTACAGCACTA-----------------------------TATCAT
TTAATTTACTGAAGCTGGGCTTTTTATGTTTCTCTCAGCGGCGCGTTCTTTCGAAACAATGTTCACTACCTACAAGGGAA
TTTCGCACTTCAGCATGGAATGTCCGGTGGACCAGTTACGATGGGAAACAGAGTCATTGGAGTCAGTGCCGCAGCTGCGT
GGGGATCGAGCGTCATTGTTTCCCTGCGTACTGTACACATGACACTTATGTTTTGGTGTGGTCTTAATGTAAGAATTCCA
GATCGATCGATTTCATTTTTCCTTTGAAGCAGC-ATTTCAATTTTTTTACACCGTTTATACTTTATAGGCTGTTTCTAAT
CCC-TGTTTTTAGGACGGAGACCCTACTATTGATGAGATGCTAGAAATGCTTGCTGCTGGTGCCGCCTAATCAGTTCCAC
AATTTCAAGTAAAATCAAGGTACTTCCTCGGTGTAAATGTATTTTTTCATCAGTCAACCATGCGTCCATGAACTAGCTGA
AAGGAAGTAAAGCATCTAACTTGCTATGAAATAACAGTCCGAATATTTATCGTTAATTAGTCATGATATTTCCTAATGCA
ATGTAGTAC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GATATAGACTTATGTTGCTTACTTGGACAGATGGGGAAAATATCTGTTCGCTTATCTTGTCTTGTTTTA
AACCTTCAAGCTTAGTAAGAAGTGGCATGTCAGCACACATTTGAAAGGGAT----TACACGGAAAGATGAAACTATAAGA
ACAGAAGTG-----TTATGCTTATATTGAAAGAAAGTGAAATGACAAAGTGGCTACATCTGCTCTGTTTGTCATACAAAA
CATAATCAATTTCAAGTTTTCCTCATACAGTGGAAAACTATTTCAATTACATAAGAAAGATGACAATAGCAAGAGAACGT
ATAGATGATATTTATTGGATTTCATTCGTGAGACAA-AAAAATTGTTGGACAACTCAGGTTTGATAAAATGGCACTAATT
TTGGCTCGATTTGCACAAGAGAACACAATCCTAGGCTCCGAGCATATAGATAAAGGTAGACATTTCCATTCTCATTCAGA
CTAAAGATACATGTGGATATATCTATCTTTAGTCTGTTTGATAAACAAACGTACCTTCCTTTTTCAATCCGATGATATGG
TTATGCGCCCATATGATCATTCCGATGTGCAAATATTTACCCGAACCCGCAAAACAAAATCATAATAGAAAAAGAGTTAT
ACTATAAGAGTAGTCCAAGTTATTAAGAGATTAGCAAACAAAAAGAATCTCTGCAATTAGATTATTTCCTAAACAAAGTG
ATTTATAGCATTCCATCTGAAGATAGGAACATGCACCGTACC-AAATATATGTGATGTTAGTAAGCACTATCAGACTGAA
GGTATGGATGAATAAAGAAGAAGCAAAACCTCTTGACTGAGTA
>chr5D_1
TTTTCCCCTGGCTGGCCAAGCCATACTCCCAAGTCCTCACCACATCGCCTAGCATCCAGCCTATATATCCCGCCCCGCAG
CGCAGCACCCATCACAGCAGCGCCCAGACGCACCCAGCCCTCACCTCTTTCTTCTCACCACCGGGCCGCCATGCGCCCTA
GCCTC-TTTTTCTCACCATAGCGGCTCCCTAGGTGTGGAGTGTGAACGAGCTCCTGGCCTTCGCCTCTGTCGTCAAGTCC
CACCGACAAGACAAGGCACTCGCTCCGCCCTCTTCTTGCACGTACGTC-AGCCGCCCGCGCTCCGTCGGATAGTACTGGA
AGTGGAAGGTATCCGTCCGCCCGCTCCTTCCTAAGAAAATAATACT----GTACGTTTTTGAAAGATAGGCATATATAGG
AGAAGTAGTACGTAGTAATTTTCTGGTCGCTAGCATATACGTATATAGCATGGATGTTTGGACGATTTTGCCGCCTCTGG
ATTTACTGTATTAATTGCTTCT----------------------------------------------------------
--------------------------------------------------------------------------------
---CTTAATTAGCACGCGGGGCCTCCTCCGGGTACGGTATTCTCATTACTATACTATATATATCGTGGTGCC---CCTCG
CATAAACCCTCTCCGCGCTAGCTGCATCCCACAGCGCCCACACGAAATCTGATTTGTGGACCAGGAACCTTGCATGTGCT
TAATTTGCACAACCAATGGCCGTTGTAGTTTCATTCATCCATACGCGAGATGAAGCTCATGTTCACCCTTTGGTGGGATC
TTGCAGCTCTTTCATGTTTTTTTACTCTTGGCATGCATCTTTAGTCCTCCCATCTGCACGTTAATTAACCTTTTT---TT
TTCTCAACCTCTTGCAGCAG-TTCCGTTTCATATCTTGAGTTTATCTATCTATCTATATACATCAACCCAAGAAG-----
----ATGTCGGTGCTTATGTTAGACGTCGTTACCAGTATTAACCCTCCATGCATTAGCGCATCTGGGCACCGGTTTTGTT
GCTTATTTCCGTCGAAGAACAGTCCTAATAATAACAAATGAGCATGCATGTTGTCCAAGGGGCTATATATGCTTGTTAGG
GTTAGGCTCCCGGGCGG-AAACCAACAGTTCACTGGAG-------------AGACAACCAAGTGGACCTTGCTATAGTTC
GATTGGTTAATGTGGAGGGACCGTTTCAACCTATGGCGTTCGCGGATGTATCTATTGATAACTTTCCATGGACGGCATAT
GCTCATGGATATTTCTTGGTCCTTGGAGCGCCGGTCATCAACCCTGCGAGGGCTCCCGGTGAGATTAAGTACGTAAAAAG
ACACTTAAATTTCAATTGACTTGCATTGGACGACTTACACTAGTATAGTAGTAGTACTAGCTAGCACTATACAGTACCAT
TTAGTTTACTGAAGCTGGGCCTTTTATGTTTCTCTCAGCGGCGCCTTCTTTCGAAATAATGTTCACTACCTACAAGGGGA
TTTCGCACTTCAGCATGGAATGTCCGGTGGACCAGTTACTATGGGAAACAGAGTCATTGGAGTCAGTACCGCAGTTGCGT
GGGGACCGAGCGTCATTATTTCCCTGCATACTCTACACATGACACTTATGTTTTGGTGTGGTCTTAATGTAAGAATTCCA
GATCGATCGACTTCATTTTTCCTTTGAAGCAGGGATTTCAATTTTTTTTTACACCG-----TTTATAGGCTGTTTCTAAT
CCCATGTTTTTAGGACGGAGACCCTACTATTGATGAGATGCTAGAAATGCTTGCTGCTGGTGCCGCCTAATCAGTTCCAC
AATTTCAAGTAAAATCAAGGTACTTCCTCGGTTTAAATGTATTTTTTCATCAGTCAACCATGCGTCCATGCACTAGCTGA
AAGGAAGTAAAGCATCTAACTTGCTATGAAATAACAGTCCGAATATTTATCGTTAATTAGTCACGATATTTCCTAATGCA
ATGTAGTA------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TGATATAGACTTATGTTGCTTACTTGGACAGATGGGGAAAATATCTGTTCGCTTATCTTGTCTTGTTTTA
AACCTTCAAGCTTAGTAAGAAGTGGCATGTCAGCACACATTTGAAAGGGATCGATTACACGGAAAGATGAAACTATAAGA
ACAGAAGTG-----TTATGCTTATATTGAAAGAAAGTGAAATGCCAAAGTGGCTACATCTGCTCTGTTTGTCATACAAAA
CATAATCAATTTCAAGTTTTGCTCATACAGTGGAAAACTATTTCAATTACATAAGAAAGATGACAATAGCAAGAGAACGT
ATAGATGATATTTATTGGATTTCATTCGTGAGACAACAAAAATTGTTGGACAACTCAGGTTTGGTAAAATGGCACTAATT
TTGGCTCGATTTGCACAAGAGAACACAATCCTAGGCTCGGAGCATATAGATAAAGGTAGATATTTCCATTCTCATTCAGA
CTAAAGATATATGTGGATATATCTATCTTTAGTCTGTTTGATAAACAAACGTACCTTCCTTTTTCAATCCGATGATATTG
TTATGCGCCCATATGATCATTCCGATGTGCAAATATTTACCCGAACCCGCAAAACAAAATCATAATAGAAAAAGAGTTAT
ACTATAAGAGTAGTCCAAGTTATTAAGAGATTAGCAAACAAAAAGAATCTCTGCAATTAGATTATTTCCTAAACAAAGTG
ATTTATAGCATTCCATCTGAAGATAGGAACATGCACCGTACCAAAATATATGTGATGTTAGTAAGCACTATCAGACTGAA
GGTATGGATGAATAAAGAAGAAGCAAAACCTCTTGACTGAGTA
>chr5A_1
TTTCCCCCTGGCTGGCCAAGCCATACTCCCAAGTCCTCACCACATCGCCTAGCACCCAGCCTATATATCCCGCCCCGCAG
CGCAGCACCCATCACAGCAGCGCCCAGACGCACCCAGCCCTCACCTCTTTCTTCTCACCACCGGGCCGCCATACGCCCTA
TCCTC-TTTTTCTCGCCATAGCGGCTCCCTGGGTGTGGAGTGTGGACGAGCTCCTGGCCTTCGTCTCCGTCGTCAAGTCC
CACCGACAAGACAAGGCACTCGCTCCGCCT-CTTCTTGCACGTACGTCCAGCAGCCCGCGCTCCGTCCGATAGTACTGGA
AGTGGAAGGTATCCGTCCGCCCGCTCTTTCCTAAGAAAATAATACTGTACGTACGTTTTTGAAAGATAGGCATA----GG
AGAAGTAGTACGTAGTAATTTTCTGGTCGCTAGCATAT------ATAGCATGGATGTCTGGACGATTTTGCCGCCTCTGG
ATTTACTGT----ATTGCTTCT----------------------------------------------------------
--------------------------------------------------------------------------------
---CTTAATTAGCACGC-GGGCCTCCTCCGGGTACGGTATTCTCATTACTAT-----------CGTCGTGCCCCGCCTCG
CATAAACCCTCTCCGC----GCTGCATCCCACAGCGCCCACACGAAATCTGATTTGTGCACCAGGAACCTTGCATGTGCT
TAATTTGCACAACCGATCGCCGTTGTAGTTTCATTCATCCATACGCGAGATGAAGCTCATGTTCACCCTTTGGTAGGATC
TTGCAGCTCTTTCATGTTTCTTTACTCTTGGCATGCATGTTTAGTCCTCCCATCTGCACGTTAATTAACCTTTTT---TT
T-CTCAACCTCCTGCAGCAG-TTCCGTTTCATATCTTGAGTTTATCTATCTAT----ATACATCAACCCAAGAAGAAGAA
G---ATGTCGGTGCTTATGTTAGACGTCGTTACCAGTATTAACCCTC----CATTAGCGCATCTGGGCACCGGTTTTGTT
GCTTATTTCCGTCGAAGAACAGTCCTAATAATAACAAATGAGCATG----TTGTCCAAGGGGCTATGTTTG----TTAGG
GTTAGGCTCCCGGGCGGAAAGCCAACAGTTCACTGGAGAAGTGCTGGTGGCAGACAACCAAGTGGACCTTGCTATAGTTC
GATTTGTTA-----------------------------------------------------------------------
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>chr5A_1223
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-------------------------------------------------------------------------------C
GATTGGTTAATGTGGAGGAACCGTTTCAACCTATTGTGTTCGCGGATGTATCTATTGATAACTTTCCATGGACGGCATAT
GCTCATGGATATTTCTTGGTCCTTGGAGCGCCGGTCATCAACCCTGCGAGGGCTCCCGGTGAGATTAAGTACGTAAAAAG
ACACTTAAATTTCAATTGAATTGCATTGGACGACTTACA---GTATAGTAGTAGTACTAGCTAGCACTATACAGTATCAT
TTAATTTACTGAAGCTGGGCCTTTTATGTTTCTCTCAGCGGCGCGTTCTTTCGAAATAATGTTCACTACCTACAAGGGGA
TTTCGCATTTCGGCATGGAATGTCCGGTGGACCAGTTACTATGGGAAACAGAGTCATTGGAGTCAGTACCGCAGTTGCGT
GGGGACCGAGCGTCATTATTTCCCTGCATACTGTACACATGACACTTATGTTTTGGTGTGGTCTTAATGTAAGAATTCCA
GATCGATCGACTTCATTTTTCCTTTGAAGCAGGGATTTCAAAAAAAAATTACACTG-----TGTATAGGCTGTTTCTAAT
CCCATGTTTTTAGGACGGAGACCCTACTATTGATGAGATGCTAGAAATGCTTGCTGCTGGTGCCGCCTAATCAGTTCCAC
AATTTCAAGTAAAATCAAGGTACTTCCTCGGTTTAAATGTATTTTTCCATCACTCAACCATGCGTCCATGCACTAACTGA
AAGGAAGTAAAGCATCTAACTTGCTATGAAATAACAGTCCGAATATTTATCGTTAATTAGTCACGATATTTCCTAATGCA
ATGTACCCCCTTCGTTCCTAAATATTTGTCCTTCTAGACATTTCAAATGACTACTACATTCGGATGTGTGTAGACATATT
TTAGAGTGTAGATTCACTCATTTTGCTCCGTATGTAGTCACTTGTTGAAATGACTAGAAAGACAAGTATTTAGGAACGGA
GGGAGTAGTGTGATATAGACTTATGTTGCTTACTTGGACAGATGGGGAAAATATCTGTTCGCTTATCTTGCCTTGTTTTA
AACCTTCAAGCTTAGTAAGAAGTGGCATGTCAGCACACATTTGAAAGGGG----TTACACGGAAAGATGAAACCATAAGA
ACATATTTATATGTTTATGCTTATATTGAAAGAAAGTGAAATGCCAAAGTGGCTACATCTGCTCTGTTTGTCATACAAAA
CATAATAAATTTCAAGTTTTGCTCATACAGTGGAAAACTATTTCAATTACATAAGAAAGATGACAATAGCAAGAGAACGT
ATAGATGATATTTATTGGATTTCATTCGTGAGACAAAAAAA-TTGTTGGACAACTCAGGTTTGGTAAAATGGCACTAATT
TTGGCTCGATTTGCACAAGAGAACACAATCCTAGGCTCGGAGCATATAGATAAAGGTAGATATTTCCATTCTCATTCAGA
CTAAAGATATATGTGGATATATCTATCTTTAGTCTGTTTGATAAACAAACATACCTTCCTTTTTCAATCCGATGATATTG
TTATGCGCCCATCTGATCATTCCGATGTGCAAATATTTACCCGAACCCGCAAAACAAAATCATAATAGAAAAAGAGTTAT
ACTATAAGAGTAGTCCAAGTTATTGAGAGATTAGCAAACAAAAAGAATCTCTGCAATTAGATTATTTCCTAAACAAAGTG
ATTTATAGCATTCCATCTGAAGATAGGAACATGCACCGTACC-AAATATATGTGATGTTAGTAAGCACTATCAGACTGAA
GGTATGGATGAATAAGGAAGAAGCAAAACCTCTTGACGAGTA-
>SNPs
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--------------S-----------------------------------------------------------------
-----S--------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
---------------------------------S------------------------------S---------------
--------S-----------------------------------------------------S-----------------
----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS-------------------S-------S-------------------------------------------------
---------------------------------------------------------------S----------------
------S----------------S--------------------------------------------------------
---------------------------------------------------------------------------SSS--
--------------------S-----------------------------------------------------------
-SSS----------------------------------------------------------------------------
------------------------------------------------------------S-------------------
-------------------------------------------------------S------------------------
------------------------------S-------------------S-----------------------------
--------------------------------------------------------------------------------
---------------------------------------SS-S-------------------------------------
--------------------S-----------------------------------S---------------------S-
---------------------------------------S---------------------------S------S-----
-----S-----------S---------S----------------------------------------------------
----------S---------------------S---------------SS--SS-SSSSSS-------------------
--------------------------------------------------------------------------------
--------------------------------S-------------------------------------S---------
---------------------------------------------------------------S----------------
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-------------------------------------------S------------------------------------
--------------------S-----------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------S---------------------S-------------------
---------S--------------------------------------------------------------------S-
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>forward_536
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------------------------------------GGATTACCTCCGCTCCACAG------------------------
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>reverse_1686
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-----TCGAGCGTCATTGTTTCCCT-------------------------------------------------------
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>forward_569
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---------------------------------------------------------------------GCGGGTGGAGT
TATAGTGGG-----------------------------------------------------------------------
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>reverse_1698
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-----------------GTTTCCCTGCGTACTGTACAC------------------------------------------
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>forward_605
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-------------------------TTTTCCTGGCTCCACAGCTC-----------------------------------
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>reverse_2444
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-------------------------------------------ACAAAGTGGCTACATCTGCTCT---------------
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-------------------------------------------
