>input_sequence_67890
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-------------------------ATGAAGCTTGCCCGGACCACGCCGATTTCATTTC-------CTCAGAGCCCACAG
CTGGCGTCAGGGATGCAGAGCACTCCCGCAAGCGGCGGCGCCTTGAGGATGCAGCGCTGGATGGAGACGAGATTGACTCA
TACAATGATGCTAGTGAGGTTCGTTGCCAATTCAAACGATATGCCTCCTGAAGATATCAGCGATGCAACCGTCAGAAAGG
AGGAAGATGCAGAGGGCATGTTCGTATCCAACTCAAATGGCTCCAGTTGGACTCGAAGGTAATCAAGTTGTCAACTTTTC
ATAAAAATGTATTTTTCTAGCTCGTAGATGATAGATTGTTTTGGAAATTTTTAGTTAGCCGCCCATAATGGTGTTTGATT
GTGGTTTGAATATCTATTTTTTCTAGACTGTGCAGCCAGAAATGGTCCGTTTTCTGATGGAATTAACTGAATGCATGTGT
AACATGTTGATAAACTGCAGAACTAGGATCGGTAAGGCAGCATATGAGAGGGAAATTAATCCAAGCAGGTTCCTGCTCTC
GAGGTTTCAATACATGCTTATACTGAGAAAAAAAACTGGTACTGTTGTTAATCAGATACTGGGGACGAGTTTTGATTCGT
TTGAGGAAGCTTACAGTTTACCTGCTGAAAAGAATGTTATATGTGATGCACATTATTTTTCTTCGCAGGTGATGATCCAA
CTTGGATTCCAGGAGGTTCCTCGGAAACATGTCTTGAAACGTTGGACGAGGGAAGCAAGGTATATTTTGCCAGCAGAATT
TTTGCGCTGCTAGAAGGATCAAGGTCCTCTGAAGTACTCTTCACGGAGACATAA--------------------------
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----------------------------------------------------------------------
>chr5B_1_TraesCS5B01G121800
TTTTTTCTATGGGAAAATTTTGTTTTTGCCGCTCTAGATTTTGCCAATTTTTCTTATGCCATTCTGTATTTTGACATTTC
ACTTTTGCCACTCTTAGCTTTTAACGGTTATCACAATTGTCATTCCGTGACAAAAGAAAAATAATTTTATTTTATTTTTG
CCACTCTTAGCTTTTGATAATTATCACAATTGCCACTCCAAATATTTTGATTTTGCCACCGGAATGGCAATTGTGATAAT
TGTCAAAAATGAAGAGTGGCAAAAGTGAAATGTCAAAATCTAAAGTGTCATGAGAAAAATTGGCAAAATCTAGAGCGGCA
AAAACAAAATTTTTCCTTTTCTATCTACTAACCTACTCCTTTCATCTTATATTGTAAGGAGAAAGGCGTTTTGGTGGCCG
AGCTACCTGAAGGCCGGTATCTGGGTCGTGGTTTATCGCGCTATAATGTGTGCTGCTTTATTTTCGTTTTTTTGTACAGT
CGCCATTAAGTTGAAATACATCGGTGCCATCATAT--CCAGTGATGCATTTGTACACGGGCCA---GTTCAGTATCTTCT
GCACATACGTCGTGTACGTCCTGGGCCATTTTAAATGTCGCATGAGTAGGTGGGTTGTTGGGTGATTAATAATGTTTCT-
ATGGG-CCATGTGAACCTGCAGATAGCTTCCCATTTACTTCGAGAGTGAACACCTTTTCTGCCTCGCTAGGCCATTCATC
CTCTTATGGC--------GGCAGCTGGGTTTGCGACAGATCGCCATGGATGGGTTGGAGTTCTTCTTCGAGGAAGCCGA-
ATCAGGACAAGCTCCATCTGATCTTTCAATTTAGACTAGTTTGTTCTAGAGTATATG-----------------------
--TCCTACGGTAGCTATCGTTTTTTGGTTCCACTGCCCCATCGTGTCAAATCTGAAAAGGATGATTTCCTGTGGTTCGTT
GCAGATTG-----------GTTCCCAGGGTGGATGTCGGTTATCTTTTAGGGGGA------GATATCGC-------TGCT
GTGGAATCGGTCGTTGCTTCAATCCATGAAGCTTGCCCGGACCACGCCGATTTCATTTC-------CTCAGAGCCCACAG
CTGGCGTCAGGGATGCAGAGCACTCCCGCAAGCGGCGGCGCCTTGAGGATGCAGCGCTGGATGGAGACGAGATTGACTCA
TACAATGATGCTAGTGAGGTTCGTTGCCAATTCAAACGATATGCCTCCTGAAGATATCAGCGATGCAACCGTCAGAAAGG
AGGAAGATGCAGAGGGCATGTTCGTATCCAACTCAAATGGCTCCAGTTGGACTCGAAGGTAATCAAGTTGTCAACTTTTC
ATAAAAATGTATTTTTCTAGCTCGTAGATGATAGATTGTTTTGGAAATTTTTAGTTAGCCGCCCATAATGGTGTTTGATT
GTGGTTTGAATATCTATTTTTTCTAGACTGTGCAGCCAGAAATGGTCCGTTTTCTGATGGAATTAACTGAATGCATGTGT
AACATGTTGATAAACTGCAGAACTAGGATCGGTAAGGCAGCATATGAGAGGGAAATTAATCCAAGCAGGTTCCTGCTCTC
GAGGTTTCAATACATGCTTATACTGAGAAAAAAAACTGGTACTGTTGTTAATCAGATACTGGGGACGAGTTTTGATTCGT
TTGAGGAAGCTTACAGTTTACCTGCTGAAAAGAATGTTATATGTGATGCACATTATTTTTCTTCGCAGGTGATGATCCAA
CTTGGATTCCAGGAGGTTCCTCGGAAACATGTCTTGAAACGTTGGACGAGGGAAGCAAGGTATATTTTGCCAGCAGAATT
TTTGCGCTGCTAGAAGGATCAAGGTCCTCTGAAGTACTCTTCACGGAGACATAACAACCTGCATTTGTTGTGCCTAGAAA
TTGTCAAGCTAGGCCACAACAATGTCGATGCATATAGTCTTGCTATGGAGCAGCTGAGAGATGTGAAAACATTACTGGAG
CCTGTTGCTGCTATACGCGATGGTATGAG-----------GAGAAATGGCAGCTGATTCTGCAGCTTCAGAGACAGGGAA
TAAACAACATTTTGGTCCAGCAAAGCAAGCGCATAGTGCATTAGAAGGTTCTGATAGTTTTGCAGCACCTTCAAAGAAGA
GACCAACTG------CCTAGCACAAGCCGCGATAAGGCACCACACGAGCAGCCATCTGAAAGGACTAGATTTTGTTCCAT
ATGCAGGGGTCAAGCCATCAAAGTCACAAGAGCATCACCTGTCCGCAACGACGTGATCTTCCAAAGGCACCGAGAAGGTT
GCCTCGATGCTCCAGATGCAACCTACAAGGTGACAGGAAGAACACTTGCACCTACCAACCCAAGCAAGATTTTCAAGATT
GATTTTCAGTACTGCTTATGCTTGAAATTCAGTTTGCTAGCTGAATAATCAAC---------------------------
TGTTTGTCAAATGCAAGATTTTCAGAACTGCTTGTGCTTGCATAGTTGTGAGCTTGTTCCTATGTATGTGT-CGCTATTG
TGCATCACTTGTTTTTAAAAAA-TCATGTAATGCATTGACGTTGTCATGGTGTTGTGTTCAAGAGTGCGATTTAACCGCT
GG----------ATTCTGCTGTTGTTGTTTCTTGGTTATATTTTCATGGGCGTAGTCCGATGTTTGACGTGTGCAAGTTC
AGCAACAAAAACCCTTTCATTTGTACCTACGGAATCGATTGATGTTGATCTCCACACAAACCTCATCGCAATCTGGGCAC
ATGATGAGCGGCAGGTGCTGCACTGCTGCTGCCTTGCCCAGGATCGCACCGAGGAAGAGGAAGAAGACATAGCTAGAGTT
GTGTTGAGTTGGGGATGGCTGGCCTGCAATGTGCAATGCATCTCAGATATAAATAGGCAGTGGCATAAAA
>chr2D_372
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---------------------------------------------------TTGTAGAGAGAGGGGCATTTTGGTGGCCG
AGCTACCTGGAGGCCGGTATCTGGGCCGTGGTTTATCGCGCCATGATGTGTGCTGCTTTATTTTCGTTTTCTTATACAGT
CGCCATTAAGTTGAAATACATCGGTGCCATGATCT--CGGGTGCTGC-TTTGTACACGGGCCTGATGTTCAGTGTTTTCT
GCACAGACGTCATGTACCTCCTGGGCTGCTTTAAATGTCGCACGAGTAGGTGGGTTGTTGGGTGATTAATAATGTTTCT-
ATGGGCCCATGTGAACCTGCAGATAGCTTCC-ATTTACTTCGAGAGTGAACAGCTTTTCTGCCTCGCTAGGCCCGACGGC
CATTCATCGT-TTCTCGTGGCAGCTGGGTTTGCGACGGATCGCTATGGATGGGCTGGAGTTCTTCTTCGAGGAAGCCAA-
ATCAGGGTAAACTCCATCCGATCTTTCAATTTAGACTAGTTTGTTCTTGAGCTGGGAACAAGTTGTGCCTGTAGAGCATG
TTGCCTACGGTAGCTATCGTTTTT-GGTTCCACTTCCCCATCGTGCTAGATCTGAAAAGGATGATTTCCAGTGGTTCGTT
GCAGATTG-----------ATTCCCAGGGTGGAGGTCGGTGATCTTTTAGGGGGCGGGGGGGATATCGC-------TGCT
GTGGAATTGGTCGTTGCTCG------------------------------------------------------------
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--------------------------------------------------------AACCCAAGCAAGATTTTCAAGATT
GATTTTCAGTACTGCTTGTGCTTGAAATTCAGTTTACTAGCTGAATAATCAGC---------------------------
TGTTTGTCAAATGGAAGATTTTCAGAACTGCTTGTGCTTGCGTAGTTGTGAGCTTGTTTCTATGTTTGTGT-CGCTGTCG
TGCATCACTTGTTTAAAAAAAAATCATGTAATGCACTGACTTTGTCATGGTGCTCTGTTCAAGAGTGTGAG-TAACTGTA
TCAGCGATTGGAATTCTGTTGTTTCTGTTTCTTGATTATATCTTCATGGGCGTAGTCTGATGTTTGGCGTATGCAAGTTC
AGCA----------------------------------------------------------------------------
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>chr3B_385
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----------------------------------------------------------------GGCGTTTTGGTGGCCG
AGCTACCTAGAGGCCGGTATCTAGGTCATGGCGTATCGCGCTATGATGTGTGCTGGCTTGTTTCTGTTTTCTTATACAAT
CACCATTAAGTTGAAATACATCGGTGCCATGACCCTCCCGGTGCTGTGTTTGTACATGGGCCTGATGTTCAGTGGCTTGT
GCACGGATGTTATGTACCTACTGGGCCGTTTTAAATGTCGCACGAGTAGTTTGGCTGTTGGGTGATTAATAATGTTTTTG
ATGGGCCCA-----------------------ATGTACTTCGACGGTGAGCAGCTTTTCTGCCTCGCTAGACCATTCAAG
CATTCATCGCCTTCTCATGGCAA---GGTGTGCGACGGATCACCATGCATGGGCTGGAGTTCTTTTTCGAGGAAGCCTTT
ATCAGGGTAAGCTCCATCTGATCTTACACTTTAGGATATTTTGTTCTAGAGCTGGGAACAAGTTCTGCCTGTAGTGTAGA
GCA--------------------T-GTTTCCACTGCCCCATTGTGTTAGATCTGAAAAAGGTGATTTCCCGTGATTCATT
GCAGATTTATGAGTGATTTATTCCCATGGTGGATGTCGGTGTTCTTTTAGGGGGA------GATACCGTTGTTGCATGTT
GTGGAATAGGTTGTTGTTTCAATCCATGAAGATCGCCGGGACCGCAG-GATTTCATTTCCTCATAACTCAGAACCCACAA
CTAGCGTCATGG--------------------------------------------------------------------
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-------------------------ATGCAGAGCACTACCTTGAGGATGCAGTGCTGTATG-GAGACAAGATTAACTCAT
ACAACGGTGCTAATGAGG--------------------------------------------------------------
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>chr7A_387
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------------------------------------------------------------------CGTTTTGGTGGCCG
AGCTACCTGGAGGCTGGTACCTAGGCAGTGGTTTATCGCGCTACAATGTGTGCTGCTTTATTTCCATTTCCTTATTCAGT
CGCCATTAAGTTGAAATACATCGGTGCCATGATCT--CCGGTGCTGTGTTTGCACACGGGCCTGATGTTCACTGTTTTCT
GCACAGACGTCATGTACCTCCGGG-CTGTTTTAAATGTTGCACGAGTAGGTGGGTCGTTGGGTGATTAATAGGATGACTA
TACGTC-----------------------------------------GAACAGCTTTTCTGCCTCGCTAGGCCCGGCGGC
CATTCATCGT-TTCTCGTGGCAGCTGGGTTTGCGACGGATCGCCATGGATGGGGTGGAGTTTTTCTTCGAGGAAGCCGA-
ATTAGGGTAAACTACATCCGATCTTTCAATTTAGACTAGTTTGTTCTTGAGCTGGGAACAAGTTGTGCCTGTATAGCATG
TTTCCTACGGTAGCTATCGTTTTT-GGTTCCACTGCCCCATCGTGTTAGATTTGAAAAGGATGACTTCCTGTGGTTTGTT
GCAGATTG-----------GTTCCCAGGGTGGATGCCAGTGATCTTTTAGGGGGA------GATATCGC-------TGCT
GTGGAATCGGTCGTTGCTT-------------------------------------------------------------
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-------------------------------------------------------CAACCCAAGCAAGATTTTCAAGATT
GATTTTCAGTACTGCCGATGCTCGAAATTCAGTTTGCTAGCTTAATAATCAGC---------------------------
TGTTTGTCAAATGGAAGATTTTCCGAACTGCTTGTGCCTGCGTAGTTGTGAGCTTGTTTCTATGTTTGTGTTCGCT--CG
TTCATCACTTGT-TTAAAAAAA-TCGTGTAATGCACTGACTTTGTCATGGTGCTCTGTTCAAGAGTGTGAGTTAACTGTA
TCAGCGATTGGAATTCTGCTGTTGCTGTTTCTTGGTTATATCTTCATGGGCGTAGCCTGATGTTTGACGTACGCAAGTTC
AGCA----------------------------------------------------------------------------
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>chr4D_388
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-------------------------------------------------------------------GTTTTGGTGGCCG
AGCTACCTGGAGGCCGATATCTGGGCCGTGGTTTATCGCACTACAATGTGTGCTGCTTTATTTTCATTTTCTTATTCAGT
CGCCATTAAGTTGAAATACATCGGTGCCATGATCT--CCGGTGCTGCGTTTGTACACGGG-CTGATGTTCACTGTTTTCT
GCACAGACGTCATGTACCTCCTGGGCTGTTTTAAATGTTGCACAAGTAGGTGGGTCGTTGGGTGATTAATAATGTTTCT-
ATGGGCCCATGTGAACCTGCATATAGCTTCCCATTTACTTCAAGAGTGCATATCTTTTCTGCCTCGCTAGGCCCGGCGGC
CATTCATCAT-TTCTCGTGGCAGCTGGGTTTGCGACGGATCGCCATGGATGGGGTGGAGTTCTTCTTCGAGGAAGCCGA-
ATCAGGGTAAACTACATCCAATCTTTCAATTTAGACTAGTTTGTTCTTGAGCTGGGAACAAGTTGTGCATGTATAACATG
TTTCCTACGGTAGCTATCGTTTTT-GGTTCCATTGGCCCATCGTGTTAGATTTGAAAAGGATGATTTCCTGTGGTTTGTT
GCAGATTG-----------GTTCCCAGGGTGGATGCCAGTGATCTTTTAGGGGGA------GATATCGC-------TACT
GTGGAATCGGTCGTTGCTT-------------------------------------------------------------
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-------------------------------------------------------CAACCCAAGCAAGATTTTCAAGATT
GATTTCCAGTACTGCTTGTGCTTGAAATTCAGTTTGCTAGCTGAATAATCAGT---------------------------
TG-TTGTCAAATGGAAGATTTTCAGAACTGCTTGTGCTTGCGTAGTTGTGAGCTTGTTTCTATGTTTGTGT-CGCT--CG
TTCATCACTTGT-TTAAAAAAA-CCGTGTAATGCACTGACTTTGTCATGGTGCTCTGTTAAAGAGTGTGAGTTAACTGTA
TCAGCGATTGGAATTCTGTTGTTGTTGTTTCTTGGTTATATCTTCATGGGCGTAGTCTGATGTTTGACGTATGCAAGTTC
AGCA----------------------------------------------------------------------------
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>chr1D_1887
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--------------------------------------CTTGCTACGGAGCAACTGAGAAATGTGAAAACATTGCTGGAG
CCTATTGCTGCTATATGCGAAGGCATGGGGCTATCTGATAGAGAAATGGCAGTTGATTCTGCAGGTTCGGAGATTGGAAA
TAAACAACATTTT-----AGCAAAACAAGCACGTAGTGCATCACAAGGTTCCGATAGTTTTGCAGCACCTTCAAAGAAGA
GGCCCATCGGGTCGCCCTAGCACAAGTCACGACAAGGCGCCATATAAGCAGCCATCTATAAGGACTAGGTTTTGTTCCAT
ATGGAGGGGTCAAG--------GTCACAAGAGTACCACTTGTCCTCAACGAGGTGATCTTCCAAAGGCACCGA-------
-------TGCTCCAGATGCAACCTACGAGGTCACAGGAAGAACACTTGCACCAACCAACCCAAGCCAGACTTTCAAGGTT
GATTTTCAGTACGGCTTGTGCTTGAAGTTCAGTTTGCTAACTGAATAATGAGTTTTTTTTTTGCGGGTAGAATAATGAGC
TGTTTGACAAGTGGACAACAACA--------------TTGCGTAGTTGTGAGCTTGTTTCTTTGTTTGTGT-CGCTATTG
TGCATGGCTTAG-TTAAAAATA-ACATGTGATGCACTGACTTTGTGACGTTGCTGTGTTCAAGAGTGTGGTTTAACTGTA
TCAGCGATGGAAATTCTGCCGTTGTTGTTTCTTAATTATATCTTCATGAGCCTGGTCTGATGTTTGACGTATGCAAATTC
AGCGACAAGAACCTTTCTATT-----------------------------------------------------------
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----------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SS----SS----------------
---------S------------------------------------------------------------S--S------
------------------------------S--S-----S---S---S--------------S----------S------
-----S-----S-----S---------S--------------S-------------------------------------
----------------------------------------------------S-------------------------S-
-SS-S--S----------------------------S----------------S--------------------------
------SS-------------------------------------------SSSSSS-----------------------
------------------------S---------------------S-S-------------------------------
----------------------------------------S---------------------------------------
-------------------------------S-S---S-----S-SSS------------------------S------S
--S------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S------S------S-------------S------
---S-----------S----S--S---S------------------------S-----------S---S----SS--S--
-------------SSSSS------S-----S-S--------S-S-------S----------------------------
-S--S-SS------------------S-S---S-----S---S-SS-----------SS---------S-----------
---S----------SSSSSSSS----------S-S---S-----S------S---------------------SSSSSSS
SSSSSSS-------------------S----S--------------------S---------------------------
---------------------------------------------------S----------------------------
-------------S---------------------------S----------------S------S--------------
---------------S-------------------S----S--------------------------S--------S-S-
SS---------------------------------------S---------------S------------S---------
--------S----S--SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_46
--------------------------TGCCGCTCTAGATTTTGCCA----------------------------------
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>reverse_1265
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----------------------------------------------------------------GCAACCGTCAGAAAGG
AGGA----------------------------------------------------------------------------
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>forward_1228
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--------TGCTAGTGAGGTTCGTTGCC----------------------------------------------------
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>reverse_2784
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---------------------------------------------------------------CATCGCAATCTGGGCAC
ATG-----------------------------------------------------------------------------
----------------------------------------------------------------------
