>input_sequence_67886
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--ATGAGGTACGGCGAGGTGGCGCACTTCAGCCACCCGCAGCACCGGCTCCGGCTGGAGCAACTGGACACGCCGTTCCGG
TGCGACGGCTGCAAGGAGGTCGGCATCGGCGCGCGTTACCGCTGCCCCGTCCAGGGCTGCGCCGCCGACCACGACCTCCA
CCGCCAATGCGCGCTCCCGCTCTCCCCGCCGCCGCCGCCGCTCCGGCACCCGTTCTACCCCAAGTGCGCCTTCCACTTCA
TGGCGCGCGCGCCGGGCGCCCCCGGGACGCGCTACTGCAACGCGTGCGGCCGCGACGTCGCCGGCTTCGTCTACCACTGC
CGCGCCTGCGGCTTCGACCTGCACCCCTGCTGCGCCACGCTGCCGCACGCCCTGGACGCCAGCGACCGCGGTGGCAGGGT
CGGCGTGAGGCTGTACCTGCACCCCAAGGCCGAGGCCGCGTGCCACCGGTGCGGCCACCGCGGGCGGAGCTGGACGTACC
GAAGCCACTGCAAGAGCTACAGCCTCCACGTGGCGTGCGTGATGGACATGGTCGTCGAGAGCTGGAGCGGCATCGGGCGG
AGCAAGGGCGCTAGCGCCGGAGGAAGGGGCGTGTACGACGGTGCGTTGGTGGCGGGGAGCGGCGGGTACAGGGTGCCGGT
GATAAGGGGCGCGGCGAAGAGCAGCCACGCGAGCCGGGGAGGGTCGTACTGGGGGATGAGGAAGGGCAAGGTGAAGCGCT
GCTGCGAGATCGCCGGGTTCGCGGCGCAGGTGGTCATCTCCGCGGTGCTCGGTGACCCCACCGCGCTCATAGCCGGCGTC
GTCGGCTCGCTCATAGCGCGGTGA--------------------------------------------------------
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>chr5A_1_TraesCS5A01G061500
GCATGTTCTGGGCTCGTGGCGACCATGATATAGACTACCACTTCAGTGCTGATGGGTGCATGTTTCAACTTGGAGCAGTT
GTTTTTCA----TATTAAACACAGAAGAACGTGACGATCCGGATGCAATAATTTCAGCATCTTCTTTATCTGTGATCATC
AGCCCTAATTCCTGCCTGCCTGCACAAGTTATTCGATCCTGCAGCACCCAAATGCTGGCTGATAACAACAG-TTTGCACG
CTTTTAGGGACATTCCAACCGTATTCTCCTATGTAAATCAGGGAATTTGTGCGTGCTCATCCTCGTTATCAAGGGAAGAA
TAGTATGTGGGTGTTAATTGTTAACATTGAGTGCCGGGTGCTTCTGAACTTGTTGAAAGCAGGAATAGTGGGCAAGAGAA
GAACCGGAATAGTCTGACGCTGGAGGAACAGATGCCTGCAACAGCACACAAAAAAGAGATGCCCTGTGTTTTGTCAGTCA
TACAAACCG--C---CCCTCCAGTTGGGAAAAATGTGGTCGCAGATGCACTACTCTACTCGAAATGTTTAGCCATATATG
CCTGAACAAGTACATAAAACAGTAGAATTTCTTAAAATTGTGCTGAAACACTCTATTTAGAATGAGCAAATTTCAATCCA
TGGCAC-TCTGTAACAAATATACTTAAAACTTCGGAATAAAATGGGGCTACGTGCATCAATCGACGAAGAAACAAAG---
---------------------------TTTTTAACAAATATATTTGGCCATACATGATCATAGTACTGTCTTTGATATAT
TAGAGCAACCCCAAACACCTAAATCCAAAACGAAGAGAACATATCCTATTCTATTCCTCGACAACCTTCATCTCCAAGAC
TTGTATAAAAGTTAAAACCAAGCCAACCAACTCCA-GGATCTCCTCTATCAAGTATCAACATGCATTGCATATTTGCATT
GCACCAGTATAAATCTTCCTTGCTGCCAGCTCGACCAAAGAACACAAAAGAATAGCACCACCTCGGAAGCTAATCAGAGG
CCATGAGGTACGGCGAGGTGGCGCACTTCAGCCACCCGCAGCACCGGCTCCGGCTGGAGCAACTGGACACGCCGTTCCGG
TGCGACGGCTGCAAGGAGGTCGGCATCGGCGCGCGTTACCGCTGCCCCGTCCAGGGCTGCGCCGCCGACCACGACCTCCA
CCGCCAATGCGCGCTCCCGCTCTCCCCGCCGCCGCCGCCGCTCCGGCACCCGTTCTACCCCAAGTGCGCCTTCCACTTCA
TGGCGCGCGCGCCGGGCGCCCCCGGGACGCGCTACTGCAACGCGTGCGGCCGCGACGTCGCCGGCTTCGTCTACCACTGC
CGCGCCTGCGGCTTCGACCTGCACCCCTGCTGCGCCACGCTGCCGCACGCCCTGGACGCCAGCGACCGCGGTGGCAGGGT
CGGCGTGAGGCTGTACCTGCACCCCAAGGCCGAGGCCGCGTGCCACCGGTGCGGCCACCGCGGGCGGAGCTGGACGTACC
GAAGCCACTGCAAGAGCTACAGCCTCCACGTGGCGTGCGTGATGGACATGGTCGTCGAGAGCTGGAGCGGCATCGGGCGG
AGCAAGGGCGCTAGCGCCGGAGGAAGGGGCGTGTACGACGGTGCGTTGGTGGCGGGGAGCGGCGGGTACAGGGTGCCGGT
GATAAGGGGCGCGGCGAAGAGCAGCCACGCGAGCCGGGGAGGGTCGTACTGGGGGATGAGGAAGGGCAAGGTGAAGCGCT
GCTGCGAGATCGCCGGGTTCGCGGCGCAGGTGGTCATCTCCGCGGTGCTCGGTGACCCCACCGCGCTCATAGCCGGCGTC
GTCGGCTCGCTCATAGCGCGGTGACCACTGCCGGGCGCCGCCGTGCTCTTGGAGTGAAACATGTTGTAAATACTA-----
--CTCCTGCTCCGTACTCCGGACGTGACCTACGTGGCGCTGCATGCAAATTATATAACCGGTGTCCACGTCAGTGGATCA
ATGCCC-CCGCGTGTCAGTGTAGCGTAGTTCTCTTTAAAACCTTATTATCGTGTTCCGGAGAAAAAGGTAAAAAAATCCT
CAATCGTGTTGCGGTGATTGTCCCACAGTTTGGCACTTTGGCCCCTGCCAGCGTTGGTGAGGCCGAGGGTCCAATCTTCC
CGTCCGCCGCTCCG------------------GTGTATGGTTAGAGCATCTACGAGCA-----GACAAATCCGGCACCCT
AAAAGTTTATGGAC---------GTGACCGCTAACAGCGTCAAACGGTCTCTTATATAGTCAATCGAGTAGTAGCACACC
TTAAATCTAAACCATTAAATTCATGTATGTGGATCATATATAGCACAAATTCATCATAATTCAACAGTTTTATAAGGCAA
TAAAGTAAAAGAAGTCACAGTTTAACAATTTGGACATGCCAAAATGAAATTTAAATATGAGCGTGACAGATCACCCCCTG
GACGGATCACTCATCAGACATCATCCATGATGGCGAACCAACCTATGGTTGGATGGTTAGAGGAATTGTGGTATCCCCAG
CCCATCAGGGTTCAAATCGTGGTGCTCGCATTTATTCCTGGATTTATTTCAGGATTTCCGGCGATGCGCATTCAGTGGGA
GGAGACGTTCCCGTCGACGACGAGGTGCTTACGGTGACTTCGTAAATTTCAAGATGATATGCCGGCTCAGTCTTTCGGAG
GTGCTCATAGGGGTAGGGTGTGTGTGTGTGCGTTCATAGGGGTGAGTGTATGCGCGTGTATATGAGCGCTTGTGTCTGTA
CTGATGTTCAAAAAAAAGACATCATCCATGATGCCTGCTCCGCCAACCATCCTTGCCGCCTGCTCTACCTCCATCCGTTC
CGTTTTCGTTGCTGCCATTTGTTC
>chr5D_1
GCATGTCCTGGGCTCGTGGCGACCATGATATAGACTACCACTTCAGTGTTGATGGCTGCATGTTTCAACTTGGAGCCGTT
GTTTTTCGTACTTATTAAACACAGAAGAATGTGACGATCCGGAGGCAATAATTTCAGCA---TCTTTATCTGTGATCATC
AGCCCTAATTCCTGCCTGCCTGCACAAGTTATTCGATCCTGCAGCACCCAAATGCTGGCTAATAACAACAGTTTTACACG
CTTTTAGAGACATTCCAATCGTATTCTCTTATGTAAATCGGGGAATTTGTGCGCGTTTATCCACATCATGAAGGGAAGAA
TAGTAGGTGGGTGTTAAGTCCTAACATTGAGTGCCGGGTGCTTCTGAACTTGTTGAAAGCAGGATTTATAGGCAAGAGAA
GAACCGGAATAGTCTGACGCTGGAGGAACAGATGCCTGCAACAGCACACAAAAAAGAGATGCCCTGTGTTTTGTCAGTCA
CACAAACCG--CCCACCCTCCAGTTGGGAGAAATGTGGCTGCAGATGCACTACTCTACTCAAAATGTTTAGCCATATATG
CCTGAACAAGTACATAAAACAGTAGAATTTCTTAAAATTGTGCTGGAACACTCTATTTAGAATGAGCAAATTTCAATCCA
TGGTACATCTGTAACAAATATATTTAGAACTTTGCAATAAAAGATTT--------ATCAATCGACGCAGAGGCTAGGGAT
ATTTTTCCCCTTTTCAGAGACAAA-GTTTTTTAACAAATATATTTGGCCATACATGATCATAGTACTGTCTTTGATATAT
TAGAGCAACCCCAAACACCTAAATCCAAAACGAAGAGAACATATTCTATTCTATTCCTCGACAACCTTCATCTCCAAGAC
TTATATAAAAGTTAAAACCAAGCCAACCAACTCCA-GGATCTCCTCTATCAACA--------------------TGCAGT
GCGCCAGTATAAATCTTCCTTGCTGCCAACTCGACCAAAAAACACAAAAGAATAGCACCACCTCGGAAGATAATCTGAAG
CCATGAGGTACGGCGAGGTGGCGCACTTCAGCCACCCGCAGCACCGGCTCCGGCTGGAGCAACTGGACACGCCGTTCCGC
TGCGACGGCTGCAAGGAGGTTGGCATCGGCGCGCGTTACCGGTGCCCCGTCCAGGGCTGCGCCGCCGACCACGACCTCCA
CCGCCAATGCGCGCTCCCGCTCTCCCCGCCGCCGCCGCCGCTCCGGCACCCGTTCTACCCCAAGTGCGCCTTCCACTTCA
TGGCGCGCGCGCCGGGCGCCCCCGGGACGCGCTACTGCAACGCGTGCGGCCGCGACGTCGCCGGCTTCGTCTACCACTGC
CGCGCCTGCGGCTTCGACCTGCACCCCTGCTGCGCCACGCTCCCGCACGCCCTCGACGCCAGCGACCGCGGAGGCAGAGT
CGGCGTGAGGCTGTACCTGCACCCCAAGGCCGAGGCCGCGTGCCACCGGTGCGGCCACCGCGGGCGGAGCTGGACGTACC
GGAGCCACTGCAAGAGCTACAGCCTCCACGTGGCGTGCGTCATGGACATGGTCGTCGAGAGCTGGAACGGCATCGGGCGG
AGCAAGGGCGCTAGCGCCGGAGGAAGGGGCGTGTACGACGGCGCGTTGGTGGCGGGGAGCGGCGGGTACAGGGTGCCGGT
GATAAGGGGCGCGGCGAAGAGCAGCCACGCGAGCAGGGGAGGGTCGTACTGGGGGATGAGGAAGGGCAAGGTGAAGCGCT
GCTGCGAGATCGCCGGGTTCGCGGCGCAGGTGGTCATCTCCGCGGTGCTCGGTGACCCCACCGCGCTCATAGCCGGCGTC
GTCGGCTCGCTCATAGCGCGGTGACCACCGCCGGCCGCCGCCGCGCTCTTGGAATGAAACATGTTGTAAATACTA-----
--CTCCTGCTCCGTACTCCGGACGTAACCTACGTGGCGCTGCATGCAAATTATATAACCGGTGTCCACGTCAGTGCATCA
ATGTCCCCCACGTGTCAGTGTAGCGTAGTTGTCTTTAAAACCTTATAATCGTGTTCCGGAGAAAAAGGTG-AAAAATCCT
CAATCGTGTTGCTGTGATTGTCCCCCAGTTTGGCACTTTGGCCCCACCCAGCGTTGGTGAGGCCGAGGGTCCAA------
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>chr5B_1
GCATGTCCTGGGCTTGTGGCGACCATGATATAGACTACCACTTCAGTGTTGATGGCGGCATG-TTCAACTTGGAGCCGTT
GTTTTTCA----TATTAAACACAGAAGAACGTGACGATCTGGAGGCAATAATTTCAGCATCTTCTTTATCTGTGATCATC
AGCCCTAATTCCTGCCTGAATACACAAGTTATTCGA-CCTGCAGCACCCGAATGCTGGCTGATAACAACAGTTTTTCACG
CTTTTAGAGACATTCCAATCGTATTCTCTTATGTAAATCGGGGAATTTGTGCGCGTTTATCCTCATCATGAAGGGAAGAA
TTGTAGGTGGGTGTTAAGTCTTAACATTGAGTGCCGGGTGCTTCTGAACTTGTTGAAAGCAGGACTTGTAGGCAAGAGAA
GAACCGGAATAGTCTGACGCTGGAGGAACAAATGCCTGCACCAGCA--CAAAAGAGAGATGCCCTGTGTTTTGTCAGTCA
CACAAACCAACC---CCCTCCAGTTGGGAAAAATGTGGTTGCAGAAGGACTACTCTACTCGAAATGTTTAGCCATATATT
CCTGGACAAGTACATAAAACAGTAGAATTTCTTAAAATTGTGCTGAAACACTCTATTTAGAATGAGCAAATTTCAATCCA
TGGTACATCTGTAACAAATATATTTAGAACTTTGCAATAAAGGATTT--------ATCAATCGGCGCAGAGGCTAGGGAT
ATTTCTCCCCTTTTCAGAGACAAAAGTTTTTTAACAAATATATTTGGCCATACATGATCATAGTACTGTCTTTGATATAT
TAGAGCAACCCCAAACACCTAAATCCAAAACGAAGAGAACATATTCTATTCTATTCCTCGACAACCTTCATCAGCAAGAT
T----TAAAAGTTAAAACCAAGCCAACCAACTCAATGGACCTCCTCTATCAACA--------------------TGCATT
GCGCCAGTATAAATCTTCCTTGCTGCCAACTAGACCAAAAAACACAAAAGAATAGCACCACCTCGGAAGATAATCTGAAG
CCATGAGGTACGGCGAGGTGGCGCACTTCAGCCACCCGCAGCACCGGCTCCGGCTGGAGCACCTGGACACGCCGTTCCGG
TGCGACGGCTGCAAGGAGGTCGGCATCGGCGCGCGTTACCGGTGCCCCGTCCAGGGCTGCGCCGCCGACCACGACCTCCA
CCGCCAATGCGCGCTCCCGCTCTCCCCGCCGCCGCCGCCGCTCCGGCACCCGTTCTACCCCAAGTGCGCCTTCCACTTCA
TGGCGCGCGCGCCGGGCGCCCCAGGGACGCGCTACTGCAACGCGTGCGGCCGCGACGTCGCCGGCTTCGTCTACCACTGC
CGCGCCTGCGGCTTCGACCTGCACCCCTGCTGCGCCACGCTCCCGCACGCCCTCGACGCCAGCGACCGCGGAGGCAGGGT
CGGCGTGAGGCTGTACCTGCACCCCAAGGCCGAGGCCGCGTGCCACCGGTGCGGCCACCGCGGGCGGAGCTGGACGTACC
GGAGCCACTGCAAGAGCTACAGCCTCCACGTCGCGTGCGTCATGGACATGGTCGTCGAGAGCTGGAACGGCATCGGGCGG
AACAAGGGCGTTAGCGCCGGAGGAAGGGGCGTGTACGACGGCGCGTTGGTGGCGGGGAGCGGCGGGTACAGGGTGCCGGT
GATAAGGGGCGCGGCGAAGAGCAGCCACGCGAGCAGGGGCGGGTCGTACTGGGGGATGAGGAAGGGCAAGGTGAAGCGCT
GCTGTGAGATCGCCGGGTTCGCCGCGCAGGTGGTCATCTCCGCGGTGCTCGGTGACCCCACCGCGCTCATAGCCGGCGTC
GTCGGCTCGCTCATAGCGCGGTGACCACCGCCG---GCCGCCGCGCTCTTGGAATGAAACATGTTGTAAATACTAAATAC
TACTCCTGCTCCGTACTCCGGACGTAACCTACGTGGCGCTGCATGAAAATTATATAACCGGTGTCCACGTCAGTGGATCA
ATGTCC-CCACGTGTCAGTGTAGTGTAGTTCTCTTTAAAACCTTA--ATCGTGTTCCGGA--AAAAGGTG-AAAAATCCT
CAATCGTGTTGCGGTGATTGTCCCACAGTTTGGCACTTTGGCCCCTCCCAGCGTTGGTGAGGCCGATGGTCCAATCTTCC
CGACCGCCTCTCCGGCCACGGATGAGTCCCTAGTGTATGGTTAGAGCATCTAGAAGCGAACTTGACAAATCCAGCACCTT
TAACGTTTACTGGGGCGTTGAGAGTGACCGTGGACAGCGTTGGGAGGTCTCTCATATGGCCGATCG-GTAGCACCACACC
TTAAATCTAAACCTTCAAATCCATGCACATGGATCATATAATACAAATT---ATCACAATTTAATAGTTCTATAATGCAA
CAAAGCAAAATAAATCATAGTTCAACAATTTCGACATGTCAAAATGAAATTCAAGTCTGAG-------------------
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>SNPs
------S-----------------------------------------S------S--------------------S---
-------------------------------------------S------------------------------------
---------------------------------------------------------------------------S----
-------S----------S---------S----------S-------------S-S-S------S-S--S----------
-----S-----------S-S--------------------------------------------S-S--S----------
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S--------------------------------------S----------------------------------------
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---S------------------S---S-----S-S-------SSSSSSSSSSSSS-----------S---SS-S-S----
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--------------------------------------------S-----------------------------------
--S-------------------------------------------------SSSSSSSSSSSSSSSSSSSSSS------
--S-------------------------S----------S-----------------------------S-----S--S-
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-----------------------------------------S--------------------------------------
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-----------------------------------------S-----------S-----------------S--------
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-S--------------------------------------S-------------------------S-------------
-----------------------------------------S--------------------------------------
----------------------------------S---------------------------------------------
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----------------------------S-----S--------S---------S--------------------------
-------------------------S------------------------------------------------------
---S-----S------------------------------------S----------------------SS---------
----------------------------------------------S---------------------------------
--S-----S-------------------------------------------SS---S--------------S-----S-
S--S-----SS-SS----------------SSS-------SSSSS-------S----S-S-S----S----S-S------
-------------S-S----S----S-SS-----------SSS--S-SSSSS----S----S--S----S-----S----
S----S----S--S---S----S--------S------S------------S--S-S----SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS
>forward_56
------------------------------------ACCACTTCAGTGCTGATGGG------------------------
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>reverse_2010
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---------GCGTGTCAGTGTAGCGTAGT---------------------------------------------------
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