>input_sequence_67872
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-------------------------------ATGGAGCGGCGGCCAGAGCTGCGGCGGTCGATGACGCTCTCGGAGCAGC
TGTCCAGGCCCGACCCGGCCATCCGCGAGTTCCTCAAGATCCCCGACGACGATAGCCACCTGAGCGCTGACGCCGGAGGA
GGTGGAGGCAGCGGCGGCATGATCAACTGGAAGCCGTTGCGCGACCGTCTCCGGCTCCGGCGCTCCGTGAACGCCTGGTC
CAGCCCGTCGGAGAGGCCCAGCACGGCGGACGGCGCCGGTAGCCTGAAGAACAGCGGCAGCGGCAGCAACCGCAGCCACA
AGTACATCTACGCGCAAGGTGAGGCCACGGCGGCCTTCTGCCGCACCTCCTCGCTCCGCCAGACTCCCGCATTCTCGCGC
GCGGCCTCCACTCGGGTCGGTTCTAACGCCACGATCGGGCGCTCTCCCCCCGTGGTCGACGGCGAGGGCTCCGAGGACGA
GTCAGAGCACGATGAGGACGAGGAGGAAGGCAAGGAGGAGGAGGACGCGCCGACGGCGCAGATGTCCCTGATGGCGCTGC
TGGAGCAGACGGACAGCTGGGACGAGGAGGAGGAGGAGGAGGAGCAGCAGGCCGCGGCAGGCGGCGGGGCCAGCAGCAAG
AACGCGCACGCCGAGGAGGAGGAGGAGGACGGCGAGGG---------GCGCGAGGAGGAGATGGTGCACGTGTGCTGCGT
GTGCATGGTGCGGCACAAGGGCGCGGCCTTCATCCCGTGCGGCCACACATTCTGCCGCCTCTGCTCCCGGGAGCTCTGGG
TCAGCCGCGGCAACTGCCCGCTCTGCAACGGCTTCATCCAGGAGATCCTCGACATCTTCTGA------------------
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>chr3A_1_TraesCS3A01G259800
CAACATTACTACTTCCTCTCTCGGATCCGGCTTGCCTGCTCCCTCTCCATGCTCCCATCCGTACTCCCACTTCATCCTAC
GACTGTTCTTTTCCCTTTTTCTTTTCTAATCTAATCATCTCTCCCCCTGATTTTCAGGGGATGGAGCCGGGCATTATTTT
CTTCCAATCAAATCAAGCCACGCATGCGGGAGCACGGATGGAAGCATGAGAAGGGAGCAGGCAAGTCTCGTCCTCCTCTC
TCTCTCTCTCTCTCTCGAAACGGAGGGAGTAGTAGGTAATTAGTACTTGGTTAATGTTGCATTGATATTAGACATGATAT
TAATTAGTGAAGGATACTAAACATGTTTAATGCTAAACATGTTTAAAGCTAAACGCCAGAGCGGATAGATGCGGTTGAAT
GAGTTTTGTTGG-ATCTCTGCAACTTGCTCTTTTTACGTTGGCATATATGCAATATGGATGATGACACAACTTGAAGTTT
TAGAGTT------------------------AATTTGGATTGTGTATGCACAATGGAATGAGATATATAAGCAAAACGAA
ACGATTTGTAGGTATCCAGCTTTAGGTTAGCTAGCTGCTGGAGAAGAGCAA-----------GGAAATCTTCTCTCGCAT
GTACGTAAGTAGGAGTACATCCAAATCCAAATATAGCAATATTCCAACTATAGCCGTTCTCGGCTAAGCATGGAGCTTTT
CTCCCCATCACACGCCCATCCACCTCATCGGCGCCGATCGTAGCCATGAGGCTCAATTCGACGCGTCCATTGATAACTGA
CTCACCGGAAATCACGGCTGGCGCCACTGTAATTTCGTATCCATGCCGCACGCTGCGGTGGCTGCAAACCG-----GAGT
TCAAAAGGCGCGGGAGCGCGGAGGCCCGCTCTGCCTCCTCTCCTCTTCCCCCATTCCTTGTACCACCACATCTCTCGACC
ATAAGGCGCAATCTCGATCCCTTCCACCT---------------------------CCAAGGGCACGCACACCCATTCGT
CCCACGCAGCGGCGGCGTCA---AAGGCGCGATGGAGCGGCGGCCAGAGCTGCGGCGGTCGATGACGCTCTCGGAGCAGC
TGTCCAGGCCCGACCCGGCCATCCGCGAGTTCCTCAAGATCCCCGACGACGATAGCCACCTGAGCGCTGACGCCGGAGGA
GGTGGAGGCAGCGGCGGCATGATCAACTGGAAGCCGTTGCGCGACCGTCTCCGGCTCCGGCGCTCCGTGAACGCCTGGTC
CAGCCCGTCGGAGAGGCCCAGCACGGCGGACGGCGCCGGTAGCCTGAAGAACAGCGGCAGCGGCAGCAACCGCAGCCACA
AGTACATCTACGCGCAAGGTGAGGCCACGGCGGCCTTCTGCCGCACCTCCTCGCTCCGCCAGACTCCCGCATTCTCGCGC
GCGGCCTCCACTCGGGTCGGTTCTAACGCCACGATCGGGCGCTCTCCCCCCGTGGTCGACGGCGAGGGCTCCGAGGACGA
GTCAGAGCACGATGAGGACGAGGAGGAAGGCAAGGAGGAGGAGGACGCGCCGACGGCGCAGATGTCCCTGATGGCGCTGC
TGGAGCAGACGGACAGCTGGGACGAGGAGGAGGAGGAGGAGGAGCAGCAGGCCGCGGCAGGCGGCGGGGCCAGCAGCAAG
AACGCGCACGCCGAGGAGGAGGAGGAGGACGGCGAGGG---------GCGCGAGGAGGAGATGGTGCACGTGTGCTGCGT
GTGCATGGTGCGGCACAAGGGCGCGGCCTTCATCCCGTGCGGCCACACATTCTGCCGCCTCTGCTCCCGGGAGCTCTGGG
TCAGCCGCGGCAACTGCCCGCTCTGCAACGGCTTCATCCAGGAGATCCTCGACATCTTCTGATCAAACCAACCTCGTCTT
CCTGTCTGTCCGTCCGACTCTTGATTCTTCGGAGAAATTGTGCGGGATCATTCATTCACGCGCCCGCGAGTACCGCGGTT
GATGGCGAGTGAGCGGCCAACGCGCCACCCCGCTCTGAAACCGAGGCCCGTATCATATCGTAGGTAAATTGGTACATCAA
TCAACATGATGACACTCTGTCTGCGATTTATTTCTGGAATGTGATTAACTGTATCAACTGTACTCAGTAATGTTTTGGAA
TAAGAGTGGGAT-GCCTACAATGAAAGTACATTGGAATAAGAATGGTCGTGCCGGTGACGGATCTAAGGGGAGGGGGAGC
ATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGCTTGAG
AAATCCTCTCTGATGAAGTATGCGTTTGGCTCCCCCTTTAATTGTTGCGTCGCTCCTGTTAGTAAACAATTGCAAGAATG
AATGAACCGTGTCAATTTCATTGATAGACAGATCGTATATACAGGGAGCAGACGCATCCGATAGTGCTGTGTGTGGGAAA
CGGCGTGACGATTGCCGAATCGTAATCGCACTTGCACTTTGTACAAGCGAGGATTAACCTCAATTACGTTAATAATTACT
TCCTCTGTCTTATAATATAAGAACATTTTTGACACTACACTAGTGTCAAAAACGTTCTTATATTACGGGACAGAGGGAGT
AAATCCTAACAGCTCCAACTCGAGAGCTCCCATTTGCATACCACAGGCGGCAAATGGCGGAGACGACACACTGGACACAA
AACGCCTTAGTAGCATCTACGCA
>chr3B_273
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--------------------------------TAGGTAATTGTTACTTGGTTAATGTTGCATTGATATTAGACATGATAT
TAATTAGTGAAGGATACTG----------------AACATGTTTAAAGCTAAACGCCAGAGCG-ATAGATGCGGTTGAAT
TTTATTTGATCTTATCTCCGTAACTCGCTCTTTTTACGTTGGCATGGATGCAGTATGGATGATGACACGACATGAAGTTT
TAGAGTTTTTTTTTTGCGGGAATTTAGAGTTAATTTGGGTTGTGTATGCACAATGGAATGAGAGATATAAGCA-----AA
ACGATTTGTAGGTATCCAGTTTTAGGTTAGCTAGCTGCTGGAGAAGAGCATAAAAATTTCATGGAAATCTTCTCTCGCAT
GT--GTAC----------------ATCGAAATATAGCAATATTCCAACTATAGCCGTTCTCGGCTAAGCATGGAGCTTTT
CTCCCCACCACACGTCCATCCACCTCATCGGCGCCGATCGTAGCCATGAGGCTCAACTCGACTCGTCCATTGACAACTGA
TTCACCGGAAATCACGGCTG---------TAATTTCGTATCCATGCCGCAGGCTGCGGTGGCTGCAAACCGGAGTTGAGT
TCAAAAGGCGCGGGAGCGGGTCT--------------CTCTCCTCTTCCCCCATTCCTTGTACCACCATCTCTCTCGACC
ATAAGGCG----------------CACCACCCTAGCGCCTCGCCTCCATCTCCACACCAAGTATACGCACACCCATTCGT
CCCACGCAGCGGCGGCGGCGGCCAAGGCACGATGGAGCGGCGGCCAGAGCTGCGGCGGTCGATGACGCTCTCGGAGCAGC
TGTCCAGGCCCGACCCGGCTATCCGCGAGTTCCTCAAGATCCCCGACGACAACAGCCACCTGAGCGCTGACGCCGGAGGA
GGTGGAGGCAACGGCGGCATGATCAACTGGAAGCCGCTGCGCGACCGTCTCCGCCTCCGCCGCTCCGTGAACGCCTGGTC
CAGCCCGTCGGAGAGGCCCAGCACGGCGGACGGCGCCGGTAGCCTGAAGAACAGCGGCAGCGGCAGCAACCGCAGCCACA
AGTACATCTACGCGCAAGGTGAGGCCACGGCGGCCTTCTGCCGCACCTCCTCGCTCCGCCAGGCTCCCGCATTCTCGCGC
GCGGCCTCCACACGGGTCGCTTCCAACGCCACCATCGGGCGCTCTTCCCCCGTGGTCGACGGCGAGGGCTCCGAGGACGA
GTCGGAGCAGGACGAGGACGAGGAGGAAGGCAAGGAGGAGGAGGACGCGCCGGCGGCGCAGATGTCCCTGATGGCGCTGC
TGGAGCAGACGGACAGCTGGGAC------GAGGAGGAGGAGGAGGAGCAGGCCGCGGCAGGCGCCGGGGCCAGCAGCAAG
AACGCGCACGCCGAGGAGGAGGAGGAGGACGGCGAGGG---------G---------GAGATGGTGCACGTGTGCTGCGT
GTGCATGGTGCGGCACAAGGGCGCGGCCTTCATCCCGTGCGGCCACACATTCTGCCGCCTCTGCTCCCGCGAGCTCTGGG
TCAGCCGCGGCAACTGCCCGCTCTGCAACGGCTTCATCCAGGAGATCCTCGACATCTTCTGATCAAACCAACCTCATCTT
CCTATCTGTCCGTCCGACTCTTGATTCTTCGGAG-------------------------------------------GTT
GATGGCGAGTGAACGACCAACGCGCCACCCCGCTCTGAAACTGAGACCCGTGTCATATCGTAGGTAAATTGGTACATCAA
TCAACATGATGACGCTCTGTCTGCGATTTATTTCTGGAATGTGATTAACTGTATCAACTGTACTTAGTAATGTTTTGGAA
TAAGAATGGGAAAGCCTACAATGA--------------------------------------------------------
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>chr3D_405
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----TTTGTTGG-ATCTCCGCAACTCGCTCTTTTTACGTTGGCATAGATGCAGTATGGATGATGACACGACATGAAGTTT
TAGAGT------------------------TAATTTGGATTGTTTATGCACAAGGGAATAAGAGATATAAGCA-----AA
ACGATTTGTAGGTATCCAGTTTTAGGTTAGCTAGCTGCTGGAGAAGAGCATAAAAATTTCATGGAAATCTTCTCTCTCAT
GTACGTAC----------------ATCCAAATATAGCAATATTCCAACTATAGCCGTTCTCGGCTAAGCATGGAACTTTT
CTCCCCACCACACGTCCATCCACCTCATCGGCGCCGATCGCAGCCATGAGGCGCAACTCGACTCGTCCATTGACAACTGA
TTCACCGGAAATCACGGCTGGCGCCACTGTAATTTCGTATCCATGCCGCAGGCTGCGGTGGCTGCAAACCG-----GAGT
TCAAAAGGCGCGGGAGCGGGGAGACCCGCTCTACGTCCTCTTCTCTTCCCCCATTCCTTCCACCACCATCTCTCCCGACC
ATAAGGCGGAATCTCGATCCCTTCCACCACCCTAGCGCCTCGCCTCCATCTCCACACCAAGGATACGCACACCCATTCGT
CCCACGC----------------AAGGCGCGATGGAGCGGCGGCCAGAGCTGCGGCGGTCGATGACGCTCTCGGAGCAGC
TGTCCAGGCCCGACCCGGCCATCCGCGAGTTCCTCAAGATCCCCGACGACAACAGCCACCTGAGCGCTGACGCTGGAGGA
GGTGGAGGCAGCGGCGGCACGATCAACTGGAAGCCGCTGCGCGACCGTCTCCGGCTCCGGCGCTCCGTGAACGCCTGGTC
CAGCCCGTCGGAGAGGCCCAGCACGGCGGACGGCGCCGGTAGCCTGAAGAACAGCGGCAGCGGCAGCAACCGCAGCCACA
AGTACATCTACGCGCAAGGTGAGGCCACGGCGGCCTTCTGCCGCACCTCCTCGCTCCGCCAGACTCCCGCATTCTCGCGC
GCGGCCTCCACTCGTGTGGGTTCCAACGCCACGATCGGGCGCTCTCCCCCCGTGGTCGGCGACGAGGGCTCCGAGGACGA
GTCAGATCAGGACGAGGACGAGGAGGAAGGCAAGGAGGAGGAGGAGGCGCCGACGGCGCAGATGTCCCTGATGGCGCTGC
TGGAGCAGACGGACAGCTGGGAC------GAGGAGGAGGAGGAGGAGCAGGCCGCGGCAGGCGCCGGGGCCAGCAGCAAG
AACGCGCACGCCGAGGAGGAGGAGGAGGACGGCGAGGGGCGCGAGGAG---------GAGATGGTGCACGTGTGCTGCGT
GTGCATGGTGCGGCACAAGGGCGCGGCCTTCATCCCGTGCGGCCACACATTCTGCCGCCTGTGCTCCCGCGAGCTCTGGG
TCAGCCGCGGCAACTGCCCGCTCTGCAACGGCTTCATCCAGGAGATCCTCGACATCTTCTGATCAAACCAACCTCATCTT
CCTATCTGTCCGTCCGACTCTTGATTCTTCGGAG-------------------------------------------GTT
GATGGCGAGTGAACGGCCAACGCGCCACCCTGCTCTGAAACTGAGACCCGTGTCATATCGTAGGTAAATTGGTACATCAA
TCAACATGATGACGCTCTGTCTGCGATTTATTTCTGGAATATGATTAACTGTATCAAGTGTACTTAGTAATGTTTTGGAA
TAAGAATGGGAT-GCCTACAATGA--------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------SS-------------------------------------
------------------SSSSSSSSSSSSSSSSS----------------------------S----------------
SSSS--------------S------S--------------------S-----S---------------S--S--------
---------------------------------------------------------------S---------SSSSS--
-------------------S------------------------------S-----------------------------
-------SSSSSSSSSSSSSSSSS--------------------------------------------------------
-------S------S-----------------------------------------S-----S----------S------
S-------------------------------------------------S-----------------------------
------------------S----S--------S-S---------------------------------SS----------
--------S-------------------S---------------------------------SS----------------
-----------------S-S------------------------------------------------------------
--------------------------------------------------S-S---------------------------
------------------------------------S-------------------------------------------
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-----------------------S--------------------------------------------------------
---------S--S-------------------------------------------------------------------
-----------------------SSSSSS---------------S------------------S----------------
------------------------------------------------SSSSSSSSS-----------------------
---------------------------------------------------------------------S----------
---------------------------------------------------------------------------S----
---S------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
------------S----------------------------S---S-----S----------------------------
-------------S--------------------------------------------------S---------------
-----S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_64
--------------------------------------------CTCCATGCTCCCATCCGTAC----------------
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>reverse_1962
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-----------------------------------------GCGGGATCATTCATTCACGC-------------------
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