>input_sequence_67868
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----------------------------ATGGAGGCAGACGCGAGCCATGCACCCACCACCTCTTCCTCCTCCGTCTCGT
CGTCGACATTGTCCACCTCCTCCTCCTCCTCCTCCCTCGCCACCAGCGTGCTAGAGCTCCCCAAGAACCCCAAGCCCAAG
CACCCGAAGAAGCGCAAGAGAGCCGCCGCCGACCAAGAACCGGACGCCGCCGCGGCCACCAATGGCGCCCGAGGAGACGA
GAGCAGCTGCTGCAGCACCGACGAAGACCA---CGCCGCGAGCGTCAAGGCAGCCGTGTCCAAGAGCGGCTTCAAGCACC
CGTCGTACCGCGGCGTGCGGCGCCGGAGCTGGGGCAAGTGGGTGTCCGAGATCCGCGAGCCGCGCAAGAAGTCGCGCATC
TGGCTCGGCACCTTCCCCACCGCGGAGATGGCGGCGCGCGCCCACGACGTGGCCGCGCTCGCCATCAAAGGCCGCTCCGC
GCACCTCAACTTCCCGGAGCTCGCCCACGAGCTGCCCCGCCCGGACTCCACGTCGCCCGCGGACATCCAGGCCGCCGCCG
CGAAGGCCGCCGCCACCGCCGCCGTGCAGTGCGAGGCCG------AGGCCGAGCACGAGCCCGAGACGC---------CG
TCGTCCTCCGGCGCCGTCTCGGAGTCACCGGAGCCTGCCGCCTGCGCCGAAGCGGTGCCCGCGGACAGCGGCGAGGTCGA
CAATGCGCTGTTCGACCTGCCCGACCTTCTTCTGGACCTGAGGGACGGGCTCTTCTGGTCGCCGGTCTGGCCGGCGGCGC
TGGCCGCCGAGGAGTACGACGGCGGCTGCTGCGTCGGGCTCAGCGAGCCACTCTTGTGGGCCGAGTAG------------
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>chr2D_1_TraesCS2D01G412400
CACATGCGGTGTATCATTTGTTACCACCATATTTCATGAGAGTGACCTTTGCAGGAGGGGTATCTGGTTTTCTAGTGATT
TTCGGGTTTCTCGATATGATGATCTGGGTGGGTGTTTTTTTTTGCTTCTGTAACCTCTATTTTGTAAGGACTATATTGAT
TAGAGACCTTTATAGGAA-----ACCATGGTAGAGTTTTGCTCAATAGGATTTTCATAAAAGATCTCAATTAGTTTCCGA
GTCTAGATCC-----CCTCAACCCTA-----CCGGGATATCACCTTCATGCTATCACTATCCAATCAAGTTCAAGGGGGC
TCCGATGAACCCCAATACTACCCAATCTG-ACGATGATGCCCGGGAGGAGGAGAACAAGCTTGCCGTAGCAGATTCTACA
AGCAAATAGTGTCATAATAAATCCGAATCAGACGTGTTACCTAACTGGCATTGGTTCACATGCTGTTTCAATGG------
----------------------TTAGAAATTTCATTCTGCTTAG--TAAAC--CAGTTGATTGTAGCATGATTTAAATAC
AGTTCAGTGACCTCTGATTTTAATTGACCAATTGACTGCACCCAGCACATGAATAAAGTTCAGTGGCCTCTGATTTTAAT
TGACCAATTGACTGCATCCAGCACATGAATAAAACTTTTCCTACTTGCAT------GCATATA---------TACTTCTC
TTTGCAAAAACATTA-----TGAGATTGCTTTATTTTGTGTAAATAAACATTAATTAAAAGGCGAAACATTTGCTCCTAC
CAATTCTTCTTTCCTCAATCCTCACTTCACCTTGTTTGTTTAATAAATAAATAAAATCGTGAATAGTATCCTCAAAAAAT
CGTGAATAGTACTAGCACGTTGAAAAAGAAAGGAAAACAAACGAAACGCTCTACTCAATGGCCCCAGCCAGAGGCCAAAG
AAGAAGCCACCCCTATATATACGGCCGAAGGCACTCTCTACTCCCCCAAGTCCCCACGCTTCTTCTAGTCCACCTAGCTA
CAGGCCTTCAGATCCCTGCTGCCGAGCCATGGAGGCAGACGCGAGCCATGCACCCACCACCTCTTCCTCCTCCGTCTCGT
CGTCGACATTGTCCACCTCCTCCTCCTCCTCCTCCCTCGCCACCAGCGTGCTAGAGCTCCCCAAGAACCCCAAGCCCAAG
CACCCGAAGAAGCGCAAGAGAGCCGCCGCCGACCAAGAACCGGACGCCGCCGCGGCCACCAATGGCGCCCGAGGAGACGA
GAGCAGCTGCTGCAGCACCGACGAAGACCA---CGCCGCGAGCGTCAAGGCAGCCGTGTCCAAGAGCGGCTTCAAGCACC
CGTCGTACCGCGGCGTGCGGCGCCGGAGCTGGGGCAAGTGGGTGTCCGAGATCCGCGAGCCGCGCAAGAAGTCGCGCATC
TGGCTCGGCACCTTCCCCACCGCGGAGATGGCGGCGCGCGCCCACGACGTGGCCGCGCTCGCCATCAAAGGCCGCTCCGC
GCACCTCAACTTCCCGGAGCTCGCCCACGAGCTGCCCCGCCCGGACTCCACGTCGCCCGCGGACATCCAGGCCGCCGCCG
CGAAGGCCGCCGCCACCGCCGCCGTGCAGTGCGAGGCCG------AGGCCGAGCACGAGCCCGAGACGC---------CG
TCGTCCTCCGGCGCCGTCTCGGAGTCACCGGAGCCTGCCGCCTGCGCCGAAGCGGTGCCCGCGGACAGCGGCGAGGTCGA
CAATGCGCTGTTCGACCTGCCCGACCTTCTTCTGGACCTGAGGGACGGGCTCTTCTGGTCGCCGGTCTGGCCGGCGGCGC
TGGCCGCCGAGGAGTACGACGGCGGCTGCTGCGTCGGGCTCAGCGAGCCACTCTTGTGGGCCGAGTAGGAGTGTTTTTTT
TACTGTAC-----------CTCATGAATTGCTTAGCAAGGATA-------------------------------------
----------AAAAGATTTAGTGGTAGCGGTAGCACTGCTATTGGAAAAAAGTTATCGTCAGCTGTTTGTGAGTCTTCTT
CACTCGTCCATGAAACATGTGTGC-TTTTTTTTATTGCTATCAACAAAAGAAGCTTTGCCAGACACGATGGACTTCCCTG
GAAAAGAAGACGCAGGTTTACTCTACAAGTTTGCAATTGCTTTAGATGATTGCTCAGTTGATGGACACTCCTGCATCTA-
---CATGGTGGGCCGCCGTTTACTGGTAGCTGTTAGAAGTTAATGAGCTCGATGCGTTTGCAATTATTTTTCTTATTTTG
ATGGTGATATTCATATGCTGTTGCCT-GGTGAGTTGCCGGCCGGTTGGAAGTCGTTTTATGGCCGGTGAAACAGCTA---
------CAAGCAAGAAAATCAAACCAGAGCGAACTGTGGACTGTTTCCTTGCTGGTTTCACAAACGAGTTTGGCAGTGAG
GAATGGAGTCTTGTGT---TAGCGTGTTATACTGCCTCACTCTAACAGCAGAGGTGCACTTTTAACGAACAAACAACCTA
ATTTCCACAGAGCTCTGACTTC----------------------------------------ACTCTTGCTGCTCTTACG
TCGCCATTATGAGAGGATCTCTAGAATTACGGAGGGGGGAAATCTTACACAC------TACTC----CAATGCCAACATG
GCCTTT-TAATTACCTGCGGCTTATTTAACTGCTCCGTAGGTGAAGTACTGAGCTGTAGAAGGTCATATCTTTGCTGGGT
TTGGTACAAGACCCACGTTATCCTAGGTTACAATAAAGGGAGCCCAGTCCAGAGGCGGAAAGA---------------GG
AGAAAAAACAAAGGAGATGGAAGGATCAAAGAAAGTTCCAACCCTGAGCGCACATCATTCCCTTGTCTCCTAGCAGCGGA
GGTTAG------------TTAAAAACGCAAAGCCAATGACAACCAGGTTAGGAGTTAGGTACACAGCACAGGCACGCCAG
TTACCGGCTCCCACATGATACG
>chr2A_118
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-------------------------------------TTTTTTGCTTCTTGAACCTCTATTTTGTAAGGATTATATTGAT
TAGAGACGTTTACAGAAA-----ATCATGGTAGAGTTTTGTTCATTAGGATTTCCATAAAAGATCTCAATTAGCTTCCGA
GTCTAGATCC-----CCTCAACCCTACCCTACCGGGATATCACCTTCATGCTATCACCATCCAATCAAGTTTAAGGGGGC
TCCGATGAACCCCAATACTAGCCAATCTG-ACGATGATGCCGGGGAGGAGGAGAACAAGCTCGCCGTAGCAGAATCTACA
AGCAAATAGTGCCACAATAAATCCGAATCAGACGTGTTACCTAACTGGCATTGGTTCACATGCCGTTTCAATGGTTAGTA
AAAAAGTAAAATTGCGAGGGGGTTAGTAATTCCACTCTGTTGAAATATAAACGCAGTTGATTGTAGCATGGTTTAAATAC
AGTCCAGTGACCTCTCATTTTAATTGACCAATTGACCGCATCCTGCACATGAAA--------------------------
------------------------------AAAACTTTTCATTCTTGCAGTTGCAGGCAGATA---------TACTTCTC
TTTGCAAAAACATTACTGTATGAGATTGCTTTATTTTGTGTAAATAAAGATTATTTAAA-GGTGAAACATTTGTTCCTAC
CAATTCTTCTTTCCTCAATCCTCACTTCACTTTGTTTATTTAATTATTAAT----------------------AAAAAAT
CGTGAATAGTACTAACACGTTGAAAAAGAAAGGAAAACAAACGAAACGCTTTACTCAATGGCCCCAGCCAGAGGCGGAAG
AAGAAGCCACCCCTATATATACGGCCCAAGGCGCTCTCTACTCCCCCAAGTCCCCACGCTTCTTGTAGTCCACCTAGCTA
CAGGCCCTCAGATCCCTGCTACCGAGCCATGGAGGCAGACGCGAGCCATGCACCCACCACCTCTTCCTCCTCCGTCTCCT
CGTCGACATTGTCCACCTCCTCCTCCTCCTCCTCCCTCGCCACCAGCGCGCTAGAGCTCCCCAAGAGCCCCAAGCCCAAG
CACCCCAAGAAGCGCAAGAGAGCCGGCTCCGACCGAGAGCAGGACGCCGCCGCGAACACCAATGGTGTCCGTGGAGACGA
GAGCAGCTGCTGCAGCACCGACGAAGACTTCGCCGCCGCGAGCGTCAAGGCGGCCGTGCCCAAGAGCGGCTTCAAGCACC
CGTCGTACCGCGGGGTGCGGCGCCGGAGCTGGGGCAAGTGGGTGTCCGAGATCCGCGAGCCGCGCAAGAAGTCGCGCATC
TGGCTCGGCACCTTCCCGACCGCCGAGATGGCGGCGCGCGCCCACGACGTGGCCGCGCTCGCCATCAAGGGCCGCTCCGC
GCACCTCAACTTCCCGGAGCTCGCGCACGAGCTGCCCCGCCCGGACTCCACGTCGCCCGCGGACATCCAGGCCGCCGCCG
CGAAGGCCGCCGCCACCGCCGCCGTGCAGTGCGAGGCCG------AGCCCGAGCACGAGCACGAGCCGGAGACGCCGTCG
TCCTCCTCCGGCGCCGTCTCGGAGACACCGGAGGCCGCAGCCTGCGCCGAAGCGGCGCCCGCGGACAGCGGCGAGGTCGA
CAATGCGCTGTTCGACCTGCCCGACCTCCTTCTGGACCTGAGGGACGGGCTCTTCTGGTCGCCGGTCTGGCCGGCGGCGC
TGGCCGCCGAGGAGTACGACGGCGGCTGCTGCGTCGGGCTCAGCGAGCCTCTCCTGTGGGCCGAGTAGGAATATATTCTT
-----TTTACCGTTCTGGGCTCATGAATTGCTTTGCTAGTGTACTAGTATAGC---------------------------
----------AAAAGATTTAGTGGTAGCAGTAGCACTGCTATTGGAAAAAAGTTATCGTCAGCTGTTTGTGAGTCTTCTT
CACTCGACCATGAAACATGTGTGCCTTTTTTTTATTGCTATCAACCAAAGAAGCTTTGCCAGACACGATGGACTTCCCCG
GAAAAGAAGACGCAGGTTTACTCCACAAGTTTGCAATTGCTTTAGATGATTGCTCAGTTGATGGACACCCCTGCATCTAG
CTACACGGTGGGCCGCCGTTTACTGGTAGCTGTTAGAAGTTAATGAGTTGGACGCATTTGCAATTATTTTG-TTATTTTG
ATGGTGATATTCATATGCTGTTGCCC-GGTGAGTCGCCGGCCGGTTGCAAGTCGTTTTATGGCCGGTGAAACAGTATCAT
ATACTCCAAGCAAGAAAATCAGACCGGAGCGAACTGTGGACTGTTTCCTTACTGATTTCACAAACGAGTTTGGCAGTGAG
GAATGTACTCTTGTGTTAGTAGCGTGTTGTACTGCCTCACTCTAACAGCAGAGGTGCACTTTTAACGAACAAGCTCCCTA
ATTTCCACAGAGCTCTGACTTTAA------------------------------------TTACTCTTGCTGCTCTTACG
TCGCCGTTATGGGAGGATCTCTGGAAATACGGAGGGGTAAATCTTTCTTTTATACTAGTACTACTAACAAGGCCAAGATG
GTAGTGGTAATTACCTGCGGCTTATTTAAGTAGTCCGTAGGTGAAGTACTGAGCTGTAG----TCATATCTTTGCCGGGT
TTGGTGCAATACCCACGTTATCCTAGGTTACAATAAAGGGCGCCCAGTCCAGAGGCGGAAAGACACGAAAGCTAGCTCGG
AGAAAAAACAAGATAGATGGAAGGATCAAAGAAAGTTCCAACCCTGAGCGCACATCATTCCCTTGTCTCCTAGCAGCGGA
GGTTAGGTTAGTTAAAAATTAAAAACGCAAGGCCAATGACTACCAGGTTAGGAGTTAGGTACACAACGCAAGCACGCCAG
TTACCGGCTCCCACACGA----
>chr2B_135
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------------------------------------------------------CTCTATTTTGTAAGGACTATACTGAT
TATAGAGACTTTTAAAGGAACACATCATGGTAGAGTTTTGATTGTTAGGATTTCCGTATAAGATCTCAATTAGTTTCCGA
TCCCTAGATTCCTGGCCTCAACCCTACCCC----GGATATCACCTTCGTGCTATCATTATCCAATCAAGTTTAAGGGGGC
TCCGATGAACCCCAATACAACCCAGTCTGAACGATGATGCGGGGGAGGAGGAGAACAAGCTTGCCGGAGCAGAATCTACA
AGCAAATGGTGACACAATAAATCCGAATCAGACGTGTTACCTAACTGGCATTGGTTCACATGGTGTTTCAATGG------
----------------------TTAGTAATTCCATTCTGTTGAATATAAAC--CAGTTGATTGTAGCATGGTTTAAATAC
GGTTCAGTGACCTCCCATTTTAATTGACCAATTGACTGCATCCTGCACATGAATAAAGTTCAGTGGCCTCTGATTTTA-T
TGACCAATTGACTGCATCCAGCACATGAATAAAACTTTTCCTACTTGCAT------GCATATATACTAGTACTACTTCTC
TTTGCAAAAACAA-----TATGAGATTGCTTTATTTTGTGTAAATAAACATTAATTAAAAGGCGAAACATTTGCTCCTAC
CAATTCTTCTTTCCTCAATCCTCACTTCACCTTGTTTATTAAAATAAAAAAATT--------------------------
-GTGAATAGTACTAACACGTTGAAAAAGAAAGGAAAACAAACAAAACGCTTTACTCAATGGCCCCAGCGAGAGGCCAAAG
AAGAAGCCACCGCTATATATACGGCCGAAGGCGCTCTCTACTCCTC--AGTCCCCACGCTTCTTGTAGTCCACCTAGCTA
CAGGCCTTCAGATCCCTCCTAACGAGCCATGGAGGCAGACGCAAGCCATGCACCCACCACCTCTTCCTCCTCCGTCTCGT
CGTCGACATTGTCCACCTCCTCCTCCTCCTCCTCCCTCGCCACCAGTGTGCTAGAGCTCCCCAAGAACCCCAAGCCCAAG
CACCCGAAGAAACGCAAGAGAGCCGCCGCCGACCAAGAAACGGACGCCGCCGCGGCCACCATTGGCGCACGAGGAGACGA
GAGCAGCTGCTGCAGCACCGACGAAGACAA---CGCCGCGAGCGTCAAGGCAGCCGTGTCCAAGAGCGGCTTCAAGCACC
CGTCGTACCGCGGCGTGCGGCGCCGGAGCTGGGGTAAGTGGGTGTCCGAGATCCGTGAGCCGCGCAAGAAGTCGCGCATC
TGGCTCGGCACCTTCCCCACCGCGGAGATGGCGGCGCGAGCCCACGACGTGGCCGCGCTCGCCATCAAGGGCCGCTCCGC
GCACCTCAACTTCCCGGAGCTCGCCCACGAGCTGCCCCGCCCGGACTCCACGTCGCCCGCGGACATCCAGGCCGCCGCCG
CGAAGGCCGCCGCCACCGCCGCCGTGCAGTGCGAGGCCGAGCCGGAGCACGAGCACGAGCCCGAGACGC---------CG
TCGTCGTCCGGCGCCGTTTCGGAGACACCGGAGGCTGCAGCCTGCACCGAAGCGGTGCCCGCGGACAGCGGCGAGGTCGA
CAATGCGCTGTTCGACCTGCCCGACCTTCTTCTGGACCTGAGGGATGGGCTCTTCTGGTCGCCGGTCTGGCCGGTGGCGC
TGGCCGCCGAGGAGTACGACGGGGGCTGCTGCGTTGGGCTCAGTGAGCCTCTCTTGTGGGCCGAGTAGGAATATATTCTT
CAGTTTTTACCGTTCTGGGCTCATGAATTGCTTTGCTAGTGTACTAGTAGTATGGCAAGGTTGGCTAAAAAAAAGTAGTA
TGGCAAGGATAAAAGATTTAGTGGTAGCAGTAGCACTGCTATTGGAAAAAAGTTATCGTCAGCTGTTTGTGAGTCTTCTT
CACTCGTCCATGAAACATGTGTGC-TTTTTTTTATTGCTATCAACAAAAGAAGCTTTGCCAGGCAGGATGGACTTCCCTG
GAAAAGAAGACACAGGTTTACTCTACAAGTTTGCAAATGCTTTAGATGATTGCTCAGTTGATGGACACTCCT------A-
---CATGGTGGGCCGCCGTTTAGTGGCAGCT---AGCAGTTAATTAACTCGATGCGTT-GCAATTATGTTTTGTCAGTT-
-TGATGATATTCATATGGTGATGGCCTGGTGGGCTGCCGGCCGGATTTA--------------------------TA---
------CAAGCAAAAATAAAAAATCCAAA---------------TTCCTTCCTGATTTCACAAACGAGTTTGGCAGTAAG
GAATGGACTCTTGTGT---TAGCGTGTTATACTGCCCCACTCTC-CAGCAGAAGTGCACTTTTAACGAACAAACTCCCTA
ATTTCCATAGAGCTCTGACTTTACTCTTACTCTTGCTGCTTTTTTTTTTTTTTTGCATGGTTACTCTTGCTGCTCTTACG
TCGCTATTATGAGAGGATCTCTAGAAATACGGAGGGGAAAATCTT------ATACTAGTACTC----CAATGCCAACATG
GCCTTT-TAATTACATGCGGCTTATTCAACTGCTCCGTAGGTGAAGTACTGAGCTGTAG----TCATATCTTTGCTGGGT
TTGGTACAAGACCCACGTTATCCTAGGTTACAATAAAGGGAGCCCAGTCCAGAGGCGGAAAGA---------------GG
AGAAAAAACAAACAAGATGGAAGGGTCAAAGAAAGTTCCAACTCTGAGCGCACATCATTCCCTTGTCTCCTAGCAGCGGA
GGTCAG------------TTAAAAACGCGAAGCCAATGACTACTAGGTTAGGAGTTAGGTATACAGCACAGGCACGCCAG
TTACCGGCTCCCACATGATACG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SS-----------------------------
-------S-------S--------S---------------S---S--------S--------------------------
-----------------------------------------------------------------------S--------
-----------------------------------------S-------------------------------S------
-----------S--S-----------------------------------------------------------------
--------------------------S----S-------S-S-S--------------------------S---------
---------------S------------------------S--S----------------------------------S-
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-------------------------------------S------S------SSSSSSSSSSSSSSSSSSSSSS-------
--------------S-----------------------------------S-----------------------------
--------------------------------S-------------------------------S---------------
--------------------S-----------------------------------------------------------
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----------------------------S---------------------------------------------------
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--------------------------------------------------------------------S-----------
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-----------------------------------------------S--------------------------------
------------------------S--------S----S-----------------------------------------
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-------------------------------------------------S--------------------S-S-S--S--
S-S-S-SS-------------------------S--S--SS---------------------------------------
----------------------------S---------------------------------------------------
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-----------------------------------------------------------------------S--------
-------------------------S---------------------S--------------------------S-----
-------------------------S------------------------S---S-------------------------
-------S------------------------------------------------------------------SS----
---------------------S----------------------------------------------------------
--------------------------S----------SS--SSS--SSSSSS----------------------------
-----------------------------------------------------------SSSS-----------------
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------------SS------------------------------------------------------------------
----------------------------------------S---------------------------------------
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>forward_604
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------------------------TGACCAATTGACTGCACCCA------------------------------------
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>reverse_2426
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-------------------------AGAGCGAACTGTGGACTGTT-----------------------------------
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