>input_sequence_67860
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------ATGGAGTCATCTAAAATTGATGCCAGTGACAAGCATCTGGAGAGCTACCTGACATTGG
GTTTGACAGTATCACAGTCAAAGAAAGGAAGTACCAAGTTTCCTAAGGTCCTGTCGCTTCTTGCCACATATCTGGGCCGA
TCAGTTCAGAAGAATGAAGAATTACTGGGTTCTAATGGAATAAAGGAGTCGACCACTATTTTTCATGGCCAGAAGGTGCC
AGATCTCAGTATACAGCTCTATGCAGAACGCATT-TTCAAATATGCCGAGTGCAGTCCATCTTGCTTTGTGTTGGCACTT
GTCTACATGGAGAGATATCTACAGCAGC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CAAATGTGTACA
TGACGCTCTTCAGCGTTCATCGCTTGCTAATTACAAGTGTGGTGGTTGCTGCCAAATTCACAGATGATGCGTA------A
GTGTACCCAATGCAACTGCAATTCAGC-TGTATTTCTTTCTTTG-----TATATCACAAACATGCACAGGTTTCCCAGTA
ACTTTCT--------CAATGCATGTCGTGCAGGTTTTTCAACAATGCATTCTATGC----CAGAGTGGGAGGAATCAGCA
CAATCGAGATGAATCGGCTTGAACTGGATTTGTTGTTTAATCTGGACTTCAGGCTGAAAGTGAACCTAGGGACA--TTCG
GGAGCTACTGCTTGCAGCTGGAGAAACATGCACCGGTGTCACCAGAGAGACTGCCTGTTCAGGTTCATTGTGTCAGTGTC
AAAGGATCTAAAGATTTGGGCTATAGCAGCAGTGGTAGCGCCGACGAATTTTGCCAGAGCAAGCTTGTTCGCCAAAGCTA
CAGCAGTCAGGCTCTCCAAGGATGCAGCTGA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr1A_1_TraesCS1A01G249300
GCTTTGCTGCTGCCGTTCCATCCGAAAAGGCGAGGAGAGACGGACGGAGGAGGGGCGGCCGTGGGGAG------------
---------AGCTCGAGTTCAACCCTGAAGAAGAAGAAGGCCTCCTG------CCCTTCCCTGGAGCTCAAGCCTAGAGC
AAAGCTGTAAGTCTCTCCCTCC---------CTCCCTCCCGTGCGGGTTGTTGGCTGGTACTCCTAGATCTCAAGTTGCA
CAGC--ATAATGCTATCCTACCTACCTGCGTACTATCTCCT-TGCGGCATTTGGGTCTACTAGATGGGATTCCCACCCAA
TCTGCTGTGCCTTTCTTGTG-------CTCATCTCTTTCGAGCGAGCTAGGGTTGG--TCCCGAAGGAGCGCAGGAGGGT
CGGGGAGGCGGAAATCTGCATGCCCGCGTGGTCCGATGGGGCGGTGTGCCGGCTACTTTGGGCGGGGGCAGTGGATTTGG
GTGCGGCTGCATCAGGAAGGAGTGTTTCTTGCCACCTCTTTTATGGTTGTTTATCCCCTCCTTTTGGTTGAGGGTTTAGG
ATTTCCCTTTATAAATCAGGCGAAATAC-----------------------------TACCAGAAATAGAAGAGGAATAA
CCCTCTGGGTGGCCCAAAAGGGAGCAACACCCAGCTACTACTTTGTTTGTTGCCTATCTTCATCTTCTGA----------
---------AAGGGAAACGGGAATGAACTAGATTCATGCTGATGCTTGT-------------------------------
---------------------------TAAATTCTTGTGTGTGTGTGTGTTTTGGTGCATTCCTTGCCAAGAC--GGAAA
CTGTATTC-CGATTAGTATGCTGCGCGATGAGCGAGCTAAATTTAAAGTTCAGTGTGGAGGTACCAAACAACGG------
AATCGTGGCTCGGCTCCGCATTTTATACGCAGATCGACGCAGCTATGAGTTT--GTGCAATGCTGTTACAGCCTGGGAAA
ATACCTCCAG---------ATTGAACTAGGATCAACTTTC----------------------------------------
------TTTTGCCCAACCTTCAAAGTATCTACTATCTGCTGTGCCCATTTATTTTTCACTAACAACTGCTTTAT--CTTT
TATACAGTACTTATGTCTGCCCATGGAGTCATCTAAAATTGATGCCAGTGACAAGCATCTGGAGAGCTACCTGACATTGG
GTTTGACAGTATCACAGTCAAAGAAAGGAAGTACCAAGTTTCCTAAGGTCCTGTCGCTTCTTGCCACATATCTGGGCCGA
TCAGTTCAGAAGAATGAAGAATTACTGGGTTCTAATGGAATAAAGGAGTCGACCACTATTTTTCATGGCCAGAAGGTGCC
AGATCTCAGTATACAGCTCTATGCAGAACGCATT-TTCAAATATGCCGAGTGCAGTCCATCTTGCTTTGTGTTGGCACTT
GTCTACATGGAGAGATATCTACAGCAGC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CAAATGTGTACA
TGACGCTCTTCAGCGTTCATCGCTTGCTAATTACAAGTGTGGTGGTTGCTGCCAAATTCACAGATGATGCGTA------A
GTGTACCCAATGCAACTGCAATTCAGC-TGTATTTCTTTCTTTG-----TATATCACAAACATGCACAGGTTTCCCAGTA
ACTTTCT--------CAATGCATGTCGTGCAGGTTTTTCAACAATGCATTCTATGC----CAGAGTGGGAGGAATCAGCA
CAATCGAGATGAATCGGCTTGAACTGGATTTGTTGTTTAATCTGGACTTCAGGCTGAAAGTGAACCTAGGGACA--TTCG
GGAGCTACTGCTTGCAGCTGGAGAAACATGCACCGGTGTCACCAGAGAGACTGCCTGTTCAGGTTCATTGTGTCAGTGTC
AAAGGATCTAAAGATTTGGGCTATAGCAGCAGTGGTAGCGCCGACGAATTTTGCCAGAGCAAGCTTGTTCGCCAAAGCTA
CAGCAGTCAGGCTCTCCAAGGATGCAGCTGACCAATCTATTTATGGCCTAAAGTTTTGCAAAGCATGTGACCTGATTACT
GATAATTCTTTTAGATCTGACATTTGA-----------GCATTAAGTTGTTCTGGGGGTGTTTGATTAGTAGGGATTCAA
TTATG--------------------------------------------------------TTTTACTTCTGTAACACTG
TAATTCTTGCAACCCACTTTGTTTAAAATGTTCACAATCTAGTTGGGAAACAACCGGCCTGAACATTACTCA-GTCCTGT
GATATCCAATGCCGTGGTTTAACTGGATCTATTATTTATTTATTTTAAGAAAAGGTTTAACCTGATCTGTTGCCAAGTAA
CCTGTTGGCAA-GATGAATCTGGCTTTTCCAAGATCTGCGAATGGCC--TGCTTC--CTCTGTGCTTCTTATGATTCTGT
TTCAGTCGCATAACAGGATCTGTGATGATTTACACTGGCATTGTTGCAACAAGGAATTTATAAAACGAATTACTTTCCTG
AACACGAGACTATGACTATGAGTGACATCGCCAAAGCATGAAAACAGAGC---------AGATGCACATTCGAGTCAGAA
TATTTGAGTGATGTAGCGTA-----------------------------------ACCTGCAGCGTCAACACCCCTACGG
ACGCTACTCTAGTTTTGTTATCTGTATATAAGTAACATAAGC-AATTAGTTTTATGAGGGGGGAGAAACCATCCATACTG
GTGTTTCTCTGTCTGATATTCAGCTTTAAATTTCTGCATGTGTTATCTGGGCAGTCCTCAAACGTTATCCCTTAATTAGA
CTACCAGAGTTGATATCTGGGCAGTCGTAAAGAAAGCCACAATTCTAGTCACAAGGGGATTGTAAAATTA--TACTCCCT
CCAATCCATATTAATCGAGAGGGGAC--TGTACTACAATTTCAGTGCAAGGAAAGGAAAATTCATATTCCTACGATTTTT
CCTCCACTTCTCCTATGAATCAAAGAAGAACTTGTCACCAGAGTAGAAAGATAAGACAA---TACAAATAATGTGATAGA
ATTTGCTCAAAACAAATAACGTGATAGTAGTACACA
>chr1B_1
GCTTTGCTGCTGCTGTTCCAACCGAAAAGGCGAGGAGA----GACGGAGGAGGGGCGGCCGTCGGGAGGAGCGTGAGGCC
GCCAGCTCCAGCTCGAGCTCAACCCTGAAGAAGAAGAAGAAGAAGGCCTCCTTCCCTTCCCCCGAGCTCAAGCCTAGAGC
AAAGCTGTAAGAATCTCTATCTACCAAGCCTCTCCCTCCCGTGCGGTTTGTTGGCTAGTACTCCTAGATCTCAAGTTGCA
CAGC--ATAATGCTATCCTACCTACTACCTGCGC-AGCTAGGTGCGGCATTTGGGTCTG---GATGGGATTCCCACTCAA
TCTGCCGTGCCCTTCTTGCTCTAT-------TCTCTTTCGAGCGAGCTAGGGTTGG--TCCCGAAGGAGCGCAGGAGCGT
CGGGGAAGCACAAATCTGCTTGCCCGCGTGCTCTGATGGGGCGGTGTGCCGGCTACTTTGGG--------GTGGATTTGG
GCGCAGCTGCGTCAGGAAGGAGTGTTTCTTGCCACCTC-TTTATGGTTGTTTATCCCCTCCGTTTGGTTGAGGGTTTAGG
ATTTCCCTTTATAAATGAGGCGAAATATACCAAAAATACTTGTTTCAAAAATAATAATACCAAAAATAGAAGACGAATAA
CCCTCTGGATGCCCCAAAAGGGAGCAACACCCAGCTACTTTGTGTCT-----TGCGT----ATCTTCTGA----------
---------ATGGGAAAAGGGAAAGGATTAGATTCATGCTGATGCTTGT-------------------------------
---------------------------TAATTTCTTGTGTGTGT------TTTGGTGCATTCCTTGCCAAGAC--TGAAA
CTGTATTC-CGATCAGTATGTTGTGCAATGAGAGAGCTAAGCATGGTGGTAGTACACCACTGCCTC----ACGG------
AATCTTGGTTCGGCTCCGCATCTTGTACAAGAACAGACGCGGCTGCGAGTTTTGTGCAGCAACTCTAAGCCTG-GGAAAA
ATACCTCCAGCCTTCTTGCATTGAACTAGGATCAACTTTC----------------------------------------
------TTGTGCCAAACCTTCAAAGTATCTACTGTCTGCTCTACCCATT--TTTTTTACCAACAACTGTTCTGT--C--T
TGTACAGTACTTATGTCTGCACATGGAGTCATCTACAGCTGATGCCGGTGACAAGCATCTGGGGAGCTACCTGACATTGG
GTTTGACAGTATCGCAGTCAAAGAAAGGGGATACTAAGTTTCCAAAGGTCCTGTCGCTTCTTGCCACATATCTGGGCAGA
TCAGTTCAGAAGAATGAAGAATTACTAGGTTCTAATGGAATAAAGGAGTCGACCACCATCTTTCATGGCCAGAAGGTGCC
AGATCTCAGTATACAGCTCTATGCAGAGCGCATT-TTCAAATATGCCGAGTGCAGTCCATCCTGCTTTGTGTTGGCACTT
GTCTACATGGAGAGATATCTACAGCAGC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CAAATGTGTACA
TGACGCCCTTCAGTGTTCATCGCTTGCTGATTACAAGTGTGGTGGTTGCTGCCAAATTCACAGATGATGCGTA------A
GTGTACCCAATGCAACTGCAATTCAGC-TGTATTTTG-----TG-----TATATCACAAACATGTACAGGTTTCCCAGAA
ACTTTCTCAAAATCTCAATGCATCTCCTGCAGGTTTTTCAACAATGCATTCTATGC----TAGGGTGGGAGGAATCAGCA
CAATTGAGATGAATCGTCTCGAGCTGGATTTGTTGTTTAATCTGGACTTCAGGCTTAAAGTGAACCTAGAGACA--TTCG
GGAGCTACTGCTTGCAGCTGGAGAAACATGCACCTGTGTCACCAGAGAGACTGCCGGTTCAGGTTCATTGTGTCAGTGTC
AAAGGATCTAAAGATTTGAGCTATAGCAGCAGTGCTAGCGCCGACGAGTTTTGCCAGAGCAAGCTTGTTCGCCAAAGCTA
CAGCAGTCAGGCTCTCCAAGGATGCAGCTGACCAATCTATTTATGGCCTAAAGTTTTGCAAAGCACGTGACCTGATTACT
GATAATTCTTTTAGATCTGACATTTGTGGATTCAGATTGCATTAAGTTGTTCTGGGGGTGTTTGATTAGTAGGGCTTTGA
TTCTACTCCCTCTGTAAAGTAGATGATCTAAACGATCTTATATTTCTTTACAGAGGGAGTATTTTACTTCTGTAACACTG
TAATTCTTGCAAACCACTTTGTTTAAAATGTTCACAATCGAGTTGGGAAACAACAGGTCTGAACATTGTTCATGTCCTGT
GATATCCAATGCCGC--------------------------------------GGTTTAACCGGTTCTGTTGCCAAGTAG
CCTGTCGGCAAAGATGAATCAAGGTTTTCCAAGATCTGTGAATGGAC--TGTTCATTCTCCATGCATCTTCTGATTCTGT
TTGAGTCGCATAACAGGATCTGTGATGATTCCCACCGGCATTGTTGCAACAAGGAATTTATAAAACGAATTACTTTCCTG
AACACAAGACCATGACTACGAGAGACATTGCCAAAGCATGAAAACAGAGCCAACGCCTCAGATGCACATTCGACTCAGAA
TATTTGAGTGGTGCAGCATATAATTCGAAACAGATGCTATGAAAAGGCTGGACCCACCTGCAGCTTCAACACCCCC----
ACGCTACTCTAGTTTTGTTATCTGTA----AGTAACATGAGCAAATTAGTTTTATGAGGGGA-AGAGACCATCCAGACTG
GTATTTTTCTGTCTGATACTCAGCTTTAAATTTCTGTACGTGTTCTCTGGGCAGTCCTCAAACGTTATCCCTTAATTAGA
CTAGTAGAGTAGATATCTGGGCAGTCGTAAAGAAATCCACAATTCTAGTCATGAGCGGATTGTAAAATTAACTACTCCCT
CCGATCCATATTAATCGAGAGAGGGGATTGTACTACAATTTAGGTGCAAGGAAAGGAGAATTCATATTCCTATG-TTTTT
CCTCCACTTGTCCTATGAATCAAAGAACAACTTGTCACCAGAATACAAAGATAAAACAATACTACAAATAATGTGATAG-
------------------------------------
>chr1D_1
GCTTTGCTGCTGCTGCTCCAACCGAAAAGGCGAGGGGA----GACGGAGGAGGGGCGGCCGTGGGGAGGAGCGTGAGGCC
GCGAGCTCCAGCTCCAGCTCAACCCTGAAGAAGAAGGCCTCTC----------CCCTTCCCCCGAGCTCAAGCCCAGAGC
AAAGCTGTAAGGATCTCTATCTACCAAGCCTCTCCCTCCCGTGCGGGTTGTTAGCTGG------TAGATCTCAAGTTGCA
CAACATATAATGCTATCCTACCTACCTTTGTAAGTAGCTAGGTGCGGCATTTGGGTCTAG-AGATGGGATTCCGGCCCAA
TCTGCCGCGCTCTTCTTGCTCTGATCTCTCATCTCTTTCGAGCGAGCTAGGGTTGTGATCCCGAAGGAGCGCAGGAGGGT
CGGGGAAGCAGAAATCTGCTTGCCCGCGTGGTCTGATGGGGTCGTGTGCCGGGTACTTCGGA--------ATGGATTTGG
GGGCAGCTGCATCAGGAAGGAGTGTTTCTTGCCACCTC-TTCATGGTTGTTTA-CCCCTCCTTTTGGTTGAGGGTTTAGG
ATTTCCCTTTACAAATGAGGCGAAATATTACCT------------------------TACCAAAAATAGAAGAGGAATAA
CCCTGTGGGTGGCCCAAAAGGGAGCAACACCCAGCTCCCTACTTTGTACTACTGCTT----ATCTTCTGAAGCAGCTTGA
TGGTCGCAGAAAAGGAAAAGGAAATAAGCAGATCCATGTTGATGTCTGTGGGTAGTACTCTACAACTTTGTACTAAATCA
GCGACGAGTAATATGGAGCGGAAGGAGTATATTCTTGCGTGTATTTGACACACTCCTTAGAGAATGCCAAGACTTGGAAA
CTGTATTTTCGATTGCTATGTTGTGCAATGAGAGGGGTCAATTCAGAGCAACGTGTGGAGGTAGCTTCTAAATTTAGTAT
ATTCTTGGTTTGGCTCCGCACCTT--ACGAGAATAGACGCAGCTATGGGTTTTGGTGCAATGCTATAATCCTG-GGGAAA
TTAGCTTCAGCCTTCCTCTTCATCGTCTGATGTCCATCTTTAAATTTCTGCGTGGTTGACTGGTTGTACATAAACTGTCA
TCAACTTTTTTCCACACCTTCAGCTTGTCTACTGTTTTCTCTACAGAAAATCTTGTTGATTAATAACTTGCTTCACC--T
TTTACAGCACTTATGTCTGCCTATGGAGTCATCTACAACTGATGCCGGTGATAAGCATTTGGAGAGCTACCTGACATTGG
GTTTGACAGTATCGCAGTCAAAGAAAGGGAATACCAAGTTTCCAAAGGTCCTGTCGCTTCTTGCCACATATCTGGGCAGA
TCAGTTCAGAAGAATGAAGAATTACTAGGTTCAAATGGAATAAAGGAGGCAGCCACCATCTTTCATGGCCAGAAGGTGCC
AGATCTCAGTATACAGCTCTATGCAGAACGCATC-TTCAAGTATGCTGAGTGCAGTCCATCCTGCTTTGTGTTGGCACTT
GTCTACATGGAGAGATATCTACAGCAGC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CAAATGTGTACA
TGACGCCCTTCAGCGTTCATCGCTTGCTGATTACAAGTGTGGTGGTTGCTGCCAAATTCACAGATGACGCGTA------A
G--TACCCACTGCACGTGGAATTCAGC-TGTATTTTG-----TG-----TATATCGCAAACATGTACAGGTTTCCCAGTA
ACTTTCTCA-A-------TGCATGTCGTGCAGGTTTTTCAACAATGCATTCTACGC----TAGAGTGGGAGGAATCCGCA
CAATCGAGATGAATCGGCTTGAACTGGATTTGTTATTTAATCTGGACTTCAGGCTGAAAGTGAACCTAGAGACG--TTTG
GGAGCTACTGCTTGCAACTGGAGAAACATGCACCGGTGTCACCAGAGAGACTGCCGGTTCAGGTTCATCGTGTCA-----
-ATGGATCTAAAGATTTGAGCTATAGCAACAGC---AGCGCCGACGAGTTTTGCCAGAGCAAGCTTGT------AAGCTA
CAGCAGCCAGGCTCTCCAAGGATGCAGCTGACCAATCTATTTATGGCCTAAAGTTTTGCAAAGCATGTGACCTGATTACT
GATAATTCTTTTAGATCTGACATTTGTGCATTCAGATTGCATTAAGTTGTTCTGAGGGTGTTTGATTAGTAGGGATTCGA
TTCTG--------------------------------------------------------CTTTACTTGTGTAACACTG
TAATTCTTGCAAACCACTTTGTTTAAAATGTTCACAATCTAGTTGGGAAACACCAGGTCTGAATATTATTCA-GTCCTGT
GAT-TCCAATGCCGC--------------------------------------GGTTTTACCGGATCTGCTGCCAAGTAA
CCTGTCGGC-AAGATGAATCTGGCTTTTCCAAGATCTGTGAATGGCCTGTGTTCGTTCTCTGTGCATCTTCTGATTCAG-
TTGAGTCGCATAACAGGATGTGTGATGATTTTCACCGGCATTGTTGCGACGAGGAATTTATAAAACGAATTACTTTCCTG
AACACGAGACTATAACCACGAGGGACATCGCCGAAGCATGAAAACAGAACCAACACCTCGGATGCAAATTCAAGTCAGAA
TATTTGAGTGATGTAGCATATCATTCGAAACAGATGCTATGAAATGACTGGAACCACCAGCAGCTTCAACACCCCC----
ACGCTACTCTAGTTTTGTTATCTGTA----AGTAACATAAGC-AATTAGTTTTATGAGGGGG-AGAAACCATCCATACTG
GTGTTTTTCTG--------TCAGCTTTAAATTTCTTTATGTGTTATCTGGGCAGTCCTCAAACGTTATCCCTTAATTAGA
CTACCAGAGTTGATATCTGGGCAGTCGCAAAGAAAGCCACAATTCTAGTCACGAGGGGATTGTAAAATTAACTACTCCCT
CCGATCCATATTAATCGAGAGGGGAT--TGTAC----------GTGCAAGGAAAGGAAAATTCATATTCCTATGC-TTCT
CCTCCACTTTTCCTATGGATCAAAGAACAACTTGTCACCAGAGTACAAAGATAAAACAA---TACAAATAATGTGATAG-
------------------------------------
>chr1A_1007
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TCATCTACAACTAATGCTGGTGATGAGCATTTGGAGAGCTACCGGACATTGG
GTTTGACAGTATCGCGGTCAAAGAAAGGGGATACGAAGTTTCCAAAGGTCTTGTCGCTTCTTGCCACATATCTGGGCAGA
TCAGTTCAGAAGAGTGAAGAATTACTAGGTTCTGATGGAATAAAGGAGTCGTCCACTATCTTTCATGGCCAGAGGGTGCC
AGATCCCAGTATACAGCTCTATGCAGAACGCATTTTTCAAGTATGCTGAGTGCAGTCCATCCTGCTTTGTGTTGGCACTT
GTCTACATGGTGAGACATCTACATCAGC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CAAATGTGTACA
TGACGCCCTTCAGTGTTCATCGCTTACTAATTACAAGTGTGGTGGTTGATGCCAAATTCACAGATGATGCGTAGTGTGTA
GTGTACCCAATGCAGCCGCAATTCCGT-TGTATTT----CTTTGCATATCATATCACAAACATGCACAGGTTTCCCAGTA
ACTTTCTCA-AATCTCAATGCATCTCCTGCAGGTTTTTCAACAACGCATTATATGC----TAGGGTGGGAGGAATCAACA
CAATCGAGATGAATCGTCTCGAGCTGGATTTGTTGTTTAATCTGGACTTCGGGTTGAAAGTGAACCTAGAGACT--TTTG
GGAGCTACTACTTGCAACTGGAGAAACATGCACCGGTGTCACCAGAGAGACTGCCGGTT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr3A_1007
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TCATCTACAATTGATGCCGGTGATAAGCATTTGGAGAGCTACTGGACATTGG
GTTTAACAGTATCACAGTCAAAGAAAGGGGATACCAAGTTTCCAAATGTCCTGTCGCTTCTTGCCACATATCTGAGCAGA
TCAGTTCAGAAGAATGAAGAATTACTAGGTTCTGATGGAATGAAGGAGTCGTCCACTATCTTTCATGGCCAGAGGGTGAC
AGATCTCAGTATACAGCTCTATGCAGAACGCATT-TTCAAGTATGCTGAGTGCAGTCACTAGTAGAAAACGGGCCTATTG
TCCCGGTTCGTAAGGATCTTTTGTCCTGGTTCCTGAACCGGGACTAAAGGGTCGTTACTAATGCCCTGACCCTTTAGTCC
CGGTTCTAACCAGAACCGGGACAGATGGGTCTCCACGTGGCCTGCGCGCTGAGCCCAGGCAGGAGGGCCTTTGGTCCCGG
TTGGTGGCACCAACCGGGACCAATAGGCATCCACGCGTCAGCATTTCTGTGGCTGGGGTTTTTATTTTTTTTGAAAGCGG
GGGGGTTTGGGGGTTAATTTAGGTATTTCATATATTGTGTCACAAACATGACGCCCTTCAGTGTACGTCAAATGTGTACA
TGACGCCCTTCAGTGTTCATCGCTTGCTAATTACAAGTGTGGCGGTTGCTGCCAAATTCACAGATGATGCGTA------A
GTGTACTCAATGCAGCCGCAATTCAGC-TGTATTT----CTTTG-----CATATCACAAACATGCACTGGTTTCCCACTA
ACTTTCTCA-AATCTCAATGCATCTCCTGCAGGTTTTTCAACAATACATTCTATGC----TAGGGTGGGAGGAATCAACA
CAATCGAGATGAATCGTCTCGAGCTGCATTTGTTGTTTAATCTGGACTTCAGGCTGAAAGTGAACCTAGAGACTTTTTTG
GGAGCTACTGCTTGCAACTGGAGAAACATGCACCGGTGTCACCAGAGAGACTGTCGGTTCAGGTTCATTGTGTCA-----
-AATGATCTAAAGATTTGAGCTATAGC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>chr1D_1224
TCAGGT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------ATACAGCTCTATGCAGAACGCATT-TTCAAGTACGCCGAGTGCGGGCCATCTTGCTTTGTGTTGGCACTT
GTCTACATGGAGAGATAGCTA--GCAAG----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CAAATGTGCACA
TGATGCTCTTTAGTGTTCATCGCTTGCTAATTACAGGTGTGGTG-TTGCTGCCAAATTCATTGATGATGCGTA------A
G--TACCCACTGCCACAGCAACTGCAATTGTATTATC-----TT-----TATATCACAAACATGCACAGGTTTCCCAGTA
ATA-----------------CATGTGTTGCAGGTTTTTCAACAGTGCATTCTAACATGCATAGGGTGGGAGGAATCAGTG
CATGCGAGATGAATCGGCCTGAGTTGGATTTGCTGTTTAATCTGGACTTCAGGCTGAAAGTGAACCTGGAGTCA--TTTG
GGAGCTGCTGCTTGCAGCTGGAGAAACATGCAGCGCGTTCACC--AGAGACTGCCGGTTCAGGTTCATTGTGTCA-----
-ATGGATGAAAAGATTTGAGCTATAGC------GGTAGCGCCCATGAGTTTTGCTAGAGCAAGCTATGT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>SNPs
-------------S------S-----------------SSSS--------------------------------------
-----------------S---------------------S-SSSSSS--------------SS-----------------
-----------SS----SS--S----------------------------------------------------------
---------------------------S----SSSSSSSSS------------------SS-------------------
-----S-----S------SS------------------------------------------------------------
------S--S---------S-------------S----------------------------SSSSSSSS----------
-S--S---------------------------------S-----------------------------------------
----------------S----------S----------------------------------S-----------------
---------------------------------------SSS--SS-SS-SSSSSS-SSSS-------------------
-----------------S-----S---S----------------------------------------------------
--------------------------------------------S--SSS------------------------------
--------------------S--S--S-----S------------S--S-SS-------------SSSS-----------
----S---S------------S--S----SSS--S-----------------------------S-S-SSSSSS------
--------------------------------------------------------------------------------
-------------S-------------------S------S-S------SS-----S-----------S-S-S----SS-
-S---------------------------------S----------S---------------------------------
----------------------------S-S------------S---------------------------------S--
--------------------------S--------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------SSSS-----------------------------------------
------------------------------------------------------------S-------------------
---------------------------------------------------------------------S----------
-------------------------------------------------------S------------------------
------------------S----------------------------S--------------------------------
--------------------------------------------------------------------------------
--------------------------S---------------------------------------------------S-
--S-----------------------------------------------------------------------------
------------S-----------------------------------------S--S----------S-----------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-----------------
-----S--------------------------------S------------S-SS----------S----S---------
--S----------------------------S---S--------------------------------------------
------------------S---S---------------------------------------------------------
-----------------S----------------------------------------------S----------SSSSS
--------------------------SSSS--------------------------------S-----------------
------S-----------S-----------------S-------------------------------------------
----------------------------------------------------S---------------------------
--S----------------------S---------------SS-----------------------------S-S-----
---------S-----------------S-----------------S--------S------------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_301
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TTGCGGCATTTGGGTCTACT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_2150
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GGACATTCGGG
AGCTACTGC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>forward_990
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------CGGCTCCGCATTTTATACGC--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>reverse_2978
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GTAACCTGCAGCGTCAACAC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
