>input_sequence_67848
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--ATGTCATCAAGGTCAG----ATTATATCAACCTGTCTTCTTT----GTTGATGGAACGATGGCTGCGGATCGATCACT
CGA----T---AGTTGATGCACAGAGGCTCCTGCCATCCGAGTTTGGCTCTAACATAGAGCGGGTTCACACCGTGGATCC
AGCGGCCACATTGTATGCTGGTAAAGTCGGCCTTCGCCGTCTGATCGAGGCGGAGGGTATACATCATATATATGTCTGCT
GCAACGGGTTCGCCGAAACCTGCCTTCTGAGCATCGGCGATGTTACAGCCGTTGGCGCCAGTCCTCCGTCCGACAAGATC
ACTGTCCTAGTCGATGGAGATGCAAAGGGTA---AAGCACACATCGTGTTG------CTGCCACTGTGAGTAAGTTCGCA
AAGC-GTTACATCC----------------------------------------------------------------TG
CGCTGATCTGTAATCTGT----ATTGATGCACACAGCGGTGTTTGTGGTGGAAGAAGACATAGCCGCCTACACGGTGAGG
GCGGTCGACGACCCGAGAACCCTGGACAAGATCCTCTACATGAGGCTGCTGGCGAACATGGTGTCCCACAACGAGCTCAT
CGCCATGTGGGAGAGGAAGACGGGCAGGACTTTC---CAGATCGAGCGTGTCCCGGAGGCGGATCTCCTCAAGTTGATCA
ATGGTAGG-AGGGTACATGCATCATCGTG---------CACCT-CCCGGGCACACATATGGTGGTCTTGTGTACATGGAG
CCACAGCTGCACCTCTGACCTCTCTTGACATGTACTCAT----G------CATGCAGAAGCGGCGTTCCCTCTGAACATA
CTGCTGTCCCTCTCGCTCTCCGTCTTGGTGAGGGGCGA----CGTACCAAGCCAACCTCGACATTGA-------------
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>chr7D_1_TraesCS7D01G074900
ACCACTGCACCGGGACGAAAGCTGCTATTGTTTTTATTTTGGCTGTGGCGTTCTGACCAATCTGGTAGACGAAAACAGTT
CTGTTTTGTGACACCCGATACTTATGCCATGTTATTGTTGCAATGAATATTTTTTATTGTCCCTAGATGCCTCAGTTTCA
TATCATGCTTA-CTCTACTGTCAATGGC--TACTAACTTATATCCGTGTTTATGAGAGGTGAAGTGAAATATACTATTGC
TGGTC---------CTACTATAGGCAAGACTTCTTATCTTGAAATTAGCATTTGAAATTATACTATTGATGTATATTGAT
ACAAGTAGTGATA-TTTAACTGAGGTGCTTAATGCTTCATTATCGTCCTGCTACCTGTCTGTACACATGCCCTCTAATCA
AGTGTGTCATTTTGCGAACCAGCTGTATG--AAATCATGTATCACAAATGATAATAGTTTCCCAAGTTAAATGGAATTTA
CAATTTTATCATCC------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TCTACTGTTA----ATTGCTTATGGGTATATAGGGTCTTTGTAGTGAAATC
AATCTATTTATTGGAGACCGCTGGTCCTGTACATAAGGCTTCTTACCTTCGAATTAGCATTTGAAATTGTACCGTTGCTG
TATATTGATACAAGTGGTGATGCAAAGAAATAGTTATATGAAAGAATACATGTGACTCAAGTTCCTAATGCAGCACTGCT
GTCATTCTGCAAACCAGTTGTGTGAAAAATAGTGCATCACAAATGCTAATGGCTTCAGTAAGTTGCCGTTTAAATCATGA
GCCAGCTCTGAGCTGGAAAAAGAAAAAGAGTCTTGCAGCCGTTCATTTTTTTTTCTTTTGATAGTTTTCTGTGTGTGGAT
TCTG----ATTCTTTTTCTGTCTGATGACCAGGGAGATTTATTTGACCACAGGAGCCTC--GTGAATGCCATCAAGGGTG
CGGATGTCGTGATCTCGGCTGT-GGGG-CCCGTCAGCTCGCCGAGCAGACGAGAATTGTCATGGGAATGAAGTAGGCCGG
CAATGTCATCAAGGTCAG----ATTATATCAACCTGTCTTCTTT----GTTGATGGAACGATGGCTGCGGATCGATCACT
CGA----T---AGTTGATGCACAGAGGCTCCTGCCATCCGAGTTTGGCTCTAACATAGAGCGGGTTCACACCGTGGATCC
AGCGGCCACATTGTATGCTGGTAAAGTCGGCCTTCGCCGTCTGATCGAGGCGGAGGGTATACATCATATATATGTCTGCT
GCAACGGGTTCGCCGAAACCTGCCTTCTGAGCATCGGCGATGTTACAGCCGTTGGCGCCAGTCCTCCGTCCGACAAGATC
ACTGTCCTAGTCGATGGAGATGCAAAGGGTA---AAGCACACATCGTGTTG------CTGCCACTGTGAGTAAGTTCGCA
AAGC-GTTACATCC----------------------------------------------------------------TG
CGCTGATCTGTAATCTGT----ATTGATGCACACAGCGGTGTTTGTGGTGGAAGAAGACATAGCCGCCTACACGGTGAGG
GCGGTCGACGACCCGAGAACCCTGGACAAGATCCTCTACATGAGGCTGCTGGCGAACATGGTGTCCCACAACGAGCTCAT
CGCCATGTGGGAGAGGAAGACGGGCAGGACTTTC---CAGATCGAGCGTGTCCCGGAGGCGGATCTCCTCAAGTTGATCA
ATGGTAGG-AGGGTACATGCATCATCGTG---------CACCT-CCCGGGCACACATATGGTGGTCTTGTGTACATGGAG
CCACAGCTGCACCTCTGACCTCTCTTGACATGTACTCAT----G------CATGCAGAAGCGGCGTTCCCTCTGAACATA
CTGCTGTCCCTCTCGCTCTCCGTCTTGGTGAGGGGCGA----CGTACCAAGCCAACCTCGACATTGAGCCGTCCTTTGGC
GTCGAGGCCACCGAGCTGTACCTCGGCCGCCGTCGACAAGTACACCACCGTCGACAAGTACC-----------TCGGCCG
CCTCCTCTGACAGTTCTTTGGCCGGCTGGAATGCCTGGCAGCCCCTAACGCAGTTGCA------------------CACC
AGAAAGAAGAAGTCTCTGGCCTTGCTAAAAAGCAAATCCAGCAGTTATACCTGATTGCTTACTTTTCAGGAGAGACTGAT
CTTGGCTTGAATAAGCGGTGGGGCATTTCGTTTGGTTGATTTTCTTTTATCTTCCAAGT-------------------AC
ACCAGACTTGATCATTTTGCTTGCTTCTGATGCACCAAGAAACAATGGCTGGTGGTGTGTTGCT---ATCTTTGTGGCAC
CCGACTAACTAATTGTGAAAAGCAATTTGGAGACTGATTAAAAAGCATTCTGTGTCGGTTTTAGCCT-------------
--------------GTTTTTCTGCAAATTTACCAGGCAACTCTCACTCTCTTCTTAATCAATAAGAATTCTGTG------
---------------------------------GCAGACCGAATGAAACAGCAAAAAATTTAATAAAAACTGGGATTGTG
ATTGAACTGGCTCGCCCCACCAAAGGTATCAGGACGCTGTTGCAACATTGCTTG--------------------GCCCAA
AATCGAATCT--------TGGCACGTTGAGAAGGTGTTTAAAGATAATAAATATCCTAATTATAATTATCCAACAA-GGG
GATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTATGGGGATCGATACCCCACTTCTCCAT---------
---------------------------------------------------TTCACTTTTGCAAACTCCAAA-TCTCCCA
AACATGCACACAATCCCTCTAGACACAAAAGGAAAAATAAGAAACATGCATACATTCTGTGCTGCAAATCGTAACGGTGC
AATCTACTACT-----------------AGTTCATAGTGGAATCTCTAAG--GACTTATATTTAGGAACGGAGGGAGTAT
ATCACTAAGCTCTCTAGGGGTAAAAGGCCCCTCAATATATTGAGGTGTCCAA-CTGAAATTGGGTTACCCGATTTTGACC
AAGTCAATAATTTC
>chr7A_18
-----------------AAAACTGCTTTTGTTTTTATTTTGGCTGTGGCGCTCTGACCAATCTGGTAGACC-AAACAGTT
CTGTTTTGTGACACCCGATATTTATGCCATGTTATTGTTGCAATGAATGTTTCTTATTGTCCCTAGATGCCTCAGTTTCA
TATCATGCTTAACTCTACTGTC-AATGGCTTACTAACTTATATCTGTC-TTATGAGAGGTGAAGTGAAATGTATTTATTT
GAG-C---------CTGCTATAGTTAAGACTTCTTACCTTGAAACTAGCATTTGAAATTATACTATTGCTGTATATTGAT
ACAAGTAGTGATATTTTAACTGAGGTGCTTAATGCTGCATTATTGTCCTGCTACGTGTCTGTACAGATGCCCTCTAATCA
AGTGTGTCATTTTGCGAACCAGCTCTATGAAAAATCATGTATCACAAATGGTAATAATTTCCCAAGTTAAATGAAATTTA
CAATTTTATCATCCCCCCACTTGTGCCAAGAGGTCCTGGGTTCGAACCAGCCTCTCTGCATTGCACTTTGCAGGGGTAAG
ACTAGGTTCCTATAATCCCTCCCCAGACCCCACCTTGTGTGGGAGCTTCTATGCACTGGGTCTGTCCTTTATCATCCCCT
GAAATGCCTCAGTTCCATGCTATGCTTACTCTACTGTTA----ATTGCTTACGGGAATATAGGGTCTTTGTAGTGA----
AATCTATTTATTGGAGACTGCTGGTCCTGTACATAAGGCTTCTTACCTTGAAATTAGCATTTGAAATT------------
-------ATACAAGTGGTGATGCAAAGAATTAGTTATATGAAAGAATGCATGTAACTGAAGTTCTTAATGCAGCACTGTT
GTCATTTTGCAAACCAGTTGTGTGAAAAATAGTGCACCACAAATGCTAATTGCTTCAGCAAGTTGCCGTTTAAATCATGA
GCCAGCTCTGAGCAGGAAAAACAAAAGGAGTCTTGTAGCCGTTCAAATTTTTT-CTTTTGATAGTTTTCTGTGTGTGGAT
TCTG----ATTCTTTTTCTGTCTGATGACCAGGGAGATTTATTTGACCACAGGAGCCTTTTGTGAATGCCATCAAGGGTG
CAGATGACGTGATCTTGGCTGTGGGGC-CCCGTCAGCTTGCCGAGTAGATGAGGATTGTCATGGCAGTGAAGGAGGCCGG
CAATGTCATCAAGGTCAG----AT--AATCAACTTGTCTTCTTT----GTTGGTGGAACTACGCCTGCGGATCGATCACT
GGA----T---AGTTGATGCACAGAGGCTCCTGCCATCCGAGTTTGGCTCTGACGTAGAGCGGGTTCACACGGTGGATCC
AGCGGCCACATTGTATGCTGGTAAAGTCAGGCTCCCCCGTCTGATCGAGGCGGAGGGTATACCTCACACATATGTCTGCT
GCAACGGGTTCGCCGAAACCTACCTTCCGAGCATCGGTCATGTTACAGCC------------------------------
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-----------------------------ATGTAAT--------------CATGCAGAAGCGGCGTTCCCTCTGAACATA
CTGTTGTCC-TCTGGCTCTCCATCTTCATGAGGGGCGA----C----CAAACCAACTTCGACATCGAGCCGTCCTTTGGC
GTCGAGGCCACCGAGCTGTACC-------CCGACGTGAAGTACACCACCGTCGATGACGAGTACCTCGACCAGTCGACCG
TCTCCTCTGACAGTTCTTTGGCTCTCTGGAATGCATGGCAGCCCCTAACGCAGTTGCAGTTGTCTGGTGT-AAATTCACC
AGGAAGAACAAGTCTCTGGCCTTGCTAAAAAGCAAATCCAGCAGTTATACCTGATTGCTTACTTTTCAAGGGAGACTGAT
CTTGGCTTGAATAACCAGTGGGGCATTTCGTTTGGTTGATTTTCTTTTATCTTCCAAGT-------------------AC
ACCAGACTTGATCATTTTGCTTGCTTCTGATGAC----------------------------------------------
------------TTGTGAAAAGCAATTTGGAAACTGATTAAAAAGCATTCTGTGTCGGTTTTAGCCT-------------
--------------GTTTTTCTGCAAATTTACCAGGCAACTCTCA--CTCTTCTTAATCAATAAGAATTCTGTG------
---------------------------------GCAAAAAA------------------TTAATAAAAACTGGGATTGTG
ATTGAACTGGCTCGCCCCACCAAAGGTATCAGGACGCTGTTGCAACATTGCTTG--------------------GCACAA
AATCGATTCTTAATGGTGTGGTACGTTGAGAAGGTGTTTCATGATAATAAAT--CCTAATTACAATTAGCCAACAA-GGG
GATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTATGGGGATCGATACCCCACTTCTCCAATCCTTTTTT
TTGTTTTTCTTTGCAAATCTCTGTAAAAGAAAAACTATCTTGATTCTTCACTTCACTTTTGCAAACTCCAAAATCTCCCA
AACATGCACACAATCCCTCTAGACACAAAAGGA-AAATAAGAAACATGGGTACATTCGGTGCTGCAAACTGAAATGGTGC
AATCTACTACTCATTTTGCTCCGTATGTAGTTCATAATAGAATCTCTAAAAAGACTTATATTTAGGAATGGAGGGAGTAC
ATCACTAAGCTCTTTAGGGGTAAAGGGCCTCACAATCAATTGAGGTGTCCAAACTGAAATTGGGTCACCCGATTTTGACC
AAGTCAACAATTTC
>chr4A_18
-----------------AAAACTGCTATTGTTTTTATTTTGGCTGTGG-GCTCTGACCAATCTGGTAGACT-AAACAGTT
CTGTTTTGTGACACCTGATACTTATGCCATGTTATTGTTGCAAAGAATAATTTTTATTGTCCCTAGATGCCTCAGTTTCA
TATCATGCTTA-CTCTACTGTCAAATGGCTTACTAACTTATATCGGTG-TTATGAGAGGTGAAGTGAAATATATTTATTT
GAG-CTTGCTGGCCCTACTATAGGTGAGACTTCTTACCTTGAAATTAGCATTTGAAATTATACTATTGCTGTATATTAAT
ACAAGTAGTGATA-TTTAACTGAGGTGCTTAATGCTGCATTATTGTCCTGCTACCTGTTTGTACACATGCCCTCTAATCA
AGTGTGTCATTTTGCGAACCAGATGTATGAAAAATCATGTATCACAAATGATAATAACCTCCCAAATTAAATGAAATTTA
CAATTTTATCATCCCC----------------------------------------------------------------
-------------------------------------------------------------------------------T
GAAATGCCTCAGTTCCATGCTATGCTTACTCCACTGTTAATTAATTGCTTATGGGAATATAGGGTCTTTGTGGTGA----
AATCTATTTATTGGAGACTGCTGGTCCTGTGCATAAGGCTTCTTACCTTCAAATTAGCATTTGAAATTGTACTGTTGCTG
TATATTGATACAAGTGGTGGTGCAAAGAAATAGTTATATGAAAGAATACATGTGACTGAGGTACTTAATGCAGCACTGTT
GTCATTCTGCAAACCAGTTGTGTGAAAGATAGTGCATCACAAATGCTAATGGCTTCAGTGAGGTGCCGTTTAAATCATGA
GCCAGCTCCGAGCTGGAAAAACAAAAAGGGTCTTGTAGCCGTTCATTTTTCG---TTTTCATAGTTTTCTGTGTGTGGAT
TCTG----ATTCTTTTTCTGTCTGATGACCAGGGAGGTTTATTTGACCGCAGGAGCCTC--GTGAATGCCATCAAGGGTG
CAGATGTCGTGATCTCGGCTCT-GGGGCCCCGTCAGCTCGCCGAGCAGACGAGGATTGTCATGGCAATGAAGGAGGCCGG
CAATGGCATCAAGGTCAG----ATTGTATCAACTTGTCTTCTTT----GTTGATGGAATGACGGCTGTGGATCGACCACT
GGA----T---AGTTGATGTACAGAGGTTCCTGCCATACAA---------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TGTTGTTGCTGAG------------------
--------------------------------------------------------------------------------
-AGC-GTCACAACC----------------------------------------------------------------TG
CGTTGATCTGTAATCT----------------------------------------------------------------
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----------------------------------------------------------------------TCAGAACATA
CTGCTGTCCCTCTCGCTCTCCGTCTTTGTGAGGGGCGATGTAC----CGAGCTAACTTCGACGTCGAGCTGTCATTTGGC
GTCGAGGCCACCGAGCTGTACT-------CCGCCGTGAAGTGCACCACCGTCGACGAGTACC-----------TCGACTG
CCTCCTCTGACAGTTATTTGGCTGTCTGGAATGCATGGCAGCCCCTAACGCAGCTGCAGTTGGCTGGTGTAAAATTCACC
AGGAAGAAG----CTCTGGCTTTGCTGAAAAACAAATTCAGCAGTTATACCTGATTGCTTACTTTTCAAGGGAGACTGAT
CTTGGCTTGAATGACCAGTGGGGCATTTCATTTGGTTGGCTTTCTTTTATCTTCCAAGTTTTGACCGCAAATGTCACGAC
ACAGGACATAATCTTTTTGCTTGCTTCTGATACACTGAGAAACAATGGCTGGTGGTGTGTTGCTGTTATCTTTTTGGTAC
CCAACGAACTACTTC----AAGCAATTTGGAGACTGATTAAAAAGCATTCTGTGTCGGTTTTAGCCGGTTTTCCCGCTTT
TTTTTTGCGGCGGAGTTTTCCCGCAAATTTACCAGGTAACTCTCACTCTCTTCTTAATTAATAAGAATTCAGCCAATCAA
TAAGATTTCTGTTGCAGACCAAAAAATGAAATAGCAAAAAA------------------TGAATACAAACTGGGATTGTG
GTTGAACTGGCTCGCCCAACCAAAAGTATCAGGACGCTGCTGCAACTATCTCTTGAAACGCGCCACACATCCCAGCACCG
AAGGCATGCTTCATGCTAAGATATGTTGAGACGGTTCTCTCTAATAATAAAAGTGCTAATTACGTTGTTCCAACCATGGG
GATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTATGGGGATCGATACCCCACTTCTCCAT---------
---------------------------------------------------TTC--------------------------
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>chrUn_822
TTTTCACAGTTTTC------------------------------------------------------------------
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-----------------------------------------------------------------------TGTGTGGAT
TCTGATAT-TTTTTTTTCTGTCTGGTGAGCAGGGAGGTTTATTTGACCACGGGAGCCTC--GTAAATGCCATCAAGGGTG
CAGATGTCGTGATCTCGGCCGT-GGGGACCCCTCAGCTCGACGAGCAGACGAGGATTGTCATGGCCATCAAGGAGGCCGG
CAATGTCATCAAGGTCAGTGAGAT--TATCATTTTGTCTTCTTT----GTTGATCGAACGATGGATGCAAATCAATCGCT
GAA----T---CGTTGCTGCACAGAGGTTCCTGCCGTCTGAGTTCGGCTCTGACCCAGAGCGGGTTCACCCCGTGGATCC
AGCGACCACACTTTACGCTGGTAAAATCAGCCTTCGCCGTCTGATCGAGGCGGAGGGTATACCTCATACATATGTCTGCT
GGAACGGGTTCGCCGAAACCTACCTTGTGAGCATCGGCGATGTTACGGCTGTTGGCACTGGTCCTCCGTCTGACAAGACC
ACTGTCCTAGGCGATGGAGATGCAAATGGTATGTAAGCACGCATCATGTCCTTTTTCGTGCCACTGTA---AATCCACGC
T---------GTCC----------------------------------------------------------------TG
TGTTGATCTGTATC-------GATGGACGCACGCAGGGGTGTTTGTGGTGGAAGAGGACATAGCTGCCTATACGGTGAGA
GCAATCGACGATACGAGGACCCTGAACAAGATCATGTACATGAGGCCGCCGGTGAACATCGTGTCCCACAACGAGCTCAT
CGCACTTTGGGAGAAAAAAGCGGGAAGGACTTTC---CAGATCGCTCGCATCCCAGAGGCGGATCTCCTCAAGTTGATCA
AGGGTAGG----GTACATCCATCATTGTG---------C-----------------------------------------
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>chr3A_822
TTTTCACAGTTTTC------------------------------------------------------------------
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-----------------------------------------------------------------------TGTGTGGAT
TCTGATAT-TTTTTTTTCTGTCTGGTGAGCAGGGAGGTTTATTTGACCACGGGAGCCTC--GTAAATGCCATCAAGGGTG
CAGATGTCGTGATCTCGGCCGT-GGGGACCCCTCAGCTCGACGAGCAGACGAGGATTGTCATGGCCATCAAGGAGGCCGG
CAATGTCATCAAGGTCAGTGAGAT--TATCATTTTGACTTCTTT----GTTGATCGAACGATGGATGCAAATCAATCGCT
GAA----T---CGTTGCTGCACAGAGGTTCCTGCCGTCTGAGTTCGGCTCTGACCCAGAGCGGGTTCACCCCGTGGATCC
AGCGACCACACTTTACGCTGGTAAAATCAGCCTTCGCCGTCTGATCGAGGCGGAGGGTATACCTCATACATATGTCTGCT
GCAACGGGTTCGCCGAAACCTACCTTGTGAGCATCGGCGATGTTACGGCTGTTGGCACTGGTCCTCTGTCTGACAAGACC
ACTGTCCTAGGCGATGGAGATGCAAATGGTATGTAAGCACGCATCATGTCCTTTTTCGTGCCACTGTA---AATCCACGC
T---------GTCC----------------------------------------------------------------TG
TGTTGATCTGTATC-------GATGGACGCACGCAGGGGTGTTTGTGGTGGAAGAGGACATAGCTGCCTATACGGTGAGA
GCAATCGACGATACGAGGACCCTGAACAAGATCATGTACATGAGGCCGCCGGTGAACATCGTGTCCCACAACGAGCTCAT
CGCACTTTGGGAGAAAAAAGCGGGAAGGACTTTC---CAGATCGCTCGCATCCCAGAGGCGGATCTCCTCAAGTTGATCA
AGGGTAGG----GTACATCCATCATTGTG---------C-----------------------------------------
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>chr3A_822
TTTTCACAGTTTTC------------------------------------------------------------------
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-----------------------------------------------------------------------TGTGTGGAT
TCTGATATATTTTTTTTCTGTCTGGTGAGCAGGGAGGTTTATTTGACCACGGGAGCCTC--GTAAATGCCATCAAGGGTG
CAGATGTCGTGATCTCGGCCGT-GGGGACCCCTCAGCTCGACGAGCAGACGAGGATTGTCATGGCCATCAAGGAGGCCGG
CAATGTCATCAAGGTCAGTGAGAT--TATCATTTTGTCTTCTTT----GTTGATCGAACGATGGATGCAAATCAATCGCT
GAA----T---CGTTGCTGCACAGAGGTTCCTGTCGTCTGAGTTCGGCTCTGACCCAGAGCGGGTTCACCCCGTGGATCC
AGCGACCACACTTTACGCTGGTAAAATCAGCCTTCGCCGTCTGATCGAGGCGGAGGGTATACCTCATACATATGTCTGCT
GGAACGGGTTCGCCGAAACCTACCTTGTGAGCATCGGCGATGTTACGGCTGTTGGCACTGGTCCTCCGTCTGACAAGACC
ACTGTCCTAGGCGATGGAGATGCAAATGGTATGTAAGCACGCATCATGTCCTTTTTCGTGCCACTGTA---AATCCACGC
T---------ATCC----------------------------------------------------------------TG
TGTTGATCTGTATC-------GATGGACGCACGCAGGGGTGTTTGTGGTGGAAGAGGACATAGCTGCCTATACGGTGAGA
GCAATCGACGATACGAGGACCCTGAACAAGATCATGTACATGAGGCCGCCGGTGAACATCGTGTCCCACAACGAGCTCAT
CGCACTTTGGGAGAAAAAAGCGGGAAGGACTTTC---CAGATCGCTCGCATCCCAGAGGCGGATCTCCTCAAGTTGATCA
AGGGTAGG----GTACATCCATCATTGTG---------C-----------------------------------------
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>chr6D_830
GT-------TTTTC------------------------------------------------------------------
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-----------------------------------------------------------------------TGTGTGGAT
TCT-------TATTTATCTGCCTGACGAGCAGGGAGATTTATTCGACCACGGGAGCCTC--GTAGATGCCATAAGGGGTG
CAGACATCGTCATCTCGGCCGT-GGGGCCCCGTCAGCTCACCGAGCAGCCGAGGATTGTCATGGCAATCAAGGAGGCCGG
CAATGTG---AAGGTCAG----ATCATCACAGCTTGTGTTCTTA----CTTGATGGAACGATGGCTACAGATTCACCACT
TAGTTAGT---AGTTGCTGTACAGAGGTTCCTCCCATCCGAGTTCGGCTCTGATGTAGAGCGGGTTCACA-CGTAGATCC
AGCGGCCACATTGTACGCTAGTAAACTCAGCCTTCGCCGTCTGATTGAGGCAGAGGGTATACCTCATACATATGTCTGCT
GCAATGGGTTCGCCGAAACCTACCTTCCGAGCATCGGCGATGTTACAGCTGTTGGCGCTGACCCTCCGTCCGACAAGATC
ACTGTCCTAGGCGATGGAGATGCAAAAGGTA---A-GCATGCC---CATCCCGTTGCCTGCCACTGCA---AATTCGCAC
T---------GCTGTCGTTGATGGTGGCATCATGTGTTTGTGGTGGAAGAAGACATAGCTGCCTACATGGTGGCATCATG
TGTTTATTTTGAC----A----CTTGATGCATGTAGCGGTGTTTGTGGTGGAAGAAGACATAGCTGCCTACACGGTAAGG
GCGGTAGACGATCCGAGAACCCTG--------------------------------------------------------
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>chr6A_830
GT-------TTTTC------------------------------------------------------------------
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-----------------------------------------------------------------------TGTGTGGAT
TCT-------TTTTTATCTGCCTGATGATCAGGGAGATTTATTTGACCACGGGAGCCTC--GTAGATGCCATAAGGGGTG
CAGACATCGTCATCTCGGCCGT-GGGGCCCCGTCAGCTCGCCGAGCAGCCGAGGATTGTCATGGCAATCAAGGAGGCCGG
CAATGTG---AAGGTCAG----ATAATCACAGCTTGTGTTCTTA----CTTGATGGAACGATGGCTACAGATTGACCACT
TAGTTAGT---AGTTGCTGTACAGAGATTCCTCCCATCTGAGTTCGGCTCCGACGTAGAGCGGGTTCACACCGTTGATCC
AGCGGCCACATTGTACGCTGGTAAAGTCAGCCTTCGCCGTCTGATTGAGGCAGAGGGTATACCTCATACATATGTCTGCT
GCAATGGGTTCGCCGAAACCTACCTGCCGAGCATCGGCGATGTTACCGCTGTTGGTGCTGGCCCTCCGTCCGCCAAGATC
ATGGTCCTAGGCGATGGAGATGCAAAAGGTA---A-GCACGCC---TATCCCGTTTCATGCCACTGCA---AATTCGCAC
C---------GTCGT-----------------------------------------------------------------
TGTTGATTTTGAT----T----CTTGATGGATGTAGCGGTGTTTGTGGTGGAAGAAGACATAGCCGCCTACACGGTGAGG
GCGGTCGACGATCGGAGAACCCTGAACAAGATCCTGTATATGAGGCCGCCGGCGAACGTCATGTCCCACAAAGAGGTCAT
CTCGATGTGGGAGAGGAAAGTGGGTAGGACTTTC---CAGATCGTGCGCATCCCGGAGGCGGATCTCCTCAAGATGATCA
AGGGTA--------------------------------------------------------------------------
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>chr6D_831
-T-------TTTCC------------------------------------------------------------------
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-----------------------------------------------------------------------TGTGTGGAT
TCT-------TTTTTATCTGCCTGATGACCAGGGAGATTTATTCGACCACGGGAGCCTC--GTAAATGCCATAAAGGGTG
TAGACGTCGTCGTCTCGGCTGT-GGGGCCTCGTCAGCTCGTGGAGCAGTCGAGGATTGTCATGGCAATCAAGGAGGCCGG
CAATGTG---AAGGTCAG----CT--TGTCAGCTTGTGTTTTTA----CTTGATGGAACGATGGCTGCAGATTGACCACT
TAGTTAGT---TGTTGTTGTACAGAGGTTTTTGCCATCTGAGTTTGGCTCTGACGTAGAGCGGGTTCACACCGTAGATCC
AGCGGCCACATTGTACGCTGGTAAACTCAGCCTTCGCCGTCTGATTGAGGCAGAGGGTATACCTCATACATATGTCTGCT
GCAATGGGTTCGCCGAAACCTACCTTCCGAGCATCGGCGATGTTACAGCTGTTGGCGCTGGCCCTCCTTCCGACAAGATC
ACCGTCCTAGGCGATGGAGATGCAAAAGGTA---A-GCACGCC---CATCCCATTTCCTGCCACTGCA---AATTCGCAC
C---------GTCGTCGATTA---------------------------------------------ATGGTGGCATCATG
TGTTGATTTTGAT----T----CTTGATGCATGTAGCGGTGTTTGTGGTGGAAGAAGACATTGCCACCTACACGGTGAGG
GCGGTCGACGATCCGAGAACCCTCAACAAGATCCTGTACATGAGGCCACCGGCGAACATTGTGTCCCACAACGAGCTCAT
CTCGATGTGGGAGAGGAAAGCGGGCAGGACTTTCCAG---ATCGTGCGCATCCCGGAGGCGGGTCTCCTCAAGTTGATCA
AGGGTA---------CATCCATCATCGAT---------CCTGTGCCTAGACACGTATATGGTGTCC----GTACATGGTT
GT--AGCTGCACCTCTGACATCTCTTGACATGTAAT--------------GATGCAGAGGCGGCTTTCCCTCTGAACATA
TTGCTGTCCCTCGCCCTCTCCATCTTCATCGGGGGCGA----C----CAGGCCAACTTTGAGATTGAACCATCCTTTGGC
GTCGAGGCCACCGAGCTGTACC-------CCGACCTAAAGTACACCACTATCGACGAGTATC-----------TCGACCG
CCTTCTCTGACAGCTTTT-GGCTGGCTGGAATG-----------------------------------------------
--------------------------------------------------------------------------------
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>chr2D_873
--------------------------------------------------------------------------------
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------------------------------AGGGAGATTTATTTGACCACAACAGCCTC--GTAAACGCCATCAAGCATG
CAGATGTCGTGATCTCGGCCGT-GGGGACCCGTCAGCTCGACGAGCAGAGGAGGATTGTCATGGCCATCAAGGAGGCCGG
CAATGTCATCAAGGTCAGTGATAT--TATCATTTTGTCTTGTTT----GTTGATCGAACGATGGATGCAAATCAATTGCT
GAA----T---CGTTGCTGCACAGAGGTTCCTACCATCTGAGTTCGGCTCTGACCCAGAGCGGGTTCACACCGTGGATCC
AGCGGCCACACTGTACGCTGGTAAAGTCAGCCTTCGCCGTCTGATAGAGGCGGAGGGTATACCTCATACATATGTCTGCT
GCAACGGGTTCGCCGAAACCTACCTTCTGAGCATCGGCGATGTTACGGCTGTTGGCGCTGGTCCTCCGGCCGACAAGATC
ACTGTCCTAGGCGATGGAGATGCAAAAGGTA---A-GCACGCATCGTATCCTTTTTCCTGCCACTGTA---AATCCGCGC
T---------GTCC----------------------------------------------------------------TG
TGTTGATCT---ATCTGT----GTTGATGCACGCAGGGGTGTTTGTGGTGGAAGAGGACATAGCTGCCTACACGGTGAGA
GCGATTGACGATACGAGGACCCTGAACAAGATCCTGTACATGAGGCCGTCGGCGAACATCGTGTCCCACAACGAGCTCAT
CGCACTGTGGGAGAAGAAAGCGGGAAGGACTTTCCAGCAGATCGCTCGCATCCCAGAGGCGGATCTCCTCAAGTTGATCA
AGGGTGGGTAGGGTACATCCATCATTGTG---------CCTTGAGAATGTACGTAGCTA---------------------
CAACTGTTGCATCTCTGACCACTCTTAATTTGTTGACAT----GTGTGACCATGCAGAGGCGGCATACCCTCTCAACATG
ATGCTGTCCCACTCGCTCTCCGTCTTCGTGAGGGGCGA----C----CAAGCCAACTTCGACATCGAGCCGTCCTTTGGT
GTCGAGGCCACCGAGCTGTACC-------CTGACGTTAAGTACACCACCGTCGACGAGTACC-----------TGGACCG
CCTCCTCTGACAGTTCTT-GGCTGGATGGAGTG-----------------------------------------------
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>chr3B_873
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------------------------------AGGGAGATTTATTTGACCACGACAGCCTC--GTAAATGCCATCAAGGGTG
CAGATGTCGTGATCTCGGTTGT-GGGGACCTGTCAGCTCGACGAGCAGACGAGGATTTTCATGGCCATCAAGGAGGCCGG
CAACGTCATTAAGGTCAGTGAGAT--TATCATTTTGTCTTCTTTATTTGTTGATCGAACGATGGATGCAAATCGATCAAT
TGCTGAATCAGAGTTGCTGCACAGAGGTTCCTGCCGTCTGAGTTCGGCTCTGACCCAGAGCGGGTTCACACCGTGGATCC
AGCAGCCACACTATACGCTGGTAAAATCAGCCTTCGCCGTCTGATCGAGGAGGAGGGTATACCTCATACATATGTCTGCT
GCAACGGGTTTGCCGAAACCTACCTTGTGAGCATCGGCGATGTTACGGCTCTTGGCGTTGGTCCTCCGTCCGACAAGATC
ACTGTCCTAGGCGATGGAGATGCAAAAGGTA---A-TCACGCATCATATCCTTTTTCCTGCCACTGTA---AATCCGCGC
T---------GTCAGTTA-------------------------------------------------------CATCATG
TGTTGATCTGTAC----TATTGATGCACGCATGCAGGGGTGTTTGTGGTGGAAGAGGACATAGCTGCCTACACGGTGAGA
GCGATCGAGGATACGAGGACCCTGAACAAGATCCTGTACATGAGGCCGCCGGCGAACATCGTGTCCCACAACGAGCTCAT
CGCACTGTGGGAGAAGAAAGCAGGAAGGACTTTCC---AGATCGCACGCATCCCAGAGGCGGATCTCCTCATGTTGATCA
AGGGTAGG----GTACATCCATCCCATCATTGTGCCTCCCTTGAGAATGTACTC--------------------------
-----GTAGCATCTCTGACTGACCATTCTTTGTTGACATGCATGTGTGACTATGCAGAGGCGGCATACCCTCTCAACATG
ATGTTGTCCCACTCGCTCTCCGTCTTGGTGAGGGGCGA----C----CAGGCCAACTTCGACATCGAGCCGTCCTTTGGC
GTCGAGGCCACCGAGCTGTACC-------CTGACGTGAAGTACACCACCGTCGACGAGTACC-----------TGGACCG
CCTCCTCTGACACTTCTT-GGCTGGATGGA--------------------------------------------------
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>chr3B_873
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------------------------------AGGGAGATTTATTTGACCACGACAGCCTC--GTAAATGCCATCAAGGGTG
CAGATGTCGTGATCTCGGCCGT-GGGGACCTGTCAGCTCGACGAGCAGACGAGGATTGTCATGGCCATCAAGGAGGCTGG
CAATGTCATTAAGGTCAGTGAGAT--TATCATTTTGTCTTCTTT----GTTGATCGAAAGATGGATGCAAATCGATCAAT
TGCTGAATCAGAGTTGCTGCACAGAGGTTCCTGCCGTCTGAGTTCGGCTCTGACCCAGAGCGGGTTCACACCGTGGATCC
AGCGGCCACACTGTACGCTGGTAAAATCAGCCTTCGCCGTCTGATCGAGGCGGAGGGTATACCTCATACATATGTCTGCT
GCAACGGGTTCGCCGAAACCTACCTTCTGAGCATCGGCGATGTTACGGCTCTTGGCGCCGGTCCTCCGTCCGACAAGATC
ACTGTCCTAGGCGATGGAGATGCAAAAGGTA---A-GCACGCATCATATCGTTTTTCCTGCCACTGTAGTAAATCAGCGC
TGTCAGTTACATCC----------------------------------------------------------------TG
TGTTGATCTGTAC----T----ATTGATGCACGCAGGGGTGTTTGTGGTGGAAGAGGACATAGCTGCCTACACGGTGAGA
GCGATCGATGATACGAGGACCCTGAACAAGATCCTGTACATGAGGCCGCCGGCGAACATCGTGTCCCACACCGAGCTCAT
CGCACTGTGGGAGAAGAAAGCGGGAAGGACTTTCCAG---ATCGCTCGCATCCCAGAGCCGGATCTCCTCAAGTTGATCA
AGGGTAGG----GTACATCCATC---------------------------------------------------------
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>SNPs
SSSS-SSSSSSSSSSSS---S-----------------------------S-------------------SS--------
--------------------------------------------------------------------------------
------------------------SS-S----------------S---S------------------------S-SS-SS
SS-S--------------------S-----------S-------------------------------S-----------
------------------------------------S------S------------------------------------
--------------------------------------------------------S----------------S------
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-------------------------------------------------------S--------------------SSSS
------------------S-------------------------------S---------------------S-------
---------------------------------------------------------S------S-------------S-
--------------------------------------------------------------------------------
---------------------S-------------S-----------------S--------------------------
--------------------------------------------------------------------------------
-S---------------------------------------------------S----------S-------S-------
---------------------------------S----------------------------------------------
S--------------------------------------------------S--S-------------------------
----------------------------S---------------------------------S-----S-----------
---------------------S-------------------------------------S--------------------
----------S---------------S-------------S--------S-----------------SSSS--S-SSSSS
S-------------------------------------------------------------------------------
--S-----------------------------S-----------------------------------------------
-----------S------------S----------S----------S--S---------S--------------------
---S--------------SS------------------------S---SS------------------------------
-S----------------S--------------------SSS----SS-S---SS--------SS-SSSS--------SS
-S--------------------------------S---------------------------------------------
-------------------------------------------SSSS---------S-----------------------
----------------------SSSSSSS---S--SS------------------S--------------------S---
----------------------S-----------S---------------------------------------------
--S-----------------------------------------------------------------S-S---------
--------------S-S---------------------------------------------------------------
-----------------------------------SS------------------------------------S---S--
--S--S-----S--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------S-SSSSSSSSSSSSSSSSSSSSS---------------------
----------------------------------------------------------------------------S---
------S--------------S-----------------S-S----------S---------S-----------------
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---------------------------------S--------------SS-------S----------SS-S--S-----
------------------------------------S-S----------S------------------S----------S
-------------S----------S----S-S----SS---------------------------S--------------
-------S------
>forward_1122
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--------------------------------------------------------------TGAATGCCATCAAGGGTG
CG------------------------------------------------------------------------------
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>reverse_2197
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------------------------------------CAAGTACACCACCGTCGACA------------------------
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