>input_sequence_67817
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--------------------------------------------------------------------ATGTTGCCTTAC
CACCCTAACCCTCACGGCTTCTGGATCTCCCGAGAACCACCCGCGCAGGTGCCAAACCCTGCCAGCGGCTTCGCCGTGGC
GCCTCCCGCGCATCTGGACCATCAGATTCAGCACTACGACCACTTCTTCCCCGGCCACGGCAACCAGTTCAACTCCGAGA
CGCTGGAAGCGGTGCTCATGAGGCCGCGTCCGCCGGCTCCTCCTCCGGCGGAGATGCCGCCGGCTAACGAGGCAAGAACC
GGCGCAGTGCAGGCCGCCGGCACCGGACACGCCAGGGCGAGGAAGCGGCCTTTCAGGACGGACCGGCACAGCAAGATCCG
GACGGCACAGGGCGTCCGGGACCGCCGGATGCGGCTCTCCCTGGACGTCGCGCGTGACTTCTTCGCGCTGCAGGACCAGC
TCGGCTTCGACAAGGCCAGCAAGACGGTGGACTGGCTGCTCACCCAGTCCAAGCCAGCCATCGACCGCCTA---TCCGAG
TCCTCTCGGCTCAACGCCGCTAGAGCGGGAGAAGATGGCATGTCGTCGCTATCATCGGTGGAGCGTGAAGGCCGCCGGCT
CAAGGAGACGGAGCTGGCTACCGGGTCGGGAAAGGGGGCAGCGGATGTGGAGAAGGCGATGAGGGCGAGGGGTGGTGGAA
CGTCGGTGCTCATGGAGCACAGACGCGAGATGAACGGCGGCCTCATGTCGGCTTCGATGACTGGTGGGGAGTACTACTAC
GACCTCGGCGAGATGATGTGCATCAACGCAGGAGAATGCGATGACGATGGCGAGTACGACGAAGACGGTGATTTCTTGGA
CGGTATGCAATACTAG----------------------------------------------------------------
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>chr5B_1_TraesCS5B01G205600
AGCTAGC-TTGTCACATGGATTAACTTATGATGACATATGAGTTCTTGTACTATAAAATCATACGTACATGCA----CAC
TGC------------ATATGCAGAGACCACATAGATTTACATGTCACATAAACGCCTGCATTCCCACGTGTCCCTACAGT
AGAGAACTGTAGCCCTCGATCGACCGCAATAATGCCTTCATCATTCCCTCGCTAACTCTCCTTACTACGCACACCAACAT
C--AGACAGCTACGTACCTACCTAATACCTACGGGTCGAGTTTGAGCTATGCTTAGCCCAGCCTGCCGCCCTGCGCGAAC
GCTCGCAGTAGTGACGCAACAGTCGATGGTCAGACAGCGGGCCACCACTCACAACGACGGACGACGCCATTGCTCGAAAC
TCAAATGCCCTCGCTGCCCTCTGTAACCTAGCTATAGCATAGCACGCAGAAAAATCACTGGGAAAAACATACAAACAAAA
CGCGCGCGTACACATCGCACCCACACCCTATGCTAGCTCCACTAATAAATACTCCCTCCATTCGGAATTATTTGTCGCGA
AAATGAATGTATCTAGACATATTTTAGTTCTAGATACATCCATTTCCAAGACAAGTAATTCCGAACGGAGGGAGTACCTA
GCTGCCTAGC----TAGCTCACCAGTCACCACTCCCATATCTTTCAGCTTCCTGTGCACCC-TTTCTCCATCACCAACCT
TTGCTCTCCCTTCTTTCCCTTCCCTGGCTGGGCCTTCCCACTAAACCCATTGATGGATCGATGCATATGTACATCAGTGG
GAATGGACACCATGCTGAGCTGAGCTTATATCAACATCGTTCGTATACCTATTACCTAGTCACTTCCAATATAGTCCATC
TCATATTTCTCATGTGAAAGAGGAAGAAGAGAGTGCTCGACCAAGGAGTAGAATCAACTGTAGTACCAGATCAAGAAGTA
GATCTTGCTA----GGAAGATATAAAGTACTCAAGTGCAGGCAGCTACTAGCGCTACTGCACTCGCCAATGTTGCCTTAC
CACCCTAACCCTCACGGCTTCTGGATCTCCCGAGAACCACCCGCGCAGGTGCCAAACCCTGCCAGCGGCTTCGCCGTGGC
GCCTCCCGCGCATCTGGACCATCAGATTCAGCACTACGACCACTTCTTCCCCGGCCACGGCAACCAGTTCAACTCCGAGA
CGCTGGAAGCGGTGCTCATGAGGCCGCGTCCGCCGGCTCCTCCTCCGGCGGAGATGCCGCCGGCTAACGAGGCAAGAACC
GGCGCAGTGCAGGCCGCCGGCACCGGACACGCCAGGGCGAGGAAGCGGCCTTTCAGGACGGACCGGCACAGCAAGATCCG
GACGGCACAGGGCGTCCGGGACCGCCGGATGCGGCTCTCCCTGGACGTCGCGCGTGACTTCTTCGCGCTGCAGGACCAGC
TCGGCTTCGACAAGGCCAGCAAGACGGTGGACTGGCTGCTCACCCAGTCCAAGCCAGCCATCGACCGCCTA---TCCGAG
TCCTCTCGGCTCAACGCCGCTAGAGCGGGAGAAGATGGCATGTCGTCGCTATCATCGGTGGAGCGTGAAGGCCGCCGGCT
CAAGGAGACGGAGCTGGCTACCGGGTCGGGAAAGGGGGCAGCGGATGTGGAGAAGGCGATGAGGGCGAGGGGTGGTGGAA
CGTCGGTGCTCATGGAGCACAGACGCGAGATGAACGGCGGCCTCATGTCGGCTTCGATGACTGGTGGGGAGTACTACTAC
GACCTCGGCGAGATGATGTGCATCAACGCAGGAGAATGCGATGACGATGGCGAGTACGACGAAGACGGTGATTTCTTGGA
CGGTATGCAATACTAGTTCCAGCCTTCCAGGTACTAGCGATCGAGCAGCTTAATTAGGTCTTGATCTGCCGAGCGCATCA
TTGTCTTAGTTAATTATATTGCATGTGTACGGATCTACTACTCTCTTGGTACTATTTGCAAATCTCATTGTTTTGTCTTA
TGGTGCTATTTTTTCTTTGCTTTGAGGTGCCTCTTAAGATTTTCTTGAAGTCCATCGCTCTTTTTAATTTCATGCAACAT
CTGGCTTTCTTTCATGTCTTAATTTGGGAATTATTTTGTAAGATTTTGTTGAAGCTGATCATCTTAAGCTAGAGAGGGAG
AAGCTAA----ATGGTTGGTTTGTTCACTGCGTTTATGCTCATA-----------AGATGACAGTTTATGTAGATCAGCG
AAGGTACTTCAGGTAAGGAGGATAG---ACAGAGCGTAGAAAAGTTCAGCACATGCAGTCAGCACTTTTATGATCAAACA
AAAGAGTATCAGGAAACCGTATGCAAATATATAAAGAATTCGTAGTGTTTAGCCTGTTTAGGTCTGTACCTTCTTGACCT
AGAATAAA----GATGGTCTTCC--TCGCAAATAAAATAAAATAAGGATTGCCTATTTTTGCTAAGTTGTACTTTCTTTT
CTACACAAAAGCTTTGCATCAGTAAAAGAAAATAAGTTCCATTTGGATATATAT----GTAACTCACTGGCTCAGTGTCC
CTATGAGCCTAGCTAACATATACTCCATTTGGATGGTGTATATG----AGTTATTAGTTGCAGTCTACAAAGTACATGGT
TATCTGGAATATCTTTCCAGAAGCAATCATTTGCAAGTACACATTGTTTTGGATGGTTAGCTGGAGTTATACAAGAGCAC
GACAAAAGGGATAAATATCAGATTCTAAGTTTAAAAGATTTAGGACTGAAA-AAGTTGGAAGTACAGGGATTAGTAACTA
ATATTTATGCAGTTCACAATTTTTATTTGTTTGATTTAGCTTCATTCGTCAACT---GAAACTTAGTTTCATCCTAATGT
AAATCAAGTTGA
>chr5D_1
AGCTAGCTTTGTCACATGGATTAACTTATGATGACATATGAGTTCTTGTACTATAAAATCATACGTACATGCA----CTG
ATGCACACTGCATATATATGCAGAGACCACATAGATTTACATGTCACATAAACGCCTGCATTCCCACGTGTCCCTACAGT
AGAGGACTGTAGTCCTCGATCGACCGCAATAATGCCTTCATCATTCCCTCGCTAACTCTCCTTACTACGCACACCAACAT
CGCAGACAGCTACGTACCTACC---TACCTACGGGTCGAGTTTGAGCTATGCTTAGCCCAGCCTGCCGCCCTGCGCGAAC
GCTCGCAGTAGTGACGCAACAGTCGATGGCCAGACAGCGGGCCACCACCCACAGCGACGGACGACGCCATTGCTCAAAAC
TCAAATGCCCTCGCTGCTCTCTGTAACCTAGCTATAGCATAGCACGCAGCAAAATCACTGGTAAAAACATACAAACAAAA
CGCGCGCGTACACATCGCACCCACACCCTATGCTAGCTCCACTAATAAA-------------------------------
--------------------------------------------------------------------------TACCTA
GCTGCCTAGC----TAGC-------TCACCACTCCCATATCTTTCAGCTTCCTGTGCACCCCTTTCTCCATCACCAACCT
TTGCTCTCCCTTCTTTCCCTTCCCTGGCTGGGCCTTCCCACTAGACCAATTGATGGATCGATGCATATGCACATCAGTGG
GAATGGACACCATGCTGAGCTGAGCTTATATCAACATCGTTCGTATACCTATTACCTAGTCACTTCCAATATAGTCGATC
TCATATTTCTCATGTGAAAGAGGAAGAGGAGAGTGCTCGACCAAGGAGT-GAAGCAACTGTAGTACCAGATCAAGAAGTA
GATCTTGCTA----GGAACATATAAAGTACTCAAGTGCAGGCAGCTACTAGCGCTACTGCACTCGCCAATGTTGCCTTAC
CACCCTAACCCTCACGGCTTCTGGATCTCCCGAGAACCACCCGCGCAGGTGCCAAACCCTGCCAGCGGCTTCGCCGTGGC
GCCTCCCGCGCATCTGGACCATCAGATTCAGCACTACGACCACTTCTTCCCCGGCCACGGCAACCAGTTCAACTCCGAGA
CGCTGGAGGCGGTGCTCATGAGGCCGCGTCCGCCGGCTCCTCCTCCGGCGGAGATGCCGCCGGCTAACGAGGCAAGAACC
GGCGCAGTGCAGGCCGCCGGCACCGGACATGCCAGGGCGAGGAAGCGGTCGTTCAGGACGGACCGCCACAGCAAGATCCG
GACGGCACAGGGCGTCCGGGACCGCCGGATGCGGCTCTCCCTCGACGTCGCGCGTGACTTCTTCGCGCTGCAGGACCAGC
TCGGCTTCGACAAGGCCAGCAAGACGGTGGACTGGCTGCTCACCCAGTCCAAGCCAGCCATCGACCGCCTATCGTCCGAG
TCCTCTCGGCTCAACGCCGCTAGAGCGGGAGAAGATGGCATGTCGTCGCTATCATCGGTGGAGCGGGAAGGCCGCCGGCT
CAAGGAGACGGAGCTGGCTGCCGGGTCGGGAAAGGGGGCAGCGGATGTGGAGAAAGCGATGAGGGCGAGGGGTGGTGGAA
CGTCGGTGCTCATGGAGCACAGACGCGAGATGAACGGCGGCTTCATGTCGGCTTCGATGACTGGTGGGGAGTACTACTAC
GACCTCGGCGAGATGATGTGCATCAACGCAGGAGAATGCGACGACGATGGCGAGTACGACGAAGACGGCGATTTCTTGGA
CGGTATGCAATACTAGTTCCAGCCTTCCAGGTACTAGCGATCGAGCAGCTTAATTAGGTCTTGATCTGCCGAGCGCATCG
TTGTCTTAGTTAATTATATTGCATGTGTACGGATCTACTACTCTCTTGGTACTATTTGCAAATCTCATGGTTTTGTTTTA
TGGTGCTATTTTTTCTTTGCTTTGAGGTGCCTCTTAAGATTTTCTTGAAGTCCATCGCTCTTTTTAATTTCATGCAACAT
CTGGCTTTCTTTCATGTCTTAATTTGGGGATTATTTTGTAAGATTTTGTTGAAGCTGATCATCTTAAGCTAGAGAGGGAG
AAGCTAA----ATGGTTGGTTTGTTCACTGCGTTTATGCTCATA-----------AGATGACAGTTTATGTAGATCAGCG
AAGGTACTTGAGGTAAGGAGGATAG---ACAGAGCGTAGAAAAGTTCAGCACATGCAGTCAGCACTTTCATGATCAAACA
CAAGGGTATCAGGAAACCGTATGCAAATATATAAAGAATTCGTAGTGTTTAGCCTGTTTAGGTCTGTACCTTCTTGACCT
AGAATAAATAAAGATGGTCTTCC--TCGCAAATAAAATAAAATAAGGATTGCCTATTTTTGCTAAGTTGTACTTTCTTTC
CTACACAAAAGCTTTGCATCAGTAAAAGAAAATAAGTTCCATTTGGATATATATGTAAGTAACTCACTGGCTCAGTGTCC
CTATGAGCCTAGCTAACATATACTCCATTTGGATGGTGTATATG----AGTTATTAGTTGCAGTCTACAAAGTACATGGT
TATCTGGAATATCTTTCCAGAAGCAATCATTTGCAAGTACACATTGTTTTGGATGGTTAGCTGGAGTTATACAAGAGCAC
GACAAAAGGGATAAATATCAGATTCTAAGTTTAAAAGATTTAGGACTGAAA-AAGTTGGAAGTACAGGGTTTAGTAACTA
ATACTTATGCAGTTCACAATCTTTATTTGTTTGATTTAGCTTCATTCGTCAACT---GAAACTTAGTTTCATCCTAATGT
AAATCAAGTTGA
>chr5A_1
AGCTAGC-TTGTTAAATGGATTAACTTATGATGGCATATGAGTTCTTGTACTATAAAATCATACGTACATGCATGCACAC
TGC------------ATATGCTGAGACTACATAGATTTACATGTCACATAAACGCCTGCATTCCCACGTGTCCCTACAGT
AGAGAACTGTAGCCCTCGATCGACCGCAATAATGCCTTCATCATTCCCTCGCTAACTCTCCTTACTACGCACACCAACAT
C--AGACAGCTACGTGCCTACC---TACCTACGGATCGAGTTTGAGCTATGCTTAGCCCAGCCTGCCGCCTTGCGCGAAC
GCTCGCAGTAGTGACGCAACAGTCGATGGCCAGACAGCGCGCCACCACCCACAGCGACGGACGACGCCATTGCTCAAAAC
TCAAATGCCCTCGCTGCCCTCTGTAACCTAGCTACAGCATAGCACGCAGCAAAATCACTGGTAAAAACATACAAACAAAA
CGCGCGCGTACACATCGCACCCACGCCCTATGCTAGCTCCACTAATAAA-------------------------------
--------------------------------------------------------------------------TACCTA
GCTGCCTAGCTAGCTAGC-------TCATCACTCCCATATCTTTCAGCTTCCTGTGCACCCCTTTCTCCATCACCAACCT
TTGCTCTCCCTTCTTTCCCTTCCCTGGCTGGGCCTTCCCACTAGACCAATTGATGGATCGATGCATATGCACATCAGTGG
GAATGGACACCGTGCTGAGCTGAGCTTATATCAACATCGTTCGTATACCTATTACCTAGTCACTTCCAATATAGTCGATC
TCATATTTCTCATGTGAAAGAGGAAGAGGAGAGCGCTCGACCAAGGAGTAGAAGCAACTGTAGTACCAGATCAAGAAGTA
GATCTTGCTAGCTAGGAACATATAAAGTACTCAAGTGCAGGCAGCTACTAGCGCTACTGCACTCGCCAATGTTGCCTTAC
CACCCTAACCCTCACGGCTTCTGGATCTCCCGAGAACCGCCCGCGCAGGTGCCAAACCCTGCCAGCGGCTTCGCCATGGC
GCCTCCCGCGCATCTGGACCATCAGATTCAGCACTACGACCACTTCTTCCCCGGCCACGGCAATCAGTTCAACTCCGAGA
CGCTGGAGGCGGTGCTCATGAGGCCACGTCCGCCGGCTCCTCCTCTGGTGGAGATGCCGCCGGCGAACGAGGCAAGAACC
GGCGCAGTGCAGGCCGCCGGCACCGGACACGCCAGGGCCAGGAAGAGGCCGTTCAGGACGGACCGGCACAGCAAGATCCG
GACGGCGCAGGGCGTCCGGGACCGCCGGATGCGGCTCTCCCTCGACGTCGCGCGTGACTTCTTCGCGCTGCAGGACCAGC
TTGGCTTTGACAAGGCCAGCAAGACGGTGGACTGGCTGCTCACCCAGTCCAAGCCAGCCATCGACCGCCTATC---CGAG
TCCTCTCGGCTCAACGCCGCTAGAGCGGGAGAAGATGGCATGTCGTCGCTATCATCGGTGGAGCGTGAAGGCCGCCGGCT
CAAGGAGACGGAGCTGGCTGCCGGGTCGGGAAAGGGGGAAGCCGATGCGGAGAAAGCGATGAAGGCGAGGGGTGGTGGAA
CGTCGGTGCTCATGGAGCACAGACGCGAGA---ACGGCGGCCTCATGTCGGCTTCGATGACTGGTGGGGAGTA---CTAC
GACCTCGGCGAGATGATGTGCATCAACGCAGGAGAATGCGACGACGATGGCGATTACGACGAAGACGGTGATTTCTTGGA
CGGTATGCAATACTAGTTCCAGCCTTCCAGGTACTAGCGATCGAGCAGCTTAATTAGGTCTTGATCTGCCGAGCGCATCA
TTGTCTTAGTTAATTATATTGCATGTGTACGGATCTACTACTCTCTTGGTACTATTTGCAAATCTCATGGTTTTGTTTTA
TGGTGCTATTTTTTCTTTGCTTTGAGGTGCCTTTTAAGATTTTCTTGAAGTCCATCGCTCTTTTTAATTTCATGCAACAG
CTGGCTTTCTTTCATGTCTTAATTTGGGGATTATTTTGTAAGATTTTGCTGAAGCCGATCATCTTAAGCTAGAGACGGAG
AAGTTAAATGCATGGTTAGTGTGTTCACTGCGCTTATACTCATGAGATACTCATGAGATGACAGTGTATGTAGAACAGCG
AAGGTACTTCAGGTAAAGGAAAGTGAATACAGAGCGTATAAAGGTTCAGCACATGCAGTCAGCACTTTTATGATCAAACA
CAAGAGTATCAGGAAACCTTATGCAAATATATAAAGAATTCGTAGTGTTTAGCCTGTTTAGGTCTGTACCTTCTTGACCT
AGAATAAA----GATGGCCTTCCTCTCGCAAATAAAATAAAATAAAGATAGCCTATTTTTGCTAAGTTGTACTTT-TTTC
CTACACAAAAGCTTTGCATCAGTAAAAGAAAATAAGTTCCATTTGGATATATATGTAACTAACTCACTGGCT-AGTGTCC
CTATGAGCCTAGATAACATATATA----TTGGATGGTGTATATGCATGAGTTATTAGTTCCAGTCTACAAAGTACATGGT
TACCTGGAATATCTTTCCAGAAGCAATCATTTGTAAGTACACATTGTTTTGGATGGTTAGCTGGAGTTATACAAGAACAC
GACAAAGGGAT--AAAATCAGATTCTAAGTTTAAAAGTTTTAGGACTGAAAGAAGTTGGAAGTACAGGCTTTAGTAACTA
ATACTTATGCAGTTCACAATCTTTATTTGTTTGATTTAGCCTCATTTGTCAACCTTAGAAACTTAATTTCATCCTAATGT
AAATCAAGTTGA
>SNPs
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----------------------SSS-------------------------------------------------------
-----------------------------S------------------S----S---------------------S----
-------------------------------------------------S-----------S------------------
-------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
------------------SSSSSSS-------------------------------------------------------
-------------------------------------------S---S---------------------S----------
----------------------------------------------------------------------------S---
---------------------------S-------------------------S--------------------------
------------------S-------------------------------------------------------------
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-------S------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
------------------------------------------S-------------------------------------
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-------------------S----------------------------------S-------------------------
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-----------------------------------------S--------------------------------------
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--------------------------------------------------------------------S-------S---
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----------------------------S---------------------------------------------------
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S-------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
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---------------------------------------------------------------------S----------
---S----------------S-----------------------------------------------------------
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>forward_665
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-----CTGCCTAGCTAGCTCACCAG-------------------------------------------------------
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>reverse_1802
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-----------------------------------------TGACGATGGCGAGTACGAC--------------------
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>forward_1620
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-AAGGAGACGGAGCTGGCTA------------------------------------------------------------
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>reverse_2480
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-------------------------------------------------------------------------------T
CTACACAAAAGCTTTGCATCAGT---------------------------------------------------------
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