>input_sequence_67804
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----------------------ATGATGCGGTACGCCACGCCGCAGTCCACCCCGCCGATGTCGCCGCTCCACGGTACGG
CGACGCCTCGCACTCCCGGCGCGTACTCTGAGATGCCGCCGCCCTCGCCACGGCCCGCGATCACGCTCAC----------
---------------------CCCGCCCCCGTCCAAGAAGAAGCAGCGCCGCACGGCCGCGCGCTCGCTCCGCGCCATCC
GCGCCGTGCGCGCGCTGTTCCGGTCCCTCCCGATCCTCGCCCCGGCGTGCCGCTTCCACGGCATCGTCCCGCGGCACGGC
GGGCCGTCGCGGAT-------------GCACGACGGCCACGTCAGCGGCGCCTCGCGCACGACGGGGACGCTGTTCGGGT
ACCGCAGGGCGCGGGTGACGCTGGCGGTGCAGGAGACGCCCGGGAGCGTGCCCATCCTGCTGCTGGAGCTGGCGATGCAG
ACCGGCAGGTTCATGCAGGAGATGGGCGCCGAG---CACCTGCGCGTGGCGCTCGAGTGCGAGAAGAAGC---------C
GCCGGGCGCCGGCGCCGGCATCGGCCGCACGCGCCTGCTCGACGAGCCGCTGTGGACGGCCTACGTGAACGGGCGGAAGA
TCGGGTACGCCATGCGCCGGGAGCCCACGGAGGACGACCTCACGGTCATGCAGCTGCTGCGCACCGTGTCGGTCGGCGCC
GGCGTGCTGCCGAACGACGTCATGGGTTGCGACACCGCCGAGGGGCAGGA------GGCCGGCGACCTGGCGTACATGCG
CGCGCGCTTCGACCGCGTGGTGGGGTCCCGGGACTCCGAGTCGCTGTACATGCTCAACCCTGACGGGAACAATGGGCCAG
AGCTTAGCATCTTCTTCATTAGGATATGA---------------------------------------------------
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>chr3D_1_TraesCS3D01G327200
TGAAGAAAAAACGGGACGACCCAGTACCCACGCGAGGGAGGGAACCTTCAGGCGAGGGGAGCATGCATCTTGCTATAAGC
GAGATACAACTCCCATGATAATTCCAGTTCGTTGTATAAAAATGTATGCGAGCGTATATTAGTCAGTTATCTAAAAAAAC
ATTTCACATCAGTCACTTTTTATCAAGACCATCTAATAATCATCCAGCGGACAGAATTAGATCACGCACCGTTCGTCTTT
TCCCTCCCTTTCTTCTTCCTCCATGCGGCGCCAACCGACCAGGCCCATCCACCTGCCTTTGGCACCACGGACGGTGGGCG
CTGATGCGGACCACCTCGTCCTCCCCTCAACCTCCCCCAACGTAGGTTCTGGCTACCGCCTCGACCATCCCTCTAAACCC
TCACGACACCCCCTCCCCCTCGCCCTCCCCCCCTAATTAAGTTTCTTCCTCGCCTCCAC---------------------
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-------------------------------------CTGGGAGACCGTAGCTCGCTGCCGCTCGCAAGGTCGTCCACGC
-TTCGGCGAGGTCCTGGCTCGGCCTCGCCGTGCCCGACACTTGTCACACAGTCCCCGCCTTCGGCGTGGTGCAAAGCAGA
AAGTGATTCACACAACAAC--AAAATTCAGGCATATGAGATATAGCAAAATCAAAAATGTATTACACATATTCATAAAAC
AGAGGAAGTTCATAGCGCAAGTACTCCTAAAGAGACTCGCAAATTTAAAAAGTACTCCCAAAGAGGCACCGGGACCGGGA
GGTTCTCTATATAAAATGAGCATCAAAATATACGTGAATGGAGAAGAACCTGA-AAAAAAAAGGTCTCTTGACCAGAAAA
ACTGAAGTAAAACCCATCGTGCATGCCTCATCATACCTTCGCGTACGTGCATTCCACCAACCTAAGCCAACGGGACACCA
TCTCAAAAACCCCGGGCCCTCTCCTCAAAGCATCACAGGACGATGCCAGACCATCGCGCTATCTCGGCACCGAACGCGTC
CACCACCAAGCCGGCGACGGCCATGATGCGGTACGCCACGCCGCAGTCCACCCCGCCGATGTCGCCGCTCCACGGTACGG
CGACGCCTCGCACTCCCGGCGCGTACTCTGAGATGCCGCCGCCCTCGCCACGGCCCGCGATCACGCTCAC----------
---------------------CCCGCCCCCGTCCAAGAAGAAGCAGCGCCGCACGGCCGCGCGCTCGCTCCGCGCCATCC
GCGCCGTGCGCGCGCTGTTCCGGTCCCTCCCGATCCTCGCCCCGGCGTGCCGCTTCCACGGCATCGTCCCGCGGCACGGC
GGGCCGTCGCGGAT-------------GCACGACGGCCACGTCAGCGGCGCCTCGCGCACGACGGGGACGCTGTTCGGGT
ACCGCAGGGCGCGGGTGACGCTGGCGGTGCAGGAGACGCCCGGGAGCGTGCCCATCCTGCTGCTGGAGCTGGCGATGCAG
ACCGGCAGGTTCATGCAGGAGATGGGCGCCGAG---CACCTGCGCGTGGCGCTCGAGTGCGAGAAGAAGC---------C
GCCGGGCGCCGGCGCCGGCATCGGCCGCACGCGCCTGCTCGACGAGCCGCTGTGGACGGCCTACGTGAACGGGCGGAAGA
TCGGGTACGCCATGCGCCGGGAGCCCACGGAGGACGACCTCACGGTCATGCAGCTGCTGCGCACCGTGTCGGTCGGCGCC
GGCGTGCTGCCGAACGACGTCATGGGTTGCGACACCGCCGAGGGGCAGGA------GGCCGGCGACCTGGCGTACATGCG
CGCGCGCTTCGACCGCGTGGTGGGGTCCCGGGACTCCGAGTCGCTGTACATGCTCAACCCTGACGGGAACAATGGGCCAG
AGCTTAGCATCTTCTTCATTAGGATATGATGATCAAGCTTATGGCAGTT-TCTGATTTTTTGCATTACTGAGATTTTGGA
ACTATGAGGCTGATTTTGTTGTCTGGGTGAAAATGGGAGGTGCCAGTATGCTTTTGTTTGTATGATATGA----------
TAGTTGCCTTCGCCCCCAAAGACTCATTTTCTAAGCATGTGTAGAAGCAGCATTATTCAGGAATAAAAATTGTGTTTGCG
GAATTGATGCATCTACGACTGAACTAGCAAATTTGGAAACAACTGAAAGACAAGATATGTTCAAGTGGAACGGAAGCTCG
--AAAGCTGTTTGCATTCT-----CGCAGCATCATGATCGATCTTCTTTTTCTCAAGGATTCGCAAACGCTCAAATGGTA
CAACAGAGTAAGAGTAGTGCTACCGTCCGATCAAGCGCGCGTCAACTCCCCAGTCTGAGGCCGGCTCACTTTCAACTTCA
TGCTTCTGCACGCTCGCCGGCCGCCACGCGCTCACCCTCGGCCACCACGCGCTCGCCCGCGCTTGACGGACTGAGATCTT
TCAACTTCATGCTTCTGCACACTTGGTGAAGTCACGCTGCAACTTTAGCCATCTAATCTCCATCCAAAACACATCCAACG
GTCTACATGAGACACAGGCAAAAACTACAGGACTTAGCAGTTTTGCAGCCTAGCAGCAAACAACAGTACAGTCTAGCAGC
AAACAACGATACAGTGTGCTTCGATTCAGTTTGATTTGAACAGATTGTAACCCAAAAAATTGAACAGATTATACAGTACC
ATATTATGCAATCAAAGTTGAACAATTCAATTCCATTTGACACCGAATCCAGTAGCATTTGACATTAAAAGGCTGTAGCA
CATAACAATTGAATGCTACAGCAAGAAATGCCAATATTGAGTAATCATCCATGTACACAAAAGCAGGCCATTTCACTTGT
ACACTTCGGCCAAAAAAGACTGATTAACTCCCCAAAATACAGTAGTTAACCTGTCCAAAATACTACCTAACAACTTTAAA
GATACTA
>chr3B_53
----------------------------------------------------CGAGGGGAGCATGCATCTTGCTATAAGC
GAGATATAGCTCCCGTGATAATTCCAGTTTGTTGTATAAAAATGTATGCGAGCATATATTAGTCAGTTATCCAAACAAAC
ATTTCACACCAGTCACTTTTTATCAAGACCATCTAATAATCATCCAGCGGTTAGAATTAGATTGCACACCGTTGGTCTTT
TCCCTCCATTTCTTCTTCCTCCATGCGGCACCAACCGACCAGGCC-ATCCACCTGTCTTTGGTACCACGGACGGTCGGCG
CTGACGCGGACCACCTCGTCCTCCACTCAACCTCCCCCAACGTAGGTTCTGGCTACCGCCCCGACCATCTCTCTAAACCC
TCACGACACCCCCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGGGACACCGTAGCTCGCTGCCGCTCGCAGGGTCGTTCGCGG
GTTCGGCGAGGTCCTGGCTCGGCCTCGCCGTGGCCGGCACTCGTCACACAGTCCCCGCCTTCGGCGTCGTGCAAAGTAGA
AAGTGACTCGTAGAACAAAAAAAAAATCAGCCATATGACATATAGGAAAAGCGAAAATGTATACACAATTTTCATAAAAC
AAAGGAAGTTCATAACGCAAGTACTCCCAAAGAGATTCGCAAATTTTAGAAGTACCCCCAAAGAGGCACCGGGACCGGGA
GCTTCTCTCTATAAAATGAGCATCAAAATATACATGAATGGAGAAGAACCTGG-AAAAAAGCAGTCCCTTGACCAGAAAA
AAATGAAGTAAATCCATCGTGCATGCCTCATCATACCTTCGCGTACGTGCATTCCACCAACCTAAGCCAACGAGACACCA
TCTCAAAAACCCCGGGCCCTGTCCTCAAAGCATCACAGGACGATGCCAGAACATCGCGCTATCTCGGCAACGAACGCGTC
CACCACCAAGCCGGCGACGGCCATGATACGGTACGCGACGCCGCAGTCCACCCCGCCGATGTCGCCGCTGCACGCCCCGG
GGACGCCTCGCACTCCCGGCGCGTACTCCGAGCTGCCGCCGCCCTCGCCCAGGCCCGCGATCACGCTCAC----------
---------------------CCCGCCGCCGTCCAAGAAGAAGCAGCGCCGCACGGCCGCGCGCTCGCTCCGCGCCATCC
GCGCCGTGCGCGCGCTGTTCCGGTCCCTCCCGATCCTCGCCCCGGCGTGCCGCTTCCACGGCATCGTCCCGCGGCACGGC
GGGCCGTCGCGGAT-------------GCACGACGGCCACGTCAGCGGCGCGTCGCGCACGACGGGGACGCTGTTCGGGT
ACCGCAGGGCGCGGGTGACGCTGGCGGTGCAGGAGACGCCCGGGAGCGTGCCCATCCTGCTGCTGGAGCTGGCGATGCAG
ACCGGCAGGTTCATGCAGGAGATGGGCGCCGAG---CACCTGCGCGTGGCTCTCGAGTGCGAGAAGAAGC---------C
GCCTGGCGCCGGCGCCGGCATCGGCCGCACGCGCCTGCTCGACGAGCCGCTGTGGACGGCCTACGTGAACGGGCGGAAGA
TCGGGTACGCCATGCGCCGGGAGCCCACGGAGGACGACCTCACGGTCATGCAGCTGCTGCGCACCGTGTCGGTCGGCGCC
GGCGTGCTGCCGAACGACGTCATGGGTTGCGACACCGCCGAGGGGCAGGA------GGCCGGCGACCTGGCGTACATGCG
CGCGCGCTTCGACCGCGTGGTGGGGTCCCGGGACTCCGAGTCGCTGTACATGCTCAACCCTGATGGGAACAATGGCCCAG
AGCTTAGCATCTTCTTCATTAGGATATGATGATCAAGCTTATGACAGTTCTGA---TTTTTGCATTACTGAGATTTTGGA
ACTCTGAGGCTGATTTTGTTGTCTGGGTTAAAATGGGAGGTGCCAGTGTGCTTTTGTTTGTATGATACTTATGATACTAC
TAGTTGCCTTCGCCCC-AAAGACTCATTTTCTAAGCACGTGTAGAAGCAGCATTATTGAAGAATAAAATTTTTGTTTGTG
GAATTGATGCATTTAGGATTGAACTAGCAAATTTGAAAACAAATGAAAGACAAGATCTGTTCAAGTGGAACGAAAGCTCG
--AAAGCTGTTTGCATTCTCTTCTCGCAGCATCATGATCGATCTTCTTTTTCTCAAGGATTCGCAAACGCTCAAATGCTA
CAACAGAGTAAGGGTAGTGCTACCGTCCGATCAAGCGCGCGTCAACGCCCCAGACTGAGGCCGCCTCACTTTCAACTTCA
TGCTTCTGCGCGCTCGCCGGCCGCCACGCGCTCGCCC-------------------------------------------
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>chr3A_738
GAGGTACT------------------------------------------------------------------------
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-----TCTATATAAAATGAGCATCAAAATATACATGGATGGAGAAGAACCTGAAAAAAAAACAGTCTCTTGACCAGAAAA
ACTGAAGTAAGACCCATCGTGCATGCCTCATCATACCTTCGCGTACGTGCATTCCACCAACCTAAGGCAACGAGACACCA
TCTCAAAAACCCCGGGCCCTCTCCACAAAGCATCACAGGACGATGCCAGACCATCGCGCTATCTCGGCACCGAACGCGTC
GACCACCAAGCCGGCGACGGCCATGATACGGTACGCCACGCCGCAGTCCACCCCGCCGATGTCGCCGCTGCACGCCCAGG
GGACGCCTCGCACTCCCGGCGCGTACTCCGAGCTGACGCCGCCCTCGCCACGGCCCGCGATCACGCTCAC----------
---------------------CCCGCCGCCGTCCAAGAAGAAGCAGCGCCGCACGGCCGCGCGCTCGCTCCGCGCCATCC
GCGCCGTGCGCGCGCTGTTCCGGTCCCTCCCGATCCTCGCCCCGGCGTGCCGCTTCCACGGCATCGTCCCGCGGCACGGC
GGGCCGTCGCGGAT-------------GCACGACGGCCACGTCAGCGGCGCGTCGCGCACGACGGGGACGCTGTTCGGGT
ACCGCAGGGCGCGGGTGACGCTGGCGGTGCAGGAGACGCCCGGGAGCGTGCCCATCCTGCTGCTGGAGCTGGCGATGCAG
ACCGGCAGGTTCATGCAGGAGATGGGCACCGAG---CACCTGCGCGTGGCGCTCGAGTGCGAGAAGAAGC---------C
GCCGGGCGCCGGCGCCGGCATCGGCCGCACGCGCCTGCTCGACGAGCCGCTGTGGACGGCCTACGTGAACGGGCGGAAGA
TCGGGTACGCCATGCGCCGGGAGCCCACGGAGGACGACCTCACGGTCATGCAGCTGCTGCGTACCGTGTCGGTCGGCGCC
GGCGTGCTGCCGAACGACGTCATGGGGTGCGACACCGCCGAGGGGCAGGA------GGCCGGCGACCTGGCGTACATGCG
CGCGCGCTTCGACCGTGTGGTGGGGTCCCGGGACTCGGAGTCGCTGTACATGCTCAACCCTGATGGGAACAATGGGCCAG
AGCTTAGCATCTTCTTCATTAGGATATGATGATCAAGCTTATGACAGTTTTCTGATTTTTTGCATTACTGAGATTTTGGA
ACTCTGAGGCTGATTTTGTTGTCTGGGTGAAAATGGGAGGTGCCAGTATGCTTTTGTTTGTATGAC--------------
-AGTTGCCTTCGCCCCCAAAGACTCATTTTCTAAGCATGTGTAGAAGCAGCATTATTCAGGAATAAAATTTGTGTTTGTG
GAATTGATGCATTTACGATTGAACTAGCAAATTTGGAAACAACTGAAAGACAAGATATGTTCAAGTGGAACGAAAGCTCT
TTAAAGCTGTTCGCATTCT-----CGCAGCATCATGATCGATCTTCTTTTTCTCAAGGATTCGCAAACGCTCAAATGCTA
CAACAGAGTAAGGGTAGTGCTACCGTCCGATCAAGCGCGCGTCAACGCCCCAGACTGAGGCCGGCTCATTTTCAACTTCA
TGCTTCTGCACGCTCGCCGGCCGCCACGCGCTCATCCTCGGCCACCACGCGCTCGCCCGCGCTTGACGGCTG--------
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>chr5A_1095
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------------------------------------CGCCGCGCACGCCGCGCCCGGAGATCACGCTCAAAGAGCCGTCG
TCCACGCACGAGAAGCGCGCGCCCGCGGCCGTC-------------CGCGGCCCGCCGTCACGCGCGCTCCGCGCCATCC
GCGC---------GCTGCTCCGTTCCTTCCCCATCATCGCGCCGGC----------------AGCGTGCCGCCCGGCGTC
GGCCCTACCCAGGCGCCATGGCAAGCCGCACGACGGCCACGCCGGCGGCCGCGCGCGCGTCACCGGCACCTTCTACGGCC
ACCGCCGCGCCCGCATCGCGCTCGCCGTGCAGGAGCGGCCCGGCAGCCTCCCCACCCTGGTCCTCGAGCTCGGCGTGCTC
ACGGGGAAGCTCATGCAGGAGATCTCCGCCGGGGGCCACGTCCGCATCGCCCTCGAGTGCGAGAAGAAGTCCAAGAAGTC
GCCCGACGCCGGCGAAGGCGGCGGGAGCGTCAGCCTGCTGGAGGAGGCGATGTGGACGGCCTACGTCAACGGCCGGCGCG
TCGGGTACGCGGTCAGGCGGGAGGCCACGGACGGCGACCTCGCGGTCATGCAGCTGCTGAGCACCGTGTCGGTCGGCGCC
GGCGTGCTGCC---CGGGGACGTGGTGGACGAGCCGCCCGGCGGGGCGGCGGACGCGGACGGCGAGGTGGCGTACATGCG
CGCGGGGTTCGACAGGGTCACCGGGAGCAAGGACTCGGAGTCGTTCTACATGGTCAGCCCGGACGGGGAC----------
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>SNPs
SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
------S-S-----S--------------S-----------------------S-----------------S---S----
--------S-----------------------------------------SS----------SS-S-------S------
-------S---------------------S---------------S---------S------S------------S----
----S-------------------S-----------------------------------S--------S----------
-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
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-------------------------------------------S-----------------------S------S-S--S
--------------------------------S---S----S-------------------------S--------S---
------S--SS-S-----S------S----S-------S------S----S-S---------SSSSS--S----------
-S------------S------------S-------S----------S-S------S------------------------
-S-------------------------------S---------------------------SS-----------------
------------------------------------------------------------------------S-------
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---------------------------S-----------------------------------------S----SSS---
S---------------------------S---S-----------------------------------------------
---------------------------S----------------------------------------------------
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-------------------------------------------S------------------------------------
---S---------------------------------------------------------------SSS----------
--------------------------------------------------------------------S---------S-
------------S-----S-----------------------------------------------------S-------
-----------------------------------------------------------------------------S--
------------S---------------------------------S------S--------------------------
---------------------------------------------------------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_459
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---------------------------------------AGTTTCTTCCTCGCCTCCAC---------------------
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>reverse_2730
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---------TGCTTCTGCACACTTGGTGA---------------------------------------------------
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