>input_sequence_67780
--------------------------------------------------------------------------------
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-ATGCAAGTTCCGGAA---TACTTCGTGTGCAACCCTGCG----ACCGACAAGATCTGGGCAGTGCTGCCTGCGCTTGA-
--TGTGCCAGAGCCTCAAGTTCCCTACATCTACATGGTGGGCCAACATGTAACCTGGAGCTGCAAGTTCTGTTTGTGTTT
CAACCCCGCCGTTCCCTCTCGCTTCGTGGTTTTCGCGTTCGTTGAGAGAGGCCACACCATAGTGGCAGTAAGGGTCTACT
CATCCGATACCGGAGAATGGATTTCCACAGAGAGCGGTGGCCATATCGTGGCATATGGTGGTGAACAACTATATGACTTT
TTCAATTATACCCTGTATTTCAGAGCCTAAGATCATGGAGATGGCAGGTTCTATCCCAGGGGGAGACTAATACCCTCAAT
ATTTACAGTGGACACGGACGGGGATACTTGGAGGAGAATTCCAATGCCACCCGAAGCTCATTTTTCTTTCATTGGGCACT
CTCAGGGACACTTATACGGTATGGGCATAGAGCATGTTAATGATTGCGTGCTATCGGTTTGGGCTCTCAAGGATTATCCC
AGTGGAAAGTGGACCTTAAAACATACTGCCAGCATCTTGAAACTGCTAGGAAGGTCTTATCGTGAGCTCGGTGAACAATA
TATGGTGGCTGCGGTCCATCCAGAATGTAACCTGATCTTCCTTGTTGGTTGGATGAGATCGCAAGAGACACTTATGTCGT
ATGATATGGATAGTCAGAAACTGAACGTTATCTGCACTCTTGACGATTACCACATGTCAACGCTCCGACCTTACATTCCC
TGCTTTGCGGAATGGCCGCCGTCAGATGCTCACTGA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr1A_1_TraesCS1A01G428200
AGCGGCAATG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------ATGACACATTGATAATGAAGCACATAAAATGATTTATGGGATTTCCCCATGAAAAAAC
TGTGGTTTCTCGCCCGGTAAATATTACTTGTTCGATCTTCCCCCACTCTTGACAGGTACTCAAATAAATTGATTGAAGCT
GAAAGGAAAGATTATATATATATTTTGAGAAATGAAAGGAAAAATTGTTGGACTGAA--AAAATGTACTCTTGAC-----
---------------------------------------AGAAAATGCATGTGCATCTTGGGCCGAGAGAGATTCCTCTG
T-----TATCATCAGGTCCATTTTGATGGTTATCTTTGGGCCTCCAATCCAAATACAGCACCTGTCACTCTCAAAAAAAA
AAAGTAAT-CCAAAGACAGCAGCCTCCACCACCACCAGCTCGCTCTACTCTGTTCCCCGCACTCTTGGGTTCCAGCTCG-
CCTCCACCAGTGCCGCCGCCGCCGTCTTCTCATCCGTCGCCGCCGCTCCCGTCGCGGTC--AGGTGTGAGGTTTGCTGCC
CCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATCTTCGTCCTGAGGAAGGGATCCGGGAGGAGCACATCTCAAATC
CCTA-------AACGAGCTGCCTCTACCATTCGCAGCAGCAGCAGCAGGCC-----GGGTACGGGATGGGGAAGAGGAAG
AAGGGGGAGGAGGAGGAGCA---------------GGCGGCGGAGAGGAT-CCCAGC---------------GACCTACT
CCCGGAGGTCCTGGCGCGGGTGCCGTACCGGTCCCTCTGCCGCTTCAAGTGCGTGTCCA-CGGCCTGGCTGGCGCTCTGT
TCCGACCCCGCCGTCCGCAGGAGGTCGCCGCAGACGCTCTCCGGCTTCTTCTGCTACCCGCATATCGACGGTGTCAGCGG
CCGGCGCGACGAGGGCCTCAGCTTCCTCAACCTGTCCGGGAGGGGCCGGCCGCTGGTCGAC----CCCTCTCTCCCTTTC
TTGGGGAACTACAAGAAT------GTCATTCTCCTAAACTGCTGCGCCGGCATTCTCCTCTGCCAAGGCTGGAATAGAAC
CATGCAAGTTCCGGAA---TACTTCGTGTGCAACCCTGCG----ACCGACAAGATCTGGGCAGTGCTGCCTGCGCTTGA-
--TGTGCCAGAGCCTCAAGTTCCCTACATCTACATGGTGGGCCAACATGTAACCTGGAGCTGCAAGTTCTGTTTGTGTTT
CAACCCCGCCGTTCCCTCTCGCTTCGTGGTTTTCGCGTTCGTTGAGAGAGGCCACACCATAGTGGCAGTAAGGGTCTACT
CATCCGATACCGGAGAATGGATTTCCACAGAGAGCGGTGGCCATATCGTGGCATATGGTGGTGAACAACTATATGACTTT
TTCAATTATACCCTGTATTTCAGAGCCTAAGATCATGGAGATGGCAGGTTCTATCCCAGGGGGAGACTAATACCCTCAAT
ATTTACAGTGGACACGGACGGGGATACTTGGAGGAGAATTCCAATGCCACCCGAAGCTCATTTTTCTTTCATTGGGCACT
CTCAGGGACACTTATACGGTATGGGCATAGAGCATGTTAATGATTGCGTGCTATCGGTTTGGGCTCTCAAGGATTATCCC
AGTGGAAAGTGGACCTTAAAACATACTGCCAGCATCTTGAAACTGCTAGGAAGGTCTTATCGTGAGCTCGGTGAACAATA
TATGGTGGCTGCGGTCCATCCAGAATGTAACCTGATCTTCCTTGTTGGTTGGATGAGATCGCAAGAGACACTTATGTCGT
ATGATATGGATAGTCAGAAACTGAACGTTATCTGCACTCTTGACGATTACCACATGTCAACGCTCCGACCTTACATTCCC
TGCTTTGCGGAATGGCCGCCGTCAGATGCTCACTGAATCCGAGAGCAGCTTCACATTTGCTAAGT--------TGGCATG
GCTCCTTCATGGAAACCTGTTGTTGGGTATGGTCCAGATCTTCTAGCTTTGGTCAGTGGCTTGGACAAGTCCTATGTCTG
TTCTAATTTGGCTTTCTTATCAGTTGACGTCCATTTGAATGTG-TTTTTGTGGCTTTGGAACAATGTTGGCTCGGCAGTG
AGAACTTGTAAGCGACCCTTCAATGGGTTATTTCTAGTAATATGAATGAACTAAGCCACTTAATCTCCTTGCTCTACGTA
TTAATTGTTGTAGTCACTTGTTTGTTCCTGGTGCGGGGTAAAAACAATGGGGCATCACATATGTTCGAAATTATCTGCAT
TTTCATCTCATTCTGTCCGTTTATTTAGAGCAAATACCTTTAGTGTGCAACTTGTTATCCATCAAAGTTGCATATTGATG
CCACCCTGTTTTGGTGCACTGGAAAGTGTTTT--------------TATCTCATTTCTTATTTGAAATGCTTC-TTTTTC
CTCTAATATAATACCTTGGGGTCAACTTTTTTT-GATTCCTGTGCATACTAATTGCTGCGGTCACTTGCTAGCTCTTCAT
TGGGTAAATGTGAGACAATGGGCATAATGTTTGGAATTATCTACATTTTCAGCTCTCTTTCTCTCTCTCTCTCTCT----
ATTTATTTAGAGCAATACTTTTAGTGTGCAACTTGTTATCCATCAA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ACTTTTGATGCATTTG
AAATTGTTATTCTCACTTTTCATTTGAAATGGGATCTCTTTTTGTAGTAATGTAATACCTTGGGGTTGACTTTTTATTGG
ATTGTTGTATAGACAGGGAGGTTCCTCTAGTGAAATCCGCACACATGGTGTTCCATTGATGATGTCAAAAAATATGTTCC
TTTAGTGACTTTGCTTATAGATTGCTAAAGTAAAGAAGAAATAATGAAGCCAAGTCAAATCTGGGCATGGCTAATAACTC
ATGCCATGTGGTACTTTGTGTTAGTTCAGTTTTGAGCTTTGCT
>chr1B_1
AGCGACGATGACGACACATTGATAATGAAGCACATAAAATGAATTCTGGGATTTCCCTATGAAAAAACTATAGTTTCTCA
CCTGATAAATATTACTTGTTAGATCTTGCCCCACTCTTGACAGAGACTCAAATAAATTGATTGAAGCCGAAAAAAGGAGA
GGAAAAAAATGAATAGCAAAAAAGTAAAATTGAAAAAGACATAAATTGGTTCAGGAACCTTCCCTTACCTTCTAGAAGAT
TCATAAAACCAGAAAAACCGACTGGAACCTCCTAGAACTCCTAGTTCCCAAAACCGCCGGATACTGTAGTGTGTTCTTTA
CTAATAATTGGGCCGGCCCATGTTGCTTGGTGCTGGGAACCTACGACAATCTGCCGCAGAATGCGGCAGATAGGATTTCC
GCTGCCTACGTACATGTTGTTGTAAGGCTGGCTGCTCCACATGCCCGCTGTTGGGCTGATTGTTTCGGCTTTATTTTTCG
ATAGAATGGGCCCTATAGACGAATCTATTAGTCATACACATACCTGGGCTGGGGCCTCTAAATTTTTGGGGCCCTGTGCG
GTGGCACCTGCTGCACTTGCTCAGGGCCGGCCCTGGAAGACCACATCAAACACGCTACCTTAGTCCTGTTAATACCTGGA
GAGCTTCAATTTTTACCTGTAAACATTGTGAAGGTTGAATAAAAGCTTAGCGAGAATGTCTCAAAAAAATGTTAATACTA
CTCATTTAGAAGTTAATTGATTATGTTAGTACCACTTATTTAGAAGTATCTTTTTTTTGAGTAAATTTAGAAGTTCCTTT
GTCCTGTTAATATTAGTACTTGCCAAGGTAACATATTTGTTGTGATGTTCATTTAAAAAAATAGCCACTCGGAAATGATT
TCTCATAAAAGAAAAAAAAAACATGAACCATGAATACAATGTTCATTCCATGGTAAAGATAAAGTGAAGGATAGGCCTTG
CAATCAGAAATTAGCAGCGATCATGACACATTGATAATGAAGCACATAAAATGAATTCTGGGATTTCCCCATGAAAAAAC
TGTGGTTTCTCGCCTGATAGATATTACTTGTTCGATCTTGCCCCACTCTTGACAGACACTCAAATAAATTGACTGAAGCC
GAAAGGAATTTCT---------TTTTGAGAAATGAAAGGAAAAATTATTGGACCGAAGAAAAATGTACTCTTGACTTTTT
TTTTCCAGAAACAAATGTACTCTTGACTTTTTTTTTTTGAGAAAATGCATGTGCATCTTGGGCCGAGAGATTCCTC----
------TATTATCAGATCTATTTTGATGGTTATCTTTGGGCCTCCAATCCAAATACAGCACCGCTCTCTCTCCAAAAAAA
AAAAAATT--------------CCTCCACCAGT------TCGCTCTACTCTGTTCCCCGTACACTTCGGTTCCAGCTCGC
C----------GCCGCCGCCGCCGTCTTCTCGTCCGTCGCCGCCGTTCCCGTCGCGCTCTGAGGTGTGAGGTTTGCTGCC
CTCCTCTCCC----------CTTCTTCTTCGTCTAATCTTCGGCCCGAGGAAGAGATCCGGGAGGAGCACATCTCAAATC
CCTA-------AACGAAATGCCTCTACCATTCGCAGCTGCAGCGGCAGGCC-----GTGTACGGGATGGGGAAGAGGAAG
AGACAGGAGGAGGAGGAGCA---------------AGCGCCGGCGGCAGAGCG---------------------CCTGCC
CATCGAGATCCTGTCGAGGGTG----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GTCGAC----CCCTCTCTCCCTTTC
TTGGGGAACTACGAGAAT------GCCATTCTCCTGAACTGCTGCGGCGGCATTCTCCTGTGCCAAGGCTGGAATCGGAC
CATGGAAGCTCCGGAA---TACTTCGTGTGCAACCCTGCAACCAACCGAGAAGATCTGGTCGGTGCTGCCTGCACCAGAG
CCTGTGCCGTTGCCTGGAGTTCAGACA------------------------------AGCTACAGTTTCTGTTTGTGTTC
CGACCCTGCCGCCCCCTCTCGCTTCCTCGTATTCGTGTTCGTTCAGAGAGACTATTACA---TGACAGTAAGGGTCTACT
CATCTGATACCGGAGAGTGGGCGTCCACGGCGAGCGGTCGCCGAATGGTGCCGTATGGTGGTGAAACAGTATATGACTTC
TTTAATGATGCTCTGCATTTCACTGCTTATGATCTTGGAGATGATACACC---------GGGGAAAGTAATACCATCGGT
ATTTACAGTGAGCACGGACGGGGTTACTTGGAGGAGGTTTCGAGTCCCATCTGAAGTTGAATTTTCTTTCATTGGGCAGT
CTCAGGGGCGCTTATACGGTATGGACATAGAGCAT-TTCATGATTGCTTGCTATCAGTTTGGGTGCTCGAAGATTATGCT
AGTGGACAGTGGACCTTAAAGCACACTGCTTCCATTATGGAACTGCTAGGAAGGCCTTATTGTGAGCTCGGTGAGCAATT
GATGTTGGTTGCGCTTCATCCAGAATGTAACCTGATTTTCCTTGTTGGTTGGATGAGATCGCAAGAGACACTTATGTCGT
ATGATGTGGATAGTCAGAAACTGCACGTTATCAGCAC-CTTGAAGATTACCAGATGACAACATTCCGACCTTACATTCCC
TGCTTTGCGGAATGGCTGCCGTCAGATGCTCACTGAATTCCAGAGCAGCTTCACATTTGCTAAGT--------TGGCATG
GCTCCTTCATGGAAACCTGTTGTTGGGTATGGTCCAGATCTTCTAGCTTTGTTCAGTGGCTTGGACAAGTCCTACATCTG
CTCTAATTTGGCTTTCTTATCAGTTGACGTCCAGGTGAATGTA-TTTTTGTGACTTTGGAACAATGTTGGCTAGGCAGTG
AGAACTTGTAAGCGACCCTTCAATGGGCTATTTCTAGTAATATGAATGAACTAAGCCACTTAATCTCCTTGCTCTACGTA
TTAATTGTTGTAGTCACTTGTTATTTCCTCCTGCAGGGTAAAAACAATGGGGCATCACATATGTTTGAAATTATCTGCAT
TTTCATCTCATTCTGTTCCTTTATTTAGAGCAAATACCTTTAGTGTGCAACTTGTTATCCATCAAAGTTGCATATTGATG
CCACCCTGTTTTGGTGCACTGGAAAGTGTTTCTTATTTGAAATGCATATCTCATTTCTTATTTGAAATGCTTCCTTTTTT
CTCTAATATAATACCTTGGGGTCAACTTTTTTCAGATTCCTGTGCATACTAATTCCTGTTGTCACTTGTTAGCTCTTCAT
TGGGTAAATGTGAGACAATGGGCATAATGTTTGGAATTATCTGCATTTTCAGCTCTCTCTCTCTCACTCTCTCTCTCCCC
ATTTATTTAGAGCAATACTTTTAGTGTGCAACTTGTTATCCATCAAACTTTTGATTAAATCTGAGAACAGTTTTTGATTA
ACTGGGGCCAATGGTTTGGTTGTTTGCCCTGGGCTTGATTGGTTTGGGTTGTGATGGGCCCAGACTGTTATAAGTTTAGT
TTGGTTTGGGTTTGCATAAAAACGAGTTGGGTATGGCTGGGTATGGGCCTAAATGGTGTGGTCGCTGATAGATGTGAATC
GTGGTTCAAAACCGGTTCTCGGACTGGAGGTATGCACGTGACACGCCGCGGCTGGACACACAGGTACATACGCTACGCGA
CGCGACGCGGCTGGGCACACACGTATTGAGCTGCTACTGTAGAACAATTACGTTGCTAGCTAGCTTGCTTGCCGGTTAGC
TTTGCATATACGTCAGATTGATTTGGTTTCAACCCAAAACAAAGAACCGGGTTAAGCCCATAGATCGAAGAGTGGTTTGG
TTTGGTTGAGGTCAACAGAGCATACGGTTTGGTTTAGTTTTGGTTATGCGCGATGATTGGCGGTGTGGTTTAGCTCTGGT
TCAAACTCCATATTGATTGGTTATGGTTTAGGTTTAGTTCAGTTATATGACCATTGCCAGGTTTACTTTTGATGCATTTG
AAAGTGTTATCCTCATTTTTCATTTGAAATGGTATCTCTTTTTGTAGTGGTATAATACCTTGGGGTTGACTTTTTATTGG
ATAGTTGTATAGACAGGGAGGTTCCTCTAGTGAAATCCGCATGCATGATGTTCCATTGATGATGTCAAACAATATGTTCC
TTTAGTGACTTTGCTTATAGATTGCTAAAGTAAAGAAGAAACAATCAAGCCAAGTCAAATCTGGGCATGACTATTAACTC
ATGCCATGTGTTACTTTGTGTTAATTCAGTTTTGAGCTTTGCT
>chr1D_182
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GAAAGGAAAAATTATTGGACTGAATTTTTTT---CTCCTGGC-----
---------------------------------------AGAAAATGCATGTTCATCTTGGGCCGAGTGAGGGAGAGAGA
TTCCTATATTACTAGATCCATTTTGATGGTTATCGTTGGGCCTCCAATCCAAATACATCACCTCTCTCTCTCCACAAAAA
AAAAAAAAACCAAAGACAGCAGCCTCCACCAGC------TCGC-CTACTCTGTTCCCCACACTCTA--GTTCCAGCTCGA
CCTCCACCAGTGC------------------------CGCCGCCGTTCCCGTCGCGCTCTGAGGTGTGAGGTTTGCCGCC
CGTCTCTCCC----------CTTCTTCTTCTTCTAATCTTCGGCCCGAGGAAGGGATCCGGGAGGAGCACATCTCAAATC
CCTA-------AACGAGCTGCTTCTACCATTCGCAGCAGCAGCAGCAGGCC-----GGGTACGGGATGGGGAAGAGGAAG
AAGGGGGAGGAGGAGCAGCA---------------GGCGGCGGAGAGGATCCCCAGC---------------GACCTACT
CCCGGAAGTCCTGGCGCGGGTGCCGTACCGGTCCCTCTGCCGCTTCAAGTGCGTGTCCA-CG-CCTGGCTGGCGCTCTGT
TCCGACCCCGCCGTCCGCAGGAGGTCGCCGCAGGCCATCTCCGGCTTCTTCTGCTACCCGCGTATCGACGGTGTCAGCGG
CCGGCGCGACGAGGGCCTCAGCTTCCTCAACCTGTCCGGGAGGGGCCGGCCGCTGGTCGACACACCCCTCTCTCCCTTTC
TTGGGGGACTACGAGGAG------GTCAGGCTCCTAAACTGCTGCGGCGGCATTCTCCTCTGCCAAGGCTGGAATAGAAC
CATGGAAGTTCCGGAA---TAGTTCGTGTGCAACCCTGCG----ACCGAGAAGATCTGCCTAT----------GCTTGA-
--TGTGCCAGAGCCTCAAGTTCCCTACATCTACATGGTGGCCCAACATTTAACCTGGAGCAGCAAATTCTGTTTGTGTTT
CAACCCCGCCGTTCCCTCCCGCTTTGTGGTTTTCGCGTTCGTTGAGAGAGGCCACACCATAGTGGCAGTAAGGGTCTACT
CATCCGATACCGGAGAATGGACGTCCAAGGAGAGCGGTCGCCATATTGTGGAATATGGTGGTGAACCAGTATACGACTTT
TTCGACGATACTCTGTATCTCAGAGCCTATGATCATGGAGATGACAGGTTCTATCCGAAGGGGAAACTAATACCCTCGAT
ATTTACAGTGAACACGGACGGGGATACTTGGAGGAGAATTCCAATGCCACCCCAAGTTCATTTT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------
>chr1D_427
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------GCCGCCGCCGCCGTCGTCCCGTCCGTCGCCGCAGTCCCCGTCGCGCTTTGAGGTGTGAGGTTTGTCGCC
---CTCCTCC----------CCTCTCCTTCTCCTAACCTTCGGCTCGAGTAAGG-ATCCGGGAGGGCCGCATCTCATCAA
AACCCTAAGCGAACAAACTGCCTCTACCATTCGCAGCAGGAGCAGCCCGGCCACCGGGGTACGGGATGGAGAAGAGGAAG
AAGGTGGAGGAGGACGAGGAGCAGAAGCAGCCGGCGGCGGCGGAGAGCTCCTGGGGGGCCGACCTGCTTCCGGAGATCCT
CCGGGAGATCCTGTCGCGGGTGCCGTACCGGTCGCTGTGCCGCTTCAGGTGCGTGTCCAAGG-CGTGGCTGGCGCTCTGC
TCCGACCCGGCCGTCCGCAGGAGGTCGCCGCAGACGCTCTCCGGCTTCTTCTGCTACTCCCAGCACGACGTCGGCGGCGG
CCAGCGCCGCGACGGCCTCAGCTTCCTCAACCTGTCCGGGTGGGGCCGGCCGCTGGTCGACG-ACCCCTCCCTCCTCTTC
GTGCGCGTGCGTGGCTACTGCGACGTCACGCCCCTGCACTGCTGCGGCGGCATCCTCCTCTGCTACTGCGAGAAGGTGGC
CATGAGCGACGACGGGAACTATGTCGTGTGCAACCCTGCC----ACCAAGGAGATCTGGGCCGTGCTGTCTGTGC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------
>chr1B_429
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------CGCCGCCGCCGTCGTCCCGTGCGTCGCCGCAATCCCCGTCGCGCTTTGAGGTGTGAGGTTTGTCGCC
---CTGCTCC----------CCTCTCCTTCTCCTAACCTTCGGCTCGAGGAAGGGGTCCGGGAGGACCACATCTCATCAA
AACCCTAAGCGAACAAATT-------CCATTCGCAGCAGGAGCAGCCCGGCCACCGGGGTGCGGGATGGAGAAGAGGAAG
AAGGCGGAGGAGGACGAGGAGCAGAAGCAGCCGCCGGCGGCGGAGAGCCCCTGGGGGGGCGACCTGCTCCCAGAGATCCT
CCGGGAGATCCTGTCGCGGGTGCCGTACCGGTCGCTGTGCCGCTTCAGGTGCGTGTCCACCG-CATGGCTGGCGCTCTGC
TCCGACCCGGCCGTCCGCAGGAGGTCGCCGCAGACGCTCTCCGGCTTCTTCTGCTACTCCCAGCACGACGTCGGCGGCGG
CCAGCGCCGCGACGCCCTCGGCTTCCTCAACCTGTCCGGGTGGGGCCGGCCGCTGGTCGACG-ACCCCTCCCTCCGCTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr1A_516
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TCTCCTTCCCCTAACCTTCGGCTCGAGTAAGGGATCCAGGAGGACCACATCTCATCAA
AACCCTAAGCGAACAAACTGCCTCTGCCATTCGCAGCAGGAGCAGCCCGCGCACCGGGGTACGGGATGAAGAAGAGGAAG
AAGGTGGAGGAGGACGAGGAGCAGAAGCAGCCGGCGGCGGAGGAGAGCTCCTGTGGGGTCGAACTGCTGCCGGAGATCCT
CCGGGAGATCCTGTCGCGGGTGCCGTACCGGTCGCTGTGCCGCTTCAGGTGCGTGTCGAAGG-CGTGGCTGGCGCTCTGC
TCCGACCCGGCCGTCCGCAGGAGGTCGCCGCAGACGCTCTCCGGCTTCTTCTGCTACTCCCAGCACGACGTCGGCGGCGG
CCAGCGCCGTGACGCCCTCGGCTTCCTCAACCTGTCCGGGCGGGGCCGGCCGCTGGTCGACG-ACCCCTCCCTCCGCTTC
GTGCGCGTGCGCGGCTACTGCGACGTCACGCCCCTGCACTGCTGCGGCGGCATCCTCCTCTGCTACTGCGAGAAGGCGGC
CATGAGCGACGACGGGAACTACGTCGTGTGCAACCCTGCC----ACCAAGGAGATCTGGGCCGTGCTGCC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr1D_1392
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TTACAGTGGACACGGGCGGGAATACTTGGAGGACAACTCGACAGCCGCCCCAGACTGAATTCACTTTCATTGGGCTCT
CTCAGGGACGCTTACATGGTATTGAGATGGAAGATGGTAATGGTTGCCGGATATCAGTTTGGATTCTTGAGGATTATGCT
AGTGGGCGGTGGACCTTAAAGCACACAACCAGCATTCTGGATCTGCTAGGAAGGCCTTGTCTAGAGCACAGAGAGTACTA
CGTATTTGTTGCACTCCATCCAGAACGTAACCTTATTTTTTTTAATGGCGGGCTGGAACGAGAACGGACACTTATGTCGT
ATGATATGGATACCCAGAAGTTGCATGTTATCTGCAATCTTGAAGATTATCAAATGCAAAATTTTCGACCTTACACTCCA
TGCTTTGTGGAATGGCCGCTGTCAAATGCTCACTGAAGTTCAGAGCAGGTTCACATTTGGTTAGTTGGCAACTTGGCATG
ACACCTTCATGAAAATTGGTTGTTCGGTATGGTCAAGATCTTCTAGTTTTTGGCAGTGGCTTGAATAAGGCTTACATCTA
CTCTAATTTGGTTTTCTTATCAGTTAGTGTCCAGGTGCAAGCA-TTTTTGTGGCTTT-GAACAATGTTGGCTAGGCAATG
AG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>chr1D_1448
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CATTTTTCTTTCATTGGGCACG
CTCAGGGACACTTATACGGTCTGGACATAGAGCATGTTAATGATTGCATGCTATCGGTTTGGGTTCTCAAGGATTATGCT
AGTGGAATGTGGACCTTAAAACATACTGCCAGCATCTTGAAACTGCTAGGAAGGTCTTATCGTGAGCTCGGTGAACAATA
TATGGTGGCTGCGGTCCATCCAGAATGTAACCTGATCTTCCTTGTTGGTTGGATGAGATCGCAAGAGACACTTATGTCAT
ATGATATGGATAGTCAGAAACTGCACGTTATCTGCACTCTTGACGATTACCAGATGTCAACGCTCCGACCTTACATTCCC
TGCTTTGCGGAATGGCCGCCGTCAAATGCTCATTGAATCCGAGAGCAGCTTCACATTTGCTAAGT--------TGGTGCG
GCTCCTTCATGGAAATCTGTTGTTGGGTATGGTCCAGATCTTCTAGCTTTGGTCAGTGGCTTGGACAAGTCCTATGTCTG
TTCTAATTTGGCTTTCTTATCAGTTGAAGTCCATTTGAATGTGTTTTTTGTGGCTTTGGAACAATGTTGGCTCGGCAGTG
AGAACTTGTAAGCGACCCTTCAATGGGTTATTTCTAGTAATATGAATGAACTAAGCCACTTAATCTCCTTGCTCTACGTA
TTAATTGTTGTAGCCACTTGTTTGTTCCTCGTGCGGGGTAAAAACAATGGGGCATCGCATATGTTCGAAATTATCTGCAT
TTTCATCTCATTCTGTCCGTTTATTTAGAGCAAATACCTTTAGTGTGAAACTTGTTATCCATCAAAGTTGCATATTGATG
CCACCCTGTTTTAGTGCACCGGAAAGTGTTT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>SNPs
----S-S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S--S----------------------
--------------S-S--S-------------------S---------------SS---------------S------S
--------SSSS-SSSSSSSSS------------------------S---------------------------------
-----------------------------------------------------------------------SSSS-SSSS
---------S-----S-----------------------------------------------S--S-----S-------
---SS--------------------------S-SSSSSS---------------------------S-------------
-------------------------------S-------------S----------S-----------------------
-S-S-----SSSSSSSSSSS----------------------S--S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S---------------------------------S---------------------------------
----S--------------------------------------------S------------------------------
----------------------------------------S-------S----------------S--------------
--------------------------------------------------------------------------------
---------------------SS-----S---------S-------S-------------------S-S-----------
------S----S-----------------S-------------S------------S-S-----S------------S--
--------------------------------------------------------------------------------
------------------------S----------------------S---------------S-------------S-S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S----------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S-----------------------------------------------S
--------------------------------S---------------------S---SS--------S-----------
------------------------------------------S---------------S------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S------S----S----------------S---------------SS-S----------------------------
--S--------------------------------------SS----S---------------------S----------
-----------------------------------------S---S-----------------------S---S------
----------S------------S-------------------
>forward_1534
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCTGCC
CCCTTCTTCTTCTT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>reverse_2608
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GTGCTATCGGTTTGGGCTCT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>forward_2367
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CAGAGAGCGGTGGCCATATC---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>reverse_3499
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------CGGTCACTTGCTAGCTCTTCA-
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