>input_sequence_67761
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----------------------------------------------------------------ATGGCGAAGAGCACAT
GGGCGCTCATCTGCCACCTCCACGCCATTGCAGGGTACGCCCATGCACGACAGAGCTCACGGCTCCTGAATCCTTCCGTT
TCCATCGCTTA-TATTTGGCTGTAATCTGGTGGATCATGGGCGCTTCTCTTTCCTCTGCAGGCCGAGCCTGACCCTGATA
TACCCGCTGTGAGTGGACATTCCTGCCGATCGTTGCACCTTGCATTGCTGCGGCGGTTAACTGTGGCTAGGCTATGATAT
GCTCTGTACTGGGAACGTTGGTAAAGATCTGTGGGTGTATGTGTGAGCTGTTGGTTTTGATCATCAGGTACGCGTCGATC
TGCGCGATGGAGAGCACGTCCAAGCTGGACGACGGCCAGTGGCTGGCCTACTGGATAATCTACTCCTTCATCGCCCTCTT
CGAAATGGCAGCCGAGCAAGTCCTCTACTGGTAAAATCATAGAGGGGTACTATCAAAATTGTTCATGCTCTTTCCTAGTA
GAATCCTAGCTGCGAACATTTTGCTCCGCGTGCAGAAAAGATAATTGTGTTGATCTCGCAGGATACCGCTGTGGTACGAG
GTGAAGCTGCTATTCGTGGCGTGGCTGGTGCTGCCGCAGTTCAGGGGCGCCTCCTTCATCTACGAGAAGTTCGTCAGGGA
GCAGATCAGGAAGCACGGGCTGATGCTGCACGAGCACCACGGCCACGAT------------GCCGGCCACGGGTCGCACG
TCCTCAAGGTACCGAACCTCGCC---------GAGTTTCTCTGTTGTCTTTTCGAAATAGCACATCCTCAAGAATC----
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---------TTTGCCGGACGTGCAGGCTGAGCATGGCGTGCACTGA----------------------------------
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>chr5A_1_TraesCS5A01G234100
AGGCGTAGTACAGCGGCAGGCGGAGCGAGGCGGAAGGAGGAACAAAGGACGAGAGCGGCCCGCGTATATAAGGAGGAGAC
GCCACGCAAGATAGTGATTCGTAGGTAAGCCGCGTCCACTACATCGCAAGGCCGCCTCAAAAGCGAATCTACCTGAAGGA
CCAGTGGGCCGGGCGCACGAGCAGTAAGCCCAATCGTCCTTCCTCACATCCACCCACGCCAGATCGGTTTTCTCTCCCGT
GCCAAACGCAACGAACACACGGGCATTCTGGCGCACTCAATGACAACGTCGGCCCACCGTAAAGAAGCCCCACAGGTCAG
CGAACCGAAGCCACGCACACGTACGGAAGCCCCGTAACCCCCGCACACGTAAGGACGAGACAGAGGGAGATCCCATCCGC
ACTAACTGAAATCGCACGCGTAGAACCAACCACCGGCCTCCAGCTGGCCGCGCAGCGTGCAACGCGATTGGGCAGCCGCC
TCGCTCTCGATTTACCCCGCAAAATATCTCTCGTTTTGGATGAAACCAGTGCGTACGTGGCTATATCCCAGCGAACGACC
TTAATGCACACCTAATTGTTTTGGATTTCGGCGGAATAGAAGGTCTCGGGTCTGCTTTTCGTTTCATCAC--------TA
CAGTATTCTACAT----TTCTCTCCCTTGTGTGTCTCGAATTCTTGGTTCATTTCGCAGCCTCTAGGTGTGGCTGGCTGC
CTTGTTACCTCGGT-AAAAAGCGCATCACGTGCCAACCGTAGCAAACCTCCCAT-----------GGGAAGAAGGGAAGC
AGCCACGCAACGCGATTCGAGCCCGGTTGATCTGGTGGGGCGGGCCAGGGCTCCGATCCAGCCTTGAACTCCACGTCCAA
GCTAGGCACCCGATGCCATCCCCTTCCCCGGCACCGTTAAAAACTGAGCTCGCGCTTCTCCCCGCCCCATCAACTGAATC
CCTCCCACCATCACGAGCTGTACATTTCTCATCAGGGTCGCGGTGAGTTCCTTGCCGAGCCGGGATGGCGAAGAGCACAT
GGGCGCTCATCTGCCACCTCCACGCCATTGCAGGGTACGCCCATGCACGACAGAGCTCACGGCTCCTGAATCCTTCCGTT
TCCATCGCTTA-TATTTGGCTGTAATCTGGTGGATCATGGGCGCTTCTCTTTCCTCTGCAGGCCGAGCCTGACCCTGATA
TACCCGCTGTGAGTGGACATTCCTGCCGATCGTTGCACCTTGCATTGCTGCGGCGGTTAACTGTGGCTAGGCTATGATAT
GCTCTGTACTGGGAACGTTGGTAAAGATCTGTGGGTGTATGTGTGAGCTGTTGGTTTTGATCATCAGGTACGCGTCGATC
TGCGCGATGGAGAGCACGTCCAAGCTGGACGACGGCCAGTGGCTGGCCTACTGGATAATCTACTCCTTCATCGCCCTCTT
CGAAATGGCAGCCGAGCAAGTCCTCTACTGGTAAAATCATAGAGGGGTACTATCAAAATTGTTCATGCTCTTTCCTAGTA
GAATCCTAGCTGCGAACATTTTGCTCCGCGTGCAGAAAAGATAATTGTGTTGATCTCGCAGGATACCGCTGTGGTACGAG
GTGAAGCTGCTATTCGTGGCGTGGCTGGTGCTGCCGCAGTTCAGGGGCGCCTCCTTCATCTACGAGAAGTTCGTCAGGGA
GCAGATCAGGAAGCACGGGCTGATGCTGCACGAGCACCACGGCCACGAT------------GCCGGCCACGGGTCGCACG
TCCTCAAGGTACCGAACCTCGCC---------GAGTTTCTCTGTTGTCTTTTCGAAATAGCACATCCTCAAGAATC----
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---------TTTGCCGGACGTGCAGGCTGAGCATGGCGTGCACTGAGGAGCGAACTCGCCAGGAGAATATCTGCCTGTCC
GCCGACGACGAGCCTTAACCAAACCCGCCGATCAGGGATCCCCTTCCGAGCCGGCGTAGTTGTTGATATGTGCTGTGAGA
TG-TTGGACGGAACATCGGGTTGGGGTACGATGTACTACCTTTGTTCATGAATGTAAGAAGAACTGTCAAAACGTCTTAC
ATTTTAGAAACAGAGGGTATATGTGCTAATTCGACGATGCCTTGTATATTTATAAATAA-----CGAAAGGATTCGCGTT
CTTTGCGATCAATAAATTTGTATGGTACTGGTTTCGCACATTTGGGATGGCTTATTAATTCCTCGATTTCCTAGACTAAT
TCACCAAGTTTACGGGAATTGTTCATGTATTTTAGAAATTTAGATAACTTGATCATGGTACTTTCGGAAAAGGTTCCCTG
GAAATCACAAAATTACTTTACTGTCATACACAAACATATTTTTCTAGTAGTTATCATCTAATGAATTACTTCATTGTATT
TGCAAACAAGTATTCATGACTATAAAATATGTTCGCGCATTATAGAAAACTATTATGTATTTCAGAACATTCATGTATAT
AATAAAATACTCATATTTTCAGAAAATGCGTGTGTGTTTTAGAACAAATTTTCTTCTGTACCAAAAGAATTGTTCGTATA
TGTCACAAAAAAATGTCGACAAAGGTTTTTCAGAAATAGGGAGGTACAAAGAGAAGGCAACAATACAATATTTAGTAAGA
CAAGGAAATCAAAATAGGAGATGGGAAAATGAAAATACTATCATGTAAACATAATATAAATAAAATTCATGAGATAACTT
AAAAGGATTTTCTTCTTCTTCTTCTTTTTGTTTTCACTTATTTCTCTTTTTCTTCCTGTTTTATGTCTCTTTTGTATTTT
TCTCCTGTTCAATATTGTTTCTTGACATGTTTCTTCCTTTTTGTACAAATAGCTTTTTTGAAGAAAATTATCATTTTTAT
GAATATGAGATG
>chr5B_591
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------------------------------GCGGAACAGGAGGACCCGCGTTTGTTTTTCGTTTCATCACTGTTCTACTC
CTGT----TACAT----TTCTCCCCCTTGCGTGTCTCGAATTCTTGGTTCATTTCGCAGGCTCTAGGCGTGGCTGGCT--
--TGTTGCCTCGGT-GAAAAGCGCATCACGTGGCAACCGTGGCGTGCTCCCTCCCATGGCCGAGAGGGAAGAAGGGAAGC
AGCCACGCAACGCGATTCGAGCCCGGTTGATCTGGTGGGGCGGGCCAGGGCTCCGATCCAGCCTTGAACTCCACGTCCAA
GCAAGGCACCCAATGCCATCCCCTTCTCTGGCATCGTTAAAAACTGAGCTCGCGCTTCTCCCCGCTCCATCAACCGAACC
CCA--CCAC--CACGAGCTGTACATTTCTCATCAGGGTCGCGGTGAGTTCCTTCCTGAGCCGGGATGGCGAAGAGTACAT
GGGCGCTCATCTGCCACCTCCACGCCATTGCAGGGTACGCACATGCACGACAGAGCTCACGGCTCCTGAATCCTTCCGTT
TCCATCGCTTA-T--TTGGCTATAATCTGGTGGATCATGGGCGCTTCTCTTTCCTCTGCAGGCCGAGCCTGACCCTGATA
TACCCGCTGTGAGTGCGCATTCCTGTCGATCGTTGCACCTTGCATTGCA---GCGGTTAACTGTGGCTAGGCTATGATAT
GCTCTGTACTGAGAACGTTGGT-AAGATCTGTGGGTGTATGTGTGAGATGTTGGTTTTGATCA---GGTACGCGTCGATC
TGCGCTATGGAGAGCACGTCCAAGCTGGACGACGGCCAGTGGCTGGCCTACTGGATAATCTACTCCTTCATCGCCCTCTT
CGAAATGGCAGCCGAGCAAGTCCTCTATTGGTAAAATCATAGTGGAGTACTATCAAAATTGTTCATGCTCTTTCCTAGTA
GAATCCTAGCTGTGAACATTTTGCTCCGCGTGCAGAAAAGATAAGTGTGATGATCTCGCAGGATACCGCTGTGGTACGAG
GTGAAGCTGCTATTCGTGGCGTGGCTGGTGCTGCCGCAGTTCAGGGGCGCCTCCTTCATCTACGAGAAGTTCGTCAGGGA
GCAGATCAGGAAGCACGGGGTGATGCTGCACGAGCACCATGGCCACGAT------------GCCGGCCACGGCTCGCACG
TCCTGAAGGTAATAATGAAGTTCTTACGCCGTGTTTTTCTCCGTGGTCTTTTCGAAAT-GCATGGTCGAGGACGCCTAAG
CATCTTGCGTTGCTTCACTTGATGCTTCATTTTGAGTCAATAAAATCCACACCTTGTCAAAGAAAAATGCATCTTGCGTT
GCTTTATTGTTTGCTGAACGTGCAGGCTGAGCACGGCGTGCACTGAGGAGCAAACTGGCCAGGAGAATGTCTGCCTGTCC
GCCGACGACGAGCCTTAACCAAACCCGCTGATCAGGGATCCCCTTCCGAGCCGGCGTCCTTGTTGATATATGTTGTGAGA
TG-TTGGACGGAACATCGGGTTGGGGTACCATGTACTACCTCTGTTCCTGAATGTAAGAAGAACTGTCAAAACGTCTTAC
ATTT-AAAAACAGAGGGCGGACATGATAATTAGACGATCCCTTGTATATTTATAAATAA-----CGGAAGGATTTGTGTT
CTTTGCGATCAATAAATTTGTATGGTACTGGT------------------------------------------------
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>chr5D_591
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------------------------------GCGGAACAGGAGGGCTCGCGTTTGTTTTTCGTTTCATCACTGTTCTACTA
CACTATTCTACCTTTCCTTCTCTCCCTTGTGTGTCTCGAATTCTTGGTTCATTTCGCAGCCTCTAGGCGTGGCTGGCT--
--TGTTGCCTCGGTAAAAAAGCGCATCACGTGGCAACCGTAGCGTGCTCCCTCCCATTGCCGAGAGGGAAGAAGGGAAGC
AGCCACGCAACGCGATTCGAGCCCGGTCGACCTGGTGTTGCGGGCCAGGGCTCCGATCCAGCCTTGGACTCCACGTCCAA
GCCAGGCACCCGATGCCATCCCCTTCCCCGGCACCGTTAAAAACTGAGCTCGCGCTTCTCCCCGCTCCATCAACCGAACC
CCACGCCAC--CACGAGCTGTACATTTCTCATCAGGGTCGCGGTGAGTTCCTTCCGGAGCCGGGATGGCGAAGAGCACAT
GGGCGCTCATCTGCCACCTCCACGCCATTGCCGGGTACGCGCATGCACGACACAGCTCACGCCTCCTGAATCCTTCAGTT
TCCATCATCACTTATTTGGCTATAATGTTGTGGATCATGGGCGCTTCTCTTTCCTCTGCAGGCCGAGCCTGACCCTGATA
TACCCGCTGTGAGTGGGCATTCCTGCCGATCGTTGCACCTTGCGTTGCA---GCGGTTAACTGTGGCTAGGCTATGATAT
GCTCTGTACTGAGAACGTTGGT-AAGATCTGTGGGTGTATGTGTGAGCTGTTGGTTTTGATCATCAGGTACGCGTCGATC
TGCGCGATGGAGAGCACGTCCAAGCTGGACGACGGCCAGTGGCTGGCCTACTGGATAATCTACTCCTTCATCGCCCTCTT
CGAAATGGCAGCCGAGCAAGTCCTCTACTGGTAAGA-------------------------TTCATGCTCTTTCCC----
------------TGAACATTTTGCTCCGCATGCAGAAAAGATAATCGTGTTGATCTTGCAGGATACCGCTGTGGTACGAG
CTGAAGCTGCTATTCGTGGCGTGGCTGGTGCTGCCGCAGTTCAGGGGCGCGTCCTTCATCTACGAGAAGTTCGTCCGGGA
GCAGATCAGGAAGCACGGGGTGATGCTGCACGAGCACCACGGCCACGGCCATGGTCATGACGCCGGCCACACATCGCACG
TCCTGAAGGTACTGAACCTCGCC---------GTGTTTCTCTGTTGTCTTTTCAAAATAGCATGGTAGTGGACGCTTAAG
CATCTTGCGTTGC-------------------------------------------------------------------
--TTTATTGTTTGCCGAACGTGCAGGCTGAGCATGGCGTGCACTGAGGAGCAAACGGGCCAGGAGAACGTCTGCCTGTCC
GCCGACGACGAGCCTTAACCAAACCCGCTGATCAGGGATCCCCTTCCGAGCCGGCGTCCTTGTTGATATATGTTGTGAGA
TGGTTGGACACAACATCGGGTTGGGGTACGATGTACTACCTCTCTTCCTAAATGTAAGACAAACTGCTAAAACGTCTTAC
ATTC-AAAAACAGAGGGTATACGTGCTAATTCGATGATCCCTTGTATATTTATAAATAAAATAACGAAAGGATTTGTGTT
CTTTGCGATCAATAAATTTGTATGGTGCTGGTTCCGCACATTTGGGATGCCTTATTAATTCATCGATTTCCTAGATTTAT
TCATG-AGTTTACGGGAATTGTTCATGTATTTTAGA--------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S--S---S----S--S--S-------------------------
-------------------------------------------------------------------S----------SS
SS----S-------------------------S----------SSS-SS--SSS--------------------------
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--S--------------------------------------------------------------S--------S---S-
--S-S-SS-SS------------------------------------------S-S------------------------
----------------------------------------S---------------------------------------
---------------------S----------------------------------------------------------
----------------S-------------------------------SSSS----------------------------
-----------S----------S---------------------------------------------------------
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------------------------------------------S--S----------------------------------
------------S-------------------------------------------------------------------
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-------------------S----------------------------------------------------S-------
----S-------S--------------------S----------------------------SSSS-SSSSSSSS-----
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----------------S----------------------------------S----S-----------S-----------
----------------------------S----------------------------SS----------S--S-------
-----------------------------------------S-----S--------------------------------
----S-S--------------S----------------S-----------------------------------S-S---
---------------------------------S---------------S-----------S-------------S-S--
---SSS------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_427
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-------GAAATCGCACGCGTAGAACC-----------------------------------------------------
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>reverse_2274
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---------------------------------TCGCACATTTGGGATGGCTT---------------------------
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