>input_sequence_67756
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----------------------------------------ATGGTTCGGGAGGAGGATCTTGATCTGGTGCTGGTGCCCC
TGGGACTGGCGGTGCTGGCCGGCTACCACCTGTGGCTCCTCCACGCCATCCTGCGCCACCCGACCAGCACCGTCGTCGGC
CTCAACGCCCTCGCCCGGAAGCGCTGGATCGCCGTCATGATGGCCGTCGGTACCACCGCC--CCCGAAACAATTCCCCAT
CTCTCCTTATCCCTGAG--AGCAATAATGATTCTAACTCGGCTCCCGGC-------------------CAGAACACGGAG
AAGAACGGGGTGCTGGCCGTGCAGACGCTGCGGAACAACATCATGGCGTCCACGGTGCTGGCCACGACGGCCATCACGCT
CGTCTCCGTCATCAGCGTCTTCATCGGCGCCACGGCGGGCCGCTCCCCGGCGTCGCCC------------TCGTCGTCCT
CGCCGCTGCTGGTGTACGGGAGCAAGACGGGGCGGGTGTTCGCGGTCAAGTACCTGGCCATCTCGCTCTGCTTCATGCTC
GCCTTCGTGTGCAACGTGCAGGCCATCCGGCTGTACGCGCACGCCAGCTTCCTGCTGGGCCTGCCGCCGGGAGGAGGCGA
GGA------CGGCGCGGCGGAGCAGTTCAGGGCGTACGTGGCGCGCACGGTGAACCGCGGCAGCCACGCTTGGTCGCTCG
GCCTCCGCGCCTTCTACGTGTCCCTCGCGCTCTTCATGTGGACCTTCGGCCCCATCCCGATGCTCGCCTGCAGCGTCCTC
ATGTGCGCGCTGCTCTACTTCCTCGACACCTCCGCGGACTACGCCAAGGGGATACAGCACATGCACGGCGAAGGCGGAGG
GGGCGCACGCAAAGATGGCGCCGTGTGA----------------------------------------------------
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>chr3D_1_TraesCS3D01G265700
TATCGGCCCGTCAAACTTCTGATATCTTCTCGCGAGCTCGCACAATCCCTCAAGTTGAACACTACCTGCCCCGTGAGTCA
CTATCCACGTGCAACTTTTTTTTTTCTCTGGT------------------CAATATGAAGAGATTAATGGTATGTC-ACA
TTTTGTGAATGATGGTTGCTTCTCTTGATTGCTTTGCAGGCTGTACTGCAAAAGCTGCTTGACCGTGAAAGATATATGTA
GAAG---TTCCTGTGTGTTTGCTGAAATTGTGACGCTGCTTCAGTGGTTCCTAAGTA-GTAATGGTTTAGAAAGCTGCAA
AATTACAAACTTGAACGCGTAGACTGATGCAACAATGATCTTGCCAGCCGTTCGCAAGTTTGGTTCTCGATCTTCTTTAG
CAGCGATCATGTGAGGTAGTAGTGGACTAGTGGGTGCTTCATCAGTTGCTGCTGAT--GGGATGTGAACATGTAAAAATT
GCAGCAAACTTGGCCGTTAAGTGAGATCGCTTCATTGCTGAAAGAAAAAAAAACTTTCGTTTTAGTATCTATCACCTCAT
TCCTGTGGGTCATGTCTTACCTAT----TTTTTGTAAGATCACATGATGATCATGAAACCACCTTACATCAAACTTGGCC
GTAAAGTGAGATCGCTGAAGCTGGT---GAATGTGGAATTTATTCCAAAGTAATTACCACCGCCACTTAGTTGGGTGCGT
GCTGGCGAAGAGTCCAAGTTCAACCAGCACTGCGCCAGCAAAGGTGTAGTACGT-------GGGTCGATCCAGGGACCCG
CACCTGTCAAGCTGCGAAGTCGAGAGCAACTAAACTACGCATGCTATGTCATATC---CAAGGCATCCGGAGGCGTGATC
GCGATT------------CGCTGGGGAATCGCTTCGCTCGTGACCCCTGGCGAGGTTGCTTCCTTCCTTTCTTTGGTGGC
AG--CATTCGTGCTACCCTACCCGGTACAAAGGTATTTGGTTCTGTTCTGATTCCAGCTCGGAAGAAACAGAGAGATTGT
GCAGTGAGATGAAG------------------------CAATGGTTCGGGAGGAGGATCTTGATCTGGTGCTGGTGCCCC
TGGGACTGGCGGTGCTGGCCGGCTACCACCTGTGGCTCCTCCACGCCATCCTGCGCCACCCGACCAGCACCGTCGTCGGC
CTCAACGCCCTCGCCCGGAAGCGCTGGATCGCCGTCATGATGGCCGTCGGTACCACCGCC--CCCGAAACAATTCCCCAT
CTCTCCTTATCCCTGAG--AGCAATAATGATTCTAACTCGGCTCCCGGC-------------------CAGAACACGGAG
AAGAACGGGGTGCTGGCCGTGCAGACGCTGCGGAACAACATCATGGCGTCCACGGTGCTGGCCACGACGGCCATCACGCT
CGTCTCCGTCATCAGCGTCTTCATCGGCGCCACGGCGGGCCGCTCCCCGGCGTCGCCC------------TCGTCGTCCT
CGCCGCTGCTGGTGTACGGGAGCAAGACGGGGCGGGTGTTCGCGGTCAAGTACCTGGCCATCTCGCTCTGCTTCATGCTC
GCCTTCGTGTGCAACGTGCAGGCCATCCGGCTGTACGCGCACGCCAGCTTCCTGCTGGGCCTGCCGCCGGGAGGAGGCGA
GGA------CGGCGCGGCGGAGCAGTTCAGGGCGTACGTGGCGCGCACGGTGAACCGCGGCAGCCACGCTTGGTCGCTCG
GCCTCCGCGCCTTCTACGTGTCCCTCGCGCTCTTCATGTGGACCTTCGGCCCCATCCCGATGCTCGCCTGCAGCGTCCTC
ATGTGCGCGCTGCTCTACTTCCTCGACACCTCCGCGGACTACGCCAAGGGGATACAGCACATGCACGGCGAAGGCGGAGG
GGGCGCACGCAAAGATGGCGCCGTGTGAGCTTTGCCGCGTCGGGTCTCGGGTGTCCGGCCAAAACGAACTCGGGAGACGA
---TGTGATGATCTTTTGCTGAGTT---GTACAGTGATCAGTGGTAGAAACGACGACATACAGCAGGAAGTGGGTAGTGA
GCAGGTTTCCGTGCCCCCCATGTGGACTTACCGCGCATGATTTATTGCCGGATTACTTTACTTTTCTGTTGGGAAACCGG
CCGCACGGGATAGCCCCTTCCGGTTCTACACATTAAGAGCCTGTTTGGGACTGCTCTGCTTCTTAAAATTCAGCTCCGCT
TTAAAAAATGCAAGCCAAACGGGGTAGCTCCACGATATGCCGCTCCACAAAAAAACTAGAATCTGGGGCACAACTTCTAG
TTTTTTATGAAGCTCTTCAGGGGGTGCTCCAAAAAACTCTAGAAGCTGGAGTTGGGTGAAAATTACCCACCACTGCCACC
AGTAAGTGGATACCCCTTCGTTTCTCCCCCCTCGAGCAATCAAATAGATCCTTTCCATCAAATTTCTCATTCTTGAAGCT
GGAGCTAGATGAAAGCCAAACATTCTCTTTGGTATTGCTACAACTTCTGGATGAAACTGCTCCAAAGTGAATTTAGTGGA
GCGAAACTGATTTTGGTGAAGTGGAGCAGTCCCAAACAAGCCCTAAGTGCGTACTTATCTCTTAACCCCCTACTCCTATA
AAGAGATGAGAAGTAATCATTGTAACAGTTAATCACTGATTAATAAAGATAGTCTTCTCCATACTTTCCTGCGTTCATCT
ACTTTTACGTGTTCGACTACTTCGTCTACGACGCTCGCTCTCGCTCCCCAACCTCGGACCGGACTCGCTGGCGGAGTTGC
GGAACACGTTATCAACACGCTTCGCTCCACCAACTCTGCATCAAGCAGGCTTTCGTCGTTCACGCGGAGGTATAAGATCC
GATCTCCCTTTTGCAAAAAGGATTCCTCATGTTATCACGATTTCGTTTTTGCGATTAGTCTATTTTTCGGATTT
>chr3A_1
TATCGGCCTGTCAAACTTCTGATATCTTCTCGCGAGCTCGCACAGTCGCTCAAGTTAAACACTACCTGCCCCGTGAGTCC
CTGTCCCCATGCAACTATTTATCTCTGATCCGCTTGGCATTCGTTATTCAAACTATGAAGAGATTAATGGGCTGTC-ACA
TTTTGTGAATGATGGTGT-TTCTATTGGTTGCTTTGCAGGCTGTGCTGCAAAAGCTGCTTGACCGTGAAAGATATATGTA
GAAG---TTCCTATGTGTTTGCGTAAACTGTGACGCTGTTTCGGTGGTTCCTAAGTACGTAATGGTTTAGAAAGCTGCAC
AATTACAAACTTGAACGCGTAGACTGATGCAACAATGACTTGGCCAGTCGTTGGCAAGTATGGTTCTCGATTTTTG--AG
CAGCGATCATGTGAGGTAGTAGTGG--------GTGCTTGATCAATTGCTGCTGAT--GGGATGTGAACATGT-AAAATT
GCAGCAAACTTGGCCGTTAAGTGAGATCGCGTCATTGCTGAAAAAGAAAAGA----TTTTGTTT-TATCTATCACTCCAT
TCATGTGGGTCATGATGTCCTACCTATATTTTTGTAAGATCACATGATGATCATGAAACCACCTG-CATCAAACTTGGCT
GTAAAGTGAGATCTCTGAAGCTGGTTGTGAATGTGGAATTTATTCCAAAGTAATTACCACCGCCACTTACTT-GGTGCGT
GCTGGCGAAGAGTTCAAGTTGAACCAGCACTGCGCCAGCAAAGGTGTAGTACGT-------GGGTCGATCCAGGCGCTCG
CACCTGTCAAGCTGCGAAGTCGAGGGCAACTGAGCCACGCATACTATATCATATCCATCAAGGCATCCGGAGGCGTGATC
GCGAATTCGCGATTCGCCCGCCGGGGAATCTCTTCGCTCGTAACCCCTGGCGAGGTTGCTTCCTTCCTTTCTTTGGTGGC
GGTATATTCGTGCTACCCTACCCGGTACATAGGTATTTCGTTCTGTTCTGATTCCAGCTCAGAAGAGACAGAGAGATTGT
GCGGAGAAGAAGAA---GCAGAGAGAGGATCGAGGCGACAATGGTTCGGGAGGAGGATCTTGATCTGGTGCTGGTGCCCC
TGGGGCTGGCGGTGCTGGCCGGCTACCACCTGTGGCTCCTCCACGCCATCCTGCGCCACCCGACCCGCACCGTCGTCGGC
CTCAACGCCCTCGCCCGGAAGCGCTGGATCGCCGTCATGATGGCCGTCGGTACCACCGCCGCCCCCCAAAAATTCCCCAT
CTCCCCTT--------G--AGCGATAACGATTCTAACCCGGCCCCCCGCCGTTTCTCGGAGCGCGGAGCAGAACACGGAG
AAGAACGGGGTGCTGGCCGTGCAGACGCTGCGGAACAACATCATGGCGTCCACGGTGCTGGCCACGACGGCCATCACGCT
CGTCTCCGTCATCAGCGTCTTCATCGGCGCCACGGCGGGCCGCTCCCCGGCGGCGCCC------------TCGTCGTC--
-GCCGCTGCTGGTGTACGGGAGCAAGACGGGGCAGGTGTTCGCGGTCAAGTACCTGGCCATCTCGCTCTGCTTCATGCTC
GCCTTCGTGTGCAACGTGCAGGCCATCCGGCTGTACGCGCACGCCAGCTTCCTGCTGGGCCTGCCGCCCGGGGGAGGCGA
GGACGGCGGCGGCGCGGCCGAGCAGTTCAGGGCGTACGTGGCGCGCACGGTGAACCGCGGCAGCCACGCCTGGTCGCTCG
GCCTCCGCGCCTTCTACGTCTCGCTCGCGCTCTTCATGTGGACCTTCGGCCCCATCCCGATGCTCGCCTGCAGCGTCCTC
ATGTGCGCGCTGCTCTACTTCCTCGACACCTCCGCGGACTATGCCAAGGGGATACAGCACATGCACGGCGAAGGTGGAGG
GGGCACACGCAAAGACGGCGCCGTGTGAGCTCTGGCGCATCGAGC-----GTGTCCGGCCAAAACAAACTCGGGAGACGA
CGATGTGATAATCCTCTGCTGAGTTTTGGTACAGAGAGCAGTGGTAGAAACGACGACATACAGCAGGAAGTGGGTAATGA
GCAGGTTTCCGTGCCCCC-ATGTGGACTTACCGCGCATGATTTATAGCCGGATTACTTTACTTGTTTCTGT---------
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>chr3B_1
TATCGGCCTGTCAAACTTCTGATATCTTCTCGCGAGCTCGCACAATCCCTCAAGTTAAACACTACCTGCCCCGT------
------ACGTGCAACTATTTATCTCTGTTCTGCCTGGCATTGCTTATTCACAACATGCAGAGATTAATGGGCTGTCCACA
TTTTGCGAATGATGGTGT-TTCTCTTGATTGCTTTGCAGGCTGTACTGCAAAAGCTGCTTGACCGTGAAAGATATATGTA
GAAGAGGTTCCTATGTGTTTGCTG-AACTGTGACGCCGTTTCAGTGGTTC--AAGTA-GTAATGGTTTAGAAAGCTGCAA
AATTACAAACTTGGACGTGTAGACTGATGCAGCAGTGACTTGGCCAGTCG---------------------TTTTG--AG
CAGCGATCATGTGAGGTAGTGGGT---------GTGCTTCATCAATTGCTGCGGATGGGGGATGTGAACATGT-AAAATT
GCAGCAAACTTGGTCGTTAAGCGAGATCGCTTCATTGCTGAAAGAAAAAAAAAAGCTTTCGTTT-TATCTATCACTTCAT
TAATGTGGGTCATGCCCTACCTAT----TTTTTGTAAGATCACATGATGATCATGAAACCACCT-ACATCAAACTTGGCC
GTAAAGTGAGATCGCTGAAGCTGGT---GAATGTGGAATTTATTCCAAAGTAATTACCACCGCCACTTTGTTGGGTGCGT
GCTGGCGACGAGTCCAAGTTGAACCAGCACTGCGCCAGCAAAGGTGTAGTACGTGCCACGTGGGTCGATCCAGGCACTCG
CACCTGTCAAGCTGCGAAGTCGAGAGCAACTGAACCACGCATGCTATGTCATGTCCATCGAGGCATCCGGAGGCGTGATC
GCTATT------------CGCCGGGGAATCGCTTCGCTCGTGACCCCTGGCGAGGTTGCTTCCTTCCTTCCTTTGGTGGT
AG--TATTCGTGCTACCCGGTA--GTACAAAGGTATTTCGTTCTGTTCTGATTCCAGCTCAGAAGAGACAGAGAGATTGT
GCGGAGAAGAAGAAGAAGCAAAGAGAGGATCGAGC---CAATGGTTCGGGAGGAGGATCTTGATCTGGTGCTGGTGCCCC
TGGGGCTGGCGGTGCTGGCCGGCTACCACCTGTGGCTCCTCCACGCCATCCTGCGCCACCCGACCCGCACCGTCGTCGGC
CTCAACGCCCTCGCCCGGAAGCGCTGGATCGCCGTCATGATGGCCGTCGGTACCACCACCGCCCC-AAAAAATTCCCCAT
CTCCCCTT--------GTGAGCAATAACGATTCTAACTCGGCTCACGGCCGTTTCTCTGAGCGCGGATCAGAACACGGAG
AAGAACGGGGTGCTGGCCGTGCAGACGCTGCGGAACAACATCATGGCGTCCACGGTGCTGGCCACGACGGCCATCACGCT
CGTCTCCGTCATCAGCGTCTTCATCGGCGCCACGGCGGGCCGCTCCCCGGCGGCGCCCTCGCCCTCCTCGTCGTCGTC--
-GCCGCTGCTGGTGTACGGGAGCAAGACGGGGCGGGTGTTCGCGGTCAAGTACCTGGCCATCTCGCTCTGCTTCATGCTC
GCCTTCGTGTGCAACGTGCAGGCCATCCGGCTGTACGCGCACGCCAGCTTCCTGCTGGGCCTGCCGCCGGGGGGAGACGA
GGACGACGGCGGCGCGGCGGAGCAGTTCAGGGCGTACGTGGCGCGCACGGTGAACCGCGGCAGCCACGCCTGGTCGCTCG
GCCTCCGCGCCTTCTACGTGTCCCTCGCGCTCTTCATGTGGACCTTCGGCCCCATCCCGATGCTCGCCTGCAGCGTCCTC
ATGTGCGCGCTGCTCTACTTCCTCGACACCTCCGCGGACTACGCCAAGGGGATACAGCACATGCACGGCGAAGGCGAAAG
GGGCGCCCGCAAAGATGGCGCCGTGTGAGCTTTGCCGCATCGAGA-----GTGTCCGGACGAAACAAACTCGGGAGACGA
---TGTGATGATCTTTTGCTGAGTT--GGTACAGAGATCAGTGGTAGAAACGACGACATGCAGCAGGAAGTGGGTAGTGA
GCAGGTTTCCGTGCCCCC-GTGTGGACTTACCGCGCATGATTTATAGCCGGATTACATTACTTGTTTCTGT---------
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>SNPs
--------S-----------------------------------------------S----------------------S
--S-------------S---S-S-SSSS-SSS--------------------------------------SS--------
----------------SSS-------------------------------------------------------------
------------S--------------S----------S-----------------------------------------
--------------------------------------SS-S-----S----S------S-----------S--SSSS--
-------------------------SSSSSSSS-----------S----------------------------S------
-----------------------------------------------------SSS-SS-S--SS----------S----
--S-----------S-S-----------------------------------------------S---------------
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--------------------S-----------------------------------------------------S--S--
-------------------------------S---S--------------------------------------------
---------------------S----------------------------------------------------------
----S---------------------------------S---------------------S-----S-------------
--S-S--SSSSS-S------------------------------------------------------------------
----S------------------------------------------------------------S--------------
-----------------------------------------------------------------S---S----------
---S----SSSSSSSS-----------S----------------------------------------------------
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----------------------------------------------------S-------------------------SS
S-------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
---------------------------------------------------------------------S----------
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--------------------------------------S---S-SSSSSS---------------S--------------
----------------------------------S---------------------------------------------
------------------S--------------------------S-----------------S-S-S-SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_279
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-------------------TGCTGAAATTGTGACGCTGC-----------------------------------------
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>reverse_2261
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--------------------GGGGTAGCTCCACGATATGC----------------------------------------
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