>input_sequence_67712
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-----------------------------ATGGAGGCAGACGCAAGCCATGCACCCACCACCTCTTCCTCCTCCGTCTCG
TCGTCGACATTGTCCACCTCCTCCTCCTCCTCCTCCCTCGCCACCAGTGTGCTAGAGCTCCCCAAGAACCCCAAGCCCAA
GCACCCGAAGAAACGCAAGAGAGCCGCCGCCGACCAAGAAACGGACGCCGCCGCGGCCACCATTGGCGCACGAGGAGACG
AGAGCAGCTGCTGCAGCACCGACGAAGACAA---CGCCGCGAGCGTCAAGGCAGCCGTGTCCAAGAGCGGCTTCAAGCAC
CCGTCGTACCGCGGCGTGCGGCGCCGGAGCTGGGGTAAGTGGGTGTCCGAGATCCGTGAGCCGCGCAAGAAGTCGCGCAT
CTGGCTCGGCACCTTCCCCACCGCGGAGATGGCGGCGCGAGCCCACGACGTGGCCGCGCTCGCCATCAAGGGCCGCTCCG
CGCACCTCAACTTCCCGGAGCTCGCCCACGAGCTGCCCCGCCCGGACTCCACGTCGCCCGCGGACATCCAGGCCGCCGCC
GCGAAGGCCGCCGCCACCGCCGCCGTGCAGTGCGAGGCCGAGCCGGAGCACGAGCACGAGCCCGAGACGCCGTCGTCG--
-TCCGGCGCCGTTTCGGAGACACCGGAGGCTGCAGCCTGCACCGAAGCGGTGCCCGCGGACAGCGGCGAGGTCGACAATG
CGCTGTTCGACCTGCCCGACCTTCTTCTGGACCTGAGGGATGGGCTCTTCTGGTCGCCGGTCTGGCCGGTGGCGCTGGCC
GCCGAGGAGTACGACGGGGGCTGCTGCGTTGGGCTCAGTGAGCCTCTCTTGTGGGCCGAGTAG-----------------
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>chr2B_1_TraesCS2B01G434300
ATATTAACAGGAATACATAGTCGTCACCGGTAATTTTGGTTACATCTAACGGGCAAAATAAGTTGGTACAGGGGTTTAGT
CTCCCGTCGATGGTGTATGATTCTGTGGTAGTGTAAACTCTATTTGTTCCCTTAAAAAAAACTCTATTTTGTAAGGACTA
TACTGATTATAGAGACTTTTAAAGGAACACATCATGGTAGAGTTTTGATTGTTAGGATTTCCGTATAAGATCTCAATTAG
TTTCCGATCCCTAGATTCCTGGCCTCAACCCTACCCC----GGATATCACCTTCGTGCTATCATTATCCAATCAAGTTTA
AGGGGGCTCCGATGAACCCCAATACAACCCAGTCTGAACGATGATGCGGGGGAGGAGGAGAACAAGCTTGCCGGAGCAGA
ATCTACAAGCAAATGGTGACACAATAAATCCGAATCAGACGTGTTACCTAACTGGCATTGGTTCACATGGTGTTTCAATG
G----------------------------TTAGTAATTCCATTCTGTTGAATATAAAC--CAGTTGATTGTAGCATGGTT
TAAATACGGTTCAGTGACCTCCCATTTTAATTGACCAATTGACTGCATCCTGCACATGAATAAAGTTCAGTGGCCTCTGA
TTTTA-TTGACCAATTGACTGCATCCAGCACATGAATAAAACTTTTCCTACTTGCATGCATATATACTAGTACTACTTCT
CTTTGCAAAAACAA-----TATGAGATTGCTTTATTTTGTGTAAATAAACATTAATTAAAAGGCGAAACATTTGCTCCTA
CCAATTCTTCTTTCCTCAATCCTCACTTCACCTTGTTTATTAAAATAAAAAAATT-------------------------
--GTGAATAGTACTAACACGTTGAAAAAGAAAGGAAAACAAACAAAACGCTTTACTCAATGGCCCCAGCGAGAGGCCAAA
GAAGAAGCCACCGCTATATATACGGCCGAAGGCGCTCTCTACTCCTC--AGTCCCCACGCTTCTTGTAGTCCACCTAGCT
ACAGGCCTTCAGATCCCTCCTAACGAGCCATGGAGGCAGACGCAAGCCATGCACCCACCACCTCTTCCTCCTCCGTCTCG
TCGTCGACATTGTCCACCTCCTCCTCCTCCTCCTCCCTCGCCACCAGTGTGCTAGAGCTCCCCAAGAACCCCAAGCCCAA
GCACCCGAAGAAACGCAAGAGAGCCGCCGCCGACCAAGAAACGGACGCCGCCGCGGCCACCATTGGCGCACGAGGAGACG
AGAGCAGCTGCTGCAGCACCGACGAAGACAA---CGCCGCGAGCGTCAAGGCAGCCGTGTCCAAGAGCGGCTTCAAGCAC
CCGTCGTACCGCGGCGTGCGGCGCCGGAGCTGGGGTAAGTGGGTGTCCGAGATCCGTGAGCCGCGCAAGAAGTCGCGCAT
CTGGCTCGGCACCTTCCCCACCGCGGAGATGGCGGCGCGAGCCCACGACGTGGCCGCGCTCGCCATCAAGGGCCGCTCCG
CGCACCTCAACTTCCCGGAGCTCGCCCACGAGCTGCCCCGCCCGGACTCCACGTCGCCCGCGGACATCCAGGCCGCCGCC
GCGAAGGCCGCCGCCACCGCCGCCGTGCAGTGCGAGGCCGAGCCGGAGCACGAGCACGAGCCCGAGACGCCGTCGTCG--
-TCCGGCGCCGTTTCGGAGACACCGGAGGCTGCAGCCTGCACCGAAGCGGTGCCCGCGGACAGCGGCGAGGTCGACAATG
CGCTGTTCGACCTGCCCGACCTTCTTCTGGACCTGAGGGATGGGCTCTTCTGGTCGCCGGTCTGGCCGGTGGCGCTGGCC
GCCGAGGAGTACGACGGGGGCTGCTGCGTTGGGCTCAGTGAGCCTCTCTTGTGGGCCGAGTAGGAATATATTCTTCAGTT
TTTACCGTTCTGGGCTCATGAATTGCTTTGCTAGTGTACTAGTAGTATGGCAAGGTTGGCTAAAAAAAAGTAGTATGGCA
AGGATAAAAGATTTAGTGGTAGCAGTAGCACTGCTATTGGAAAAAAGTTATCGTCAGCTGTTTGTGAGTCTTCTTCACTC
GTCCATGAAACATGTGTGC-TTTTTTTTATTGCTATCAACAAAAGAAGCTTTGCCAGGCAGGATGGACTTCCCTGGAAAA
GAAGACACAGGTTTACTCTACAAGTTTGCAAATGCTTTAGATGATTGCTCAGTTGATGGACACTCCT------A----CA
TGGTGGGCCGCCGTTTAGTGGCAGCT---AGCAGTTAATTAACTCGATGCGTT-GCAATTATGTTTTGTCAGTT--TGAT
GATATTCATATGGTGATGGCCTGGTGGGCTGCCGGCCGGATTTA--------------------------TA--------
-CAAGCAAAAATAAAAAATCCAAA---------------TTCCTTCCTGATTTCACAAACGAGTTTGGCAGTAAGGAATG
GACTCTTGTGT---TAGCGTGTTATACTGCCCCACTCTC-CAGCAGAAGTGCACTTTTAACGAACAAACTCCCTAATTTC
CATAGAGCTCTGACTTTACTCTTACTCTTGCTGCTTTTTTTTTTTTTTTGCATGGTTACTCTTGCTGCTCTTACGTCGCT
ATTATGAGAGGATCTCTAGAAATACGGAGGGGAAAATCTT------ATACTAGTACTC----CAATGCCAACATGGCCTT
T-TAATTACATGCGGCTTATTCAACTGCTCCGTAGGTGAAGTACTGAGCTGTAG----TCATATCTTTGCTGGGTTTGGT
ACAAGACCCACGTTATCCTAGGTTACAATAAAGGGAGCCCAGTCCAGAGGCGGAAAGA---------------GGAGAAA
AAACAAACAAGATGGAAGGGTCAAAGAAAGTTCCAACTCTGAGCGCACATCATTCCCTTGTCTCCTAGCAGCGGAGGTCA
G------------TTAAAAACGCGAAGCCAATGACTACTAGGTTAGGAGTTAGGTA
>chr2D_142
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-------------------------------------------------------------CTCTATTTTGTAAGGACTA
TATTGATTAGAGACCTTTATAGGAA-----ACCATGGTAGAGTTTTGCTCAATAGGATTTTCATAAAAGATCTCAATTAG
TTTCCGAGTCTAGATCC-----CCTCAACCCTA-----CCGGGATATCACCTTCATGCTATCACTATCCAATCAAGTTCA
AGGGGGCTCCGATGAACCCCAATACTACCCAATCTGA-CGATGATGCCCGGGAGGAGGAGAACAAGCTTGCCGTAGCAGA
TTCTACAAGCAAATAGTGTCATAATAAATCCGAATCAGACGTGTTACCTAACTGGCATTGGTTCACATGCTGTTTCAATG
G----------------------------TTAGAAATTTCATTCTGCTTAG--TAAAC--CAGTTGATTGTAGCATGATT
TAAATACAGTTCAGTGACCTCTGATTTTAATTGACCAATTGACTGCACCCAGCACATGAATAAAGTTCAGTGGCCTCTGA
TTTTAATTGACCAATTGACTGCATCCAGCACATGAATAAAACTTTTCCTACTTGCATGCATATATACT---------TCT
CTTTGCAAAAACAT-----TATGAGATTGCTTTATTTTGTGTAAATAAACATTAATTAAAAGGCGAAACATTTGCTCCTA
CCAATTCTTCTTTCCTCAATCCTCACTTCACCTTGTTTGTTTAATAAATAAATAAAATCGTGAATAGTATCCTCAAAAAA
TCGTGAATAGTACTAGCACGTTGAAAAAGAAAGGAAAACAAACGAAACGCTCTACTCAATGGCCCCAGCCAGAGGCCAAA
GAAGAAGCCACCCCTATATATACGGCCGAAGGCACTCTCTACTCCCCCAAGTCCCCACGCTTCTTCTAGTCCACCTAGCT
ACAGGCCTTCAGATCCCTGCTGCCGAGCCATGGAGGCAGACGCGAGCCATGCACCCACCACCTCTTCCTCCTCCGTCTCG
TCGTCGACATTGTCCACCTCCTCCTCCTCCTCCTCCCTCGCCACCAGCGTGCTAGAGCTCCCCAAGAACCCCAAGCCCAA
GCACCCGAAGAAGCGCAAGAGAGCCGCCGCCGACCAAGAACCGGACGCCGCCGCGGCCACCAATGGCGCCCGAGGAGACG
AGAGCAGCTGCTGCAGCACCGACGAAGACCA---CGCCGCGAGCGTCAAGGCAGCCGTGTCCAAGAGCGGCTTCAAGCAC
CCGTCGTACCGCGGCGTGCGGCGCCGGAGCTGGGGCAAGTGGGTGTCCGAGATCCGCGAGCCGCGCAAGAAGTCGCGCAT
CTGGCTCGGCACCTTCCCCACCGCGGAGATGGCGGCGCGCGCCCACGACGTGGCCGCGCTCGCCATCAAAGGCCGCTCCG
CGCACCTCAACTTCCCGGAGCTCGCCCACGAGCTGCCCCGCCCGGACTCCACGTCGCCCGCGGACATCCAGGCCGCCGCC
GCGAAGGCCGCCGCCACCGCCGCCGTGCAGTGCGAGGCCGAGGCCGAGCACGAGCCCGAGACGC---------CGTCGTC
CTCCGGCGCCGTCTCGGAGTCACCGGAGCCTGCCGCCTGCGCCGAAGCGGTGCCCGCGGACAGCGGCGAGGTCGACAATG
CGCTGTTCGACCTGCCCGACCTTCTTCTGGACCTGAGGGACGGGCTCTTCTGGTCGCCGGTCTGGCCGGCGGCGCTGGCC
GCCGAGGAGTACGACGGCGGCTGCTGCGTCGGGCTCAGCGAGCCACTCTTGTGGGCCGAGTAGGAGTGTTTTTTTTACTG
TAC-----------CTCATGAATTGCTTAGCAAGGATA------------------------------------------
-----AAAAGATTTAGTGGTAGCGGTAGCACTGCTATTGGAAAAAAGTTATCGTCAGCTGTTTGTGAGTCTTCTTCACTC
GTCCATGAAACATGTGTGC-TTTTTTTTATTGCTATCAACAAAAGAAGCTTTGCCAGACACGATGGACTTCCCTGGAAAA
GAAGACGCAGGTTTACTCTACAAGTTTGCAATTGCTTTAGATGATTGCTCAGTTGATGGACACTCCTGCATCTA----CA
TGGTGGGCCGCCGTTTACTGGTAGCTGTTAGAAGTTAATGAGCTCGATGCGTTTGCAATTATTTTTCTTATTTTGATGGT
GATATTCATATGCTGTT-GCCTGGTGAGTTGCCGGCCGGTTGGAAGTCGTTTTATGGCCGGTGAAACAGCTA--------
-CAAGCAAGAAAATCAAACCAGAGCGAACTGTGGACTGTTTCCTTGCTGGTTTCACAAACGAGTTTGGCAGTGAGGAATG
GAGTCTTGTGT---TAGCGTGTTATACTGCCTCACTCTAACAGCAGAGGTGCACTTTTAACGAACAAACAACCTAATTTC
CACAGAGCTCTGACTTC----------------------------------------ACTCTTGCTGCTCTTACGTCGCC
ATTATGAGAGGATCTCTAGAATTACGGAGGGGGGAAATCTTACACAC------TACTC----CAATGCCAACATGGCCTT
T-TAATTACCTGCGGCTTATTTAACTGCTCCGTAGGTGAAGTACTGAGCTGTAGAAGGTCATATCTTTGCTGGGTTTGGT
ACAAGACCCACGTTATCCTAGGTTACAATAAAGGGAGCCCAGTCCAGAGGCGGAAAGA---------------GGAGAAA
AAACAAAGGAGATGGAAGGATCAAAGAAAGTTCCAACCCTGAGCGCACATCATTCCCTTGTCTCCTAGCAGCGGAGGTTA
G------------TTAAAAACGCAAAGCCAATGACAACCAGGTTAGGAGTTAGGTA
>chr2A_142
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-------------------------------------------------------------CTCTATTTTGTAAGGATTA
TATTGATTAGAGACGTTTACAGAAA-----ATCATGGTAGAGTTTTGTTCATTAGGATTTCCATAAAAGATCTCAATTAG
CTTCCGAGTCTAGATCC-----CCTCAACCCTACCCTACCGGGATATCACCTTCATGCTATCACCATCCAATCAAGTTTA
AGGGGGCTCCGATGAACCCCAATACTAGCCAATCTGA-CGATGATGCCGGGGAGGAGGAGAACAAGCTCGCCGTAGCAGA
ATCTACAAGCAAATAGTGCCACAATAAATCCGAATCAGACGTGTTACCTAACTGGCATTGGTTCACATGCCGTTTCAATG
GTTAGTAAAAAAGTAAAATTGCGAGGGGGTTAGTAATTCCACTCTGTTGAAATATAAACGCAGTTGATTGTAGCATGGTT
TAAATACAGTCCAGTGACCTCTCATTTTAATTGACCAATTGACCGCATCCTGCACATGAAA-------------------
-------------------------------------AAAACTTTTCATTCTTGCAGTTGCAGGCAGATA---TACTTCT
CTTTGCAAAAACATTACTGTATGAGATTGCTTTATTTTGTGTAAATAAAGATTATTTAAA-GGTGAAACATTTGTTCCTA
CCAATTCTTCTTTCCTCAATCCTCACTTCACTTTGTTTATTTAATTATTAAT----------------------AAAAAA
TCGTGAATAGTACTAACACGTTGAAAAAGAAAGGAAAACAAACGAAACGCTTTACTCAATGGCCCCAGCCAGAGGCGGAA
GAAGAAGCCACCCCTATATATACGGCCCAAGGCGCTCTCTACTCCCCCAAGTCCCCACGCTTCTTGTAGTCCACCTAGCT
ACAGGCCCTCAGATCCCTGCTACCGAGCCATGGAGGCAGACGCGAGCCATGCACCCACCACCTCTTCCTCCTCCGTCTCC
TCGTCGACATTGTCCACCTCCTCCTCCTCCTCCTCCCTCGCCACCAGCGCGCTAGAGCTCCCCAAGAGCCCCAAGCCCAA
GCACCCCAAGAAGCGCAAGAGAGCCGGCTCCGACCGAGAGCAGGACGCCGCCGCGAACACCAATGGTGTCCGTGGAGACG
AGAGCAGCTGCTGCAGCACCGACGAAGACTTCGCCGCCGCGAGCGTCAAGGCGGCCGTGCCCAAGAGCGGCTTCAAGCAC
CCGTCGTACCGCGGGGTGCGGCGCCGGAGCTGGGGCAAGTGGGTGTCCGAGATCCGCGAGCCGCGCAAGAAGTCGCGCAT
CTGGCTCGGCACCTTCCCGACCGCCGAGATGGCGGCGCGCGCCCACGACGTGGCCGCGCTCGCCATCAAGGGCCGCTCCG
CGCACCTCAACTTCCCGGAGCTCGCGCACGAGCTGCCCCGCCCGGACTCCACGTCGCCCGCGGACATCCAGGCCGCCGCC
GCGAAGGCCGCCGCCACCGCCGCCGTGCAGTGCGAGGCCGAGCCCGAGCACGAGCACGAGCCGGAGACGCCGTCGTCCTC
CTCCGGCGCCGTCTCGGAGACACCGGAGGCCGCAGCCTGCGCCGAAGCGGCGCCCGCGGACAGCGGCGAGGTCGACAATG
CGCTGTTCGACCTGCCCGACCTCCTTCTGGACCTGAGGGACGGGCTCTTCTGGTCGCCGGTCTGGCCGGCGGCGCTGGCC
GCCGAGGAGTACGACGGCGGCTGCTGCGTCGGGCTCAGCGAGCCTCTCCTGTGGGCCGAGTAGGAATATATTCTT-----
TTTACCGTTCTGGGCTCATGAATTGCTTTGCTAGTGTACTAGTATAGC--------------------------------
-----AAAAGATTTAGTGGTAGCAGTAGCACTGCTATTGGAAAAAAGTTATCGTCAGCTGTTTGTGAGTCTTCTTCACTC
GACCATGAAACATGTGTGCCTTTTTTTTATTGCTATCAACCAAAGAAGCTTTGCCAGACACGATGGACTTCCCCGGAAAA
GAAGACGCAGGTTTACTCCACAAGTTTGCAATTGCTTTAGATGATTGCTCAGTTGATGGACACCCCTGCATCTAGCTACA
CGGTGGGCCGCCGTTTACTGGTAGCTGTTAGAAGTTAATGAGTTGGACGCATTTGCAATTATTTTG-TTATTTTGATGGT
GATATTCATATGCTGTT-GCCCGGTGAGTCGCCGGCCGGTTGCAAGTCGTTTTATGGCCGGTGAAACAGTATCATATACT
CCAAGCAAGAAAATCAGACCGGAGCGAACTGTGGACTGTTTCCTTACTGATTTCACAAACGAGTTTGGCAGTGAGGAATG
TACTCTTGTGTTAGTAGCGTGTTGTACTGCCTCACTCTAACAGCAGAGGTGCACTTTTAACGAACAAGCTCCCTAATTTC
CACAGAGCTCTGACTTTAA------------------------------------TTACTCTTGCTGCTCTTACGTCGCC
GTTATGGGAGGATCTCTGGAAATACGGAGGGGTAAATCTTTCTTTTATACTAGTACTACTAACAAGGCCAAGATGGTAGT
GGTAATTACCTGCGGCTTATTTAAGTAGTCCGTAGGTGAAGTACTGAGCTGTAG----TCATATCTTTGCCGGGTTTGGT
GCAATACCCACGTTATCCTAGGTTACAATAAAGGGCGCCCAGTCCAGAGGCGGAAAGACACGAAAGCTAGCTCGGAGAAA
AAACAAGATAGATGGAAGGATCAAAGAAAGTTCCAACCCTGAGCGCACATCATTCCCTTGTCTCCTAGCAGCGGAGGTTA
GGTTAGTTAAAAATTAAAAACGCAAGGCCAATGACTACCAGGTTAGGAGTTAGGTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------
--S------S---SSS--S--S-SSSSSSS-----------------S-SS-----------S--S--------------
-------SS-SSSSSSSSSSSS--------------S-----------------S--------S----------------
-------------------------S-----S-----S---------S-------------------------S------
--------------S---S--------------------------------------------------S----------
---------------------------------------------------SS---------------------------
-------S-------------S----------------------------------------------------------
--------------------------------------------------------------------SSSSS-------
-------------S------------------------------------------------------------------
-----------------------------------------S--S---S---SSS-------------------------
-------------------------------------------S-------------------------S----------
------------S--------------------------------S----------------------------------
------------------S---S--------------------S------------------------------------
-----------------------------------------------S--------------------------------
------------S---------------------------S---------------------S------S----------
-----------------------------S--------------------------------------------------
-----------------------------------S--------------------S-----------------------
---------------------------------------S----------------------------------------
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--------------------------------------------S-----------------S-----------------
------------S---------------------------S---------------------------------------
----------------------------------------S----------------------------S----------
-----------------S-----------S--------S------------------------------------S-S-S
--------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS---------------------------------------------------------------------------
---------------------------------------------------------S--S-------------------
------S------------------------S------------------------------------------------
-----------------S---S---------S-------S-S--------------------S---SS-SSS------S-
------------S--S-S--------S-S----------S-SS-------------------------------------
--------S--S-SS---S-SS-S---------------------S--------------------------S-------
-------------------------------S------S--------S--------------------------------
--S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------S
--------------------------------S-----------------------------------------------
---------S-----------S----------------------------------------------------------
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-------SS----------S-----------------S----------------------------------------S-
-----------------------S--------------S-----------------
>forward_96
----------------------------------------------------------------------------TAGT
CTCCCGTCGATGGTGT----------------------------------------------------------------
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>reverse_1168
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-----------------------------------------------TGTGCTAGAGCTCCCCAAGA-------------
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>forward_97
-----------------------------------------------------------------------------AGT
CTCCCGTCGATGGTGTA---------------------------------------------------------------
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>reverse_2138
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---------------------------------------------------------GCAGGATGGACTTCCCTGG----
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